Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17005

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,668,747	+		DZA65_RS16995	0.86	+0.7
3,668,747	+		DZA65_RS16995	0.86	+1.2
3,668,747	+		DZA65_RS16995	0.86	+0.9
3,668,747	+		DZA65_RS16995	0.86	-1.1
3,668,748	-		DZA65_RS16995	0.86	+0.2
3,668,748	-		DZA65_RS16995	0.86	-1.1
3,668,793	+				-1.1
3,668,793	+				+3.0
3,668,794	-				-0.4
3,668,822	+				-0.9
3,668,823	-				-0.1
3,668,823	-				+0.9
3,668,824	+				-1.4
3,668,856	+				-0.3
3,668,857	-				+0.8
3,668,857	-				-0.1
3,668,932	-		DZA65_RS17000	0.12	+0.5
3,668,934	+		DZA65_RS17000	0.12	-0.1
3,668,934	+		DZA65_RS17000	0.12	-1.5
3,668,934	+		DZA65_RS17000	0.12	-0.1
3,668,935	-		DZA65_RS17000	0.12	-0.6
3,668,936	+		DZA65_RS17000	0.13	-1.6
3,668,937	-		DZA65_RS17000	0.13	-0.1
3,668,937	-		DZA65_RS17000	0.13	+0.9
3,668,937	-		DZA65_RS17000	0.13	-0.6
3,668,949	+		DZA65_RS17000	0.14	-0.4
3,668,950	-		DZA65_RS17000	0.14	-0.1
3,669,022	+		DZA65_RS17000	0.22	+0.7
3,669,028	+		DZA65_RS17000	0.23	-0.8
3,669,067	+		DZA65_RS17000	0.27	-0.6
3,669,071	-		DZA65_RS17000	0.27	-1.1
3,669,071	-		DZA65_RS17000	0.27	-1.6
3,669,163	+		DZA65_RS17000	0.37	+2.2
3,669,163	+		DZA65_RS17000	0.37	-0.1
3,669,164	-		DZA65_RS17000	0.37	+0.5
3,669,167	-		DZA65_RS17000	0.38	+0.9
3,669,208	-		DZA65_RS17000	0.42	+2.0
3,669,212	-		DZA65_RS17000	0.43	-1.9
3,669,214	+		DZA65_RS17000	0.43	+1.4
3,669,215	-		DZA65_RS17000	0.43	+1.6
3,669,223	+		DZA65_RS17000	0.44	+1.9
3,669,226	+		DZA65_RS17000	0.44	-0.2
3,669,331	+		DZA65_RS17000	0.56	-1.1
3,669,332	-		DZA65_RS17000	0.56	+0.9
3,669,341	-		DZA65_RS17000	0.57	-0.5
3,669,342	+		DZA65_RS17000	0.57	-2.8
3,669,343	-		DZA65_RS17000	0.57	-2.8
3,669,343	-		DZA65_RS17000	0.57	+0.6
3,669,358	-		DZA65_RS17000	0.58	+0.9
3,669,358	-		DZA65_RS17000	0.58	-0.6
3,669,367	-		DZA65_RS17000	0.59	-1.6
3,669,390	-		DZA65_RS17000	0.62	-1.1
3,669,390	-		DZA65_RS17000	0.62	+0.5
3,669,417	+		DZA65_RS17000	0.65	-2.2
3,669,418	-		DZA65_RS17000	0.65	-2.6
3,669,419	+		DZA65_RS17000	0.65	+0.9
3,669,419	+		DZA65_RS17000	0.65	+2.3
3,669,419	+		DZA65_RS17000	0.65	+0.9
3,669,419	+		DZA65_RS17000	0.65	+1.4
3,669,419	+		DZA65_RS17000	0.65	+0.3
3,669,419	+		DZA65_RS17000	0.65	-2.1
3,669,419	+		DZA65_RS17000	0.65	-1.6
3,669,419	+		DZA65_RS17000	0.65	+1.9
3,669,419	+		DZA65_RS17000	0.65	+0.9
3,669,420	-		DZA65_RS17000	0.65	+0.2
3,669,420	-		DZA65_RS17000	0.65	+2.9
3,669,420	-		DZA65_RS17000	0.65	+0.5
3,669,420	-		DZA65_RS17000	0.65	-1.1
3,669,420	-		DZA65_RS17000	0.65	+0.2
3,669,433	+		DZA65_RS17000	0.67	-0.9
3,669,478	+		DZA65_RS17000	0.72	-1.9
3,669,553	-		DZA65_RS17000	0.80	+0.8
3,669,568	+		DZA65_RS17000	0.81	-0.6
3,669,569	-		DZA65_RS17000	0.81	-2.0
3,669,670	-				-1.3
3,669,677	-				+0.9
3,669,738	+				-2.5
3,669,739	-				-1.1
3,669,813	+				-1.4
3,669,841	+		DZA65_RS17005	0.13	-0.5
3,669,906	-		DZA65_RS17005	0.22	+0.8
3,669,944	+		DZA65_RS17005	0.27	-0.9
3,670,020	+		DZA65_RS17005	0.37	-2.2
3,670,109	-		DZA65_RS17005	0.49	-0.6
3,670,118	-		DZA65_RS17005	0.51	-2.2
3,670,119	+		DZA65_RS17005	0.51	-0.9
3,670,171	+		DZA65_RS17005	0.58	-0.1
3,670,215	-		DZA65_RS17005	0.64	-0.8
3,670,217	+		DZA65_RS17005	0.64	-1.0
3,670,218	-		DZA65_RS17005	0.64	+0.2
3,670,305	-		DZA65_RS17005	0.76	+0.4
3,670,305	-		DZA65_RS17005	0.76	-0.6
3,670,433	-				-0.6
3,670,442	+				-0.4
3,670,461	+				-2.2
3,670,480	+				+1.0
3,670,544	+				-0.2
3,670,546	+				+0.7
3,670,546	+				-1.1
3,670,547	-				-0.3
3,670,547	-				+0.1
3,670,547	-				+0.3
3,670,547	-				-1.9
3,670,547	-				+2.5
3,670,547	-				+0.9
3,670,547	-				-2.1
3,670,548	+				+0.4
3,670,549	-				+0.6
3,670,553	+				+0.5
3,670,554	-				+0.2
3,670,554	-				-1.4
3,670,554	-				-0.1
3,670,561	-				+1.6
3,670,612	+				+0.9
3,670,612	+				+0.5
3,670,644	+		DZA65_RS17010	0.11	+0.9
3,670,644	+		DZA65_RS17010	0.11	-2.1
3,670,644	+		DZA65_RS17010	0.11	+1.9
3,670,644	+		DZA65_RS17010	0.11	+2.9
3,670,645	-		DZA65_RS17010	0.11	+0.8
3,670,645	-		DZA65_RS17010	0.11	+1.3
3,670,649	+		DZA65_RS17010	0.12	+1.8
3,670,649	+		DZA65_RS17010	0.12	-2.5
3,670,650	-		DZA65_RS17010	0.12	+0.9
3,670,650	-		DZA65_RS17010	0.12	-1.4
3,670,650	-		DZA65_RS17010	0.12	-0.5
3,670,662	+		DZA65_RS17010	0.13	+0.4
3,670,727	+		DZA65_RS17010	0.17	-0.4
3,670,727	+		DZA65_RS17010	0.17	-0.4
3,670,728	-		DZA65_RS17010	0.17	-1.6
3,670,741	-		DZA65_RS17010	0.18	+0.5
3,670,778	+		DZA65_RS17010	0.21	+2.4
3,670,814	-		DZA65_RS17010	0.23	+1.3
3,670,835	+		DZA65_RS17010	0.25	-1.1
3,670,835	+		DZA65_RS17010	0.25	-1.1
3,670,836	-		DZA65_RS17010	0.25	-1.1
3,670,836	-		DZA65_RS17010	0.25	-1.1
3,670,836	-		DZA65_RS17010	0.25	-1.8
3,670,886	+		DZA65_RS17010	0.28	+1.5
3,670,905	-		DZA65_RS17010	0.29	-0.9
3,671,048	+		DZA65_RS17010	0.39	+0.5
3,671,048	+		DZA65_RS17010	0.39	+2.5
3,671,048	+		DZA65_RS17010	0.39	+4.3
3,671,048	+		DZA65_RS17010	0.39	-1.9
3,671,049	-		DZA65_RS17010	0.40	-1.1
3,671,049	-		DZA65_RS17010	0.40	-0.2
3,671,049	-		DZA65_RS17010	0.40	+1.3
3,671,049	-		DZA65_RS17010	0.40	+1.5
3,671,049	-		DZA65_RS17010	0.40	-1.4
3,671,052	+		DZA65_RS17010	0.40	-0.5
3,671,053	-		DZA65_RS17010	0.40	-1.1
3,671,053	-		DZA65_RS17010	0.40	-0.4
3,671,053	-		DZA65_RS17010	0.40	+3.3
3,671,053	-		DZA65_RS17010	0.40	-1.9
3,671,053	-		DZA65_RS17010	0.40	-0.1
3,671,054	+		DZA65_RS17010	0.40	-0.6
3,671,096	+		DZA65_RS17010	0.43	-0.9
3,671,097	-		DZA65_RS17010	0.43	-0.8
3,671,097	-		DZA65_RS17010	0.43	-1.4
3,671,097	-		DZA65_RS17010	0.43	+0.4
3,671,119	-		DZA65_RS17010	0.44	+4.2
3,671,132	+		DZA65_RS17010	0.45	-0.6
3,671,171	-		DZA65_RS17010	0.48	-1.8
3,671,186	+		DZA65_RS17010	0.49	-0.6
3,671,186	+		DZA65_RS17010	0.49	+1.1
3,671,229	+				-0.8
3,671,229	+		DZA65_RS17010	0.52	+0.2
3,671,229	+		DZA65_RS17010	0.52	-0.6
3,671,229	+		DZA65_RS17010	0.52	-0.2
3,671,229	+		DZA65_RS17010	0.52	-0.6
3,671,229	+		DZA65_RS17010	0.52	+0.1
3,671,230	-		DZA65_RS17010	0.52	-1.5
3,671,247	-		DZA65_RS17010	0.53	-0.6
3,671,247	-		DZA65_RS17010	0.53	-0.7
3,671,319	-		DZA65_RS17010	0.58	-1.3
3,671,319	-		DZA65_RS17010	0.58	+0.2
3,671,324	+		DZA65_RS17010	0.59	-0.1
3,671,371	-		DZA65_RS17010	0.62	-0.1
3,671,463	+		DZA65_RS17010	0.68	+1.4