Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16855

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,640,548	+		DZA65_RS16850	0.34	-2.1
3,640,548	+		DZA65_RS16850	0.34	-0.6
3,640,548	+		DZA65_RS16850	0.34	-0.6
3,640,548	+		DZA65_RS16850	0.34	-0.1
3,640,549	-		DZA65_RS16850	0.34	-1.1
3,640,549	-		DZA65_RS16850	0.34	+2.4
3,640,549	-		DZA65_RS16850	0.34	+1.9
3,640,549	-		DZA65_RS16850	0.34	-3.1
3,640,549	-		DZA65_RS16850	0.34	+0.6
3,640,591	+		DZA65_RS16850	0.46	+2.7
3,640,729	+		DZA65_RS16850	0.87	+2.8
3,640,729	+		DZA65_RS16850	0.87	+0.4
3,640,752	+				-0.6
3,640,752	+				+1.1
3,640,752	+				+0.7
3,640,753	-				+0.6
3,640,753	-				+0.9
3,640,753	-				+0.7
3,640,753	-				+2.4
3,640,764	+				-1.9
3,640,764	+				+0.9
3,640,765	-				+1.1
3,640,767	-				+0.9
3,640,773	+				-1.6
3,640,773	+				+0.9
3,640,773	+				+3.9
3,640,773	+				+1.5
3,640,773	+				-1.9
3,640,773	+				+0.4
3,640,773	+				+3.7
3,640,774	-				-0.6
3,640,774	-				+0.9
3,640,774	-				+0.2
3,640,774	-				-1.9
3,640,774	-				+0.6
3,640,827	-				-1.9
3,640,835	+				+0.9
3,640,836	-				-0.3
3,640,836	-				-3.1
3,640,836	-				-0.1
3,640,837	+				+1.3
3,640,837	+				-1.1
3,640,837	+				+0.7
3,640,838	-				-1.1
3,640,838	-				+0.9
3,640,838	-				+0.4
3,640,848	+				-0.2
3,640,848	+				+1.9
3,640,848	+				+2.8
3,640,848	+				+1.6
3,640,848	+				-1.4
3,640,849	-				-2.4
3,640,849	-				+0.5
3,640,849	-				-1.1
3,640,849	-				-0.2
3,640,849	-				-2.1
3,640,853	+				-1.2
3,640,891	+				-1.6
3,640,891	+				+1.6
3,640,891	+				+2.9
3,640,891	+				-1.1
3,640,892	-				-1.9
3,640,892	-				-0.1
3,640,905	+				+5.3
3,640,906	-				-0.1
3,640,988	+				+1.4
3,641,039	+				-1.9
3,641,039	+				+0.2
3,641,039	+				-0.2
3,641,039	+				+5.4
3,641,039	+				+4.2
3,641,039	+				+1.0
3,641,039	+				+2.5
3,641,039	+				+1.7
3,641,039	+				+1.4
3,641,039	+				-0.4
3,641,039	+				+3.0
3,641,039	+				-2.5
3,641,039	+				-0.6
3,641,040	-				+0.3
3,641,040	-				-0.8
3,641,040	-				-0.5
3,641,040	-				-0.1
3,641,040	-				+1.8
3,641,040	-				-2.4
3,641,040	-				+2.1
3,641,040	-				+1.5
3,641,040	-				+2.3
3,641,040	-				-2.4
3,641,040	-				-1.6
3,641,040	-				-1.4
3,641,042	+				-3.0
3,641,042	+				-0.1
3,641,043	-				+0.7
3,641,043	-				-2.1
3,641,043	-				+0.1
3,641,043	-				+0.5
3,641,046	+				+3.1
3,641,046	+				-2.2
3,641,046	+				-0.3
3,641,047	-				-0.1
3,641,047	-				-0.6
3,641,047	-				+0.8
3,641,047	-				+0.4
3,641,047	-				-1.4
3,641,139	-				-0.6
3,641,195	+				-3.0
3,641,195	+				-0.9
3,641,196	-				-1.1
3,641,210	-				+1.5
3,641,225	+				-1.6
3,641,225	+				+3.4
3,641,225	+				+0.3
3,641,226	-				+0.9
3,641,226	-				-2.5
3,641,226	-				+2.5
3,641,226	-				+0.0
3,641,228	+				-2.6
3,641,228	+				+0.8
3,641,228	+				+1.1
3,641,228	+				+2.8
3,641,228	+				-0.6
3,641,228	+				+1.9
3,641,229	-				+1.2
3,641,229	-				+0.6
3,641,229	-				-1.1
3,641,229	-				-1.6
3,641,251	-				+1.3
3,641,297	+				+2.8
3,641,298	-				-0.3
3,641,298	-				-1.1
3,641,371	+				+1.9
3,641,416	+				+0.6
3,641,417	-				-0.8
3,641,417	-				-0.1
3,641,500	+				-0.3
3,641,500	+				+2.2
3,641,500	+				-0.6
3,641,500	+				+0.1
3,641,500	+				-2.4
3,641,500	+				-1.6
3,641,500	+				-1.4
3,641,500	+				-1.6
3,641,500	+				+0.1
3,641,501	-				-2.2
3,641,501	-				-0.1
3,641,501	-				+1.9
3,641,501	-				+1.4
3,641,501	-				+3.6
3,641,501	-				+0.3
3,641,535	-				-2.6
3,641,535	-				+1.7
3,641,787	+		DZA65_RS16855	0.13	-0.6
3,641,893	+		DZA65_RS16855	0.18	-3.2
3,641,893	+		DZA65_RS16855	0.18	-2.0
3,641,894	-		DZA65_RS16855	0.18	-1.4
3,641,894	-		DZA65_RS16855	0.18	-0.1
3,641,894	-		DZA65_RS16855	0.18	+1.5
3,641,909	+		DZA65_RS16855	0.19	-1.6
3,641,910	-		DZA65_RS16855	0.19	+0.4
3,642,058	+				-0.6
3,642,061	+		DZA65_RS16855	0.26	-1.6
3,642,061	+		DZA65_RS16855	0.26	-2.1
3,642,061	+		DZA65_RS16855	0.26	-0.1
3,642,061	+		DZA65_RS16855	0.26	-1.4
3,642,061	+		DZA65_RS16855	0.26	-0.6
3,642,061	+		DZA65_RS16855	0.26	-1.4
3,642,061	+		DZA65_RS16855	0.26	-0.4
3,642,061	+		DZA65_RS16855	0.26	+0.4
3,642,061	+		DZA65_RS16855	0.26	+0.8
3,642,062	-		DZA65_RS16855	0.26	-1.2
3,642,062	-		DZA65_RS16855	0.26	-1.5
3,642,062	-		DZA65_RS16855	0.26	-1.0
3,642,101	+		DZA65_RS16855	0.28	+0.9
3,642,102	-		DZA65_RS16855	0.28	-0.6
3,642,163	+		DZA65_RS16855	0.31	-2.4
3,642,241	+		DZA65_RS16855	0.34	+1.9
3,642,241	+		DZA65_RS16855	0.34	-0.6
3,642,241	+		DZA65_RS16855	0.34	-0.0
3,642,346	-		DZA65_RS16855	0.39	+0.2
3,642,346	-		DZA65_RS16855	0.39	-0.0
3,642,357	+		DZA65_RS16855	0.39	-3.2
3,642,357	+		DZA65_RS16855	0.39	+1.7
3,642,357	+		DZA65_RS16855	0.39	+0.5
3,642,357	+		DZA65_RS16855	0.39	-0.7
3,642,358	-		DZA65_RS16855	0.39	+1.9
3,642,476	-		DZA65_RS16855	0.45	-0.6
3,642,476	-		DZA65_RS16855	0.45	+1.2
3,642,598	+		DZA65_RS16855	0.50	-1.5
3,642,599	-		DZA65_RS16855	0.50	+0.6
3,642,602	-		DZA65_RS16855	0.51	-0.1
3,642,602	-		DZA65_RS16855	0.51	-0.5
3,642,733	-		DZA65_RS16855	0.57	-3.1
3,642,753	+		DZA65_RS16855	0.58	-1.6
3,642,753	+		DZA65_RS16855	0.58	-0.1
3,642,753	+		DZA65_RS16855	0.58	-0.4
3,642,753	+		DZA65_RS16855	0.58	-0.6
3,642,754	-		DZA65_RS16855	0.58	-0.6
3,642,754	-		DZA65_RS16855	0.58	+0.5
3,642,754	-		DZA65_RS16855	0.58	-0.9
3,642,754	-		DZA65_RS16855	0.58	-2.8
3,642,755	+		DZA65_RS16855	0.58	+0.8
3,642,755	+		DZA65_RS16855	0.58	-2.6
3,642,755	+		DZA65_RS16855	0.58	+0.4
3,642,755	+				-1.9
3,642,756	-		DZA65_RS16855	0.58	-0.4
3,642,756	-		DZA65_RS16855	0.58	+0.2
3,642,756	-		DZA65_RS16855	0.58	-0.2
3,642,756	-		DZA65_RS16855	0.58	+2.6
3,642,756	-		DZA65_RS16855	0.58	+0.9
3,642,756	-		DZA65_RS16855	0.58	+0.5
3,642,756	-		DZA65_RS16855	0.58	-0.6
3,642,756	-		DZA65_RS16855	0.58	-2.2
3,642,756	-		DZA65_RS16855	0.58	-1.1
3,642,777	+		DZA65_RS16855	0.59	-0.8
3,642,778	-		DZA65_RS16855	0.59	+1.9
3,642,778	-		DZA65_RS16855	0.59	-1.0
3,642,778	-		DZA65_RS16855	0.59	+1.2
3,642,913	-		DZA65_RS16855	0.65	-0.4
3,642,913	-		DZA65_RS16855	0.65	-0.4
3,642,938	+		DZA65_RS16855	0.66	-0.6
3,642,939	-		DZA65_RS16855	0.66	-0.6
3,642,970	+		DZA65_RS16855	0.67	+1.2
3,643,069	+		DZA65_RS16855	0.72	+0.6
3,643,124	+		DZA65_RS16855	0.74	+1.4
3,643,124	+		DZA65_RS16855	0.74	-0.4
3,643,125	-		DZA65_RS16855	0.75	-1.4
3,643,208	+		DZA65_RS16855	0.78	+1.4
3,643,209	-		DZA65_RS16855	0.78	+1.7
3,643,209	-		DZA65_RS16855	0.78	-1.6
3,643,209	-		DZA65_RS16855	0.78	+0.9
3,643,209	-		DZA65_RS16855	0.78	-3.3
3,643,212	+		DZA65_RS16855	0.79	-2.1
3,643,212	+		DZA65_RS16855	0.79	-2.5
3,643,212	+		DZA65_RS16855	0.79	-2.1
3,643,213	-		DZA65_RS16855	0.79	-0.4
3,643,213	-		DZA65_RS16855	0.79	-1.4
3,643,213	-		DZA65_RS16855	0.79	+0.3
3,643,222	+		DZA65_RS16855	0.79	+1.2
3,643,230	+		DZA65_RS16855	0.79	-1.4
3,643,230	+		DZA65_RS16855	0.79	+0.7
3,643,230	+		DZA65_RS16855	0.79	-1.9
3,643,231	-		DZA65_RS16855	0.79	-1.1
3,643,231	-		DZA65_RS16855	0.79	-0.5
3,643,240	+		DZA65_RS16855	0.80	-0.7
3,643,241	-		DZA65_RS16855	0.80	-1.2
3,643,241	-		DZA65_RS16855	0.80	-1.1
3,643,241	-		DZA65_RS16855	0.80	-1.1
3,643,274	+		DZA65_RS16855	0.81	-1.2
3,643,274	+		DZA65_RS16855	0.81	-2.1
3,643,274	+		DZA65_RS16855	0.81	+0.4
3,643,275	-		DZA65_RS16855	0.81	-2.1
3,643,278	+		DZA65_RS16855	0.82	+0.9
3,643,278	+		DZA65_RS16855	0.82	-1.6
3,643,278	+		DZA65_RS16855	0.82	-0.2
3,643,278	+		DZA65_RS16855	0.82	-1.1
3,643,278	+		DZA65_RS16855	0.82	-0.1
3,643,278	+		DZA65_RS16855	0.82	+2.7
3,643,278	+		DZA65_RS16855	0.82	+0.4
3,643,279	-		DZA65_RS16855	0.82	+0.9
3,643,279	-		DZA65_RS16855	0.82	+0.7
3,643,279	-		DZA65_RS16855	0.82	-0.9
3,643,353	-		DZA65_RS16855	0.85	+1.5
3,643,354	+		DZA65_RS16855	0.85	-1.4
3,643,354	+		DZA65_RS16855	0.85	+2.9
3,643,354	+		DZA65_RS16855	0.85	-0.1
3,643,355	-		DZA65_RS16855	0.85	-0.6
3,643,355	-		DZA65_RS16855	0.85	-0.3
3,643,355	-		DZA65_RS16855	0.85	+1.5
3,643,355	-		DZA65_RS16855	0.85	-1.1
3,643,378	+				-1.9
3,643,378	+		DZA65_RS16855	0.86	-0.6
3,643,378	+		DZA65_RS16855	0.86	-1.6
3,643,379	-		DZA65_RS16855	0.86	+1.5
3,643,379	-		DZA65_RS16855	0.86	-1.6
3,643,379	-		DZA65_RS16855	0.86	+1.4
3,643,414	+		DZA65_RS16855	0.88	-2.1
3,643,431	+		DZA65_RS16855	0.89	-3.1
3,643,431	+		DZA65_RS16855	0.89	-2.1
3,643,432	-		DZA65_RS16855	0.89	-0.3
3,643,501	+				-2.5
3,643,520	+				+0.7
3,643,520	+				-0.3
3,643,520	+				+1.4
3,643,520	+				+0.5
3,643,520	+				-1.9
3,643,521	-				+2.4
3,643,521	-				-1.1
3,643,521	-				-0.3
3,643,521	-				+1.2
3,643,521	-				+2.3
3,643,521	-				-1.6
3,643,521	-				-1.0
3,643,651	-				-1.2
3,643,680	-				-1.6
3,643,692	+				-1.1
3,643,692	+				+1.5
3,643,692	+				-0.6
3,643,704	+				+0.5
3,643,704	+				-2.8
3,643,705	-				-0.6
3,643,705	-				-2.5
3,643,705	-				+0.9
3,643,705	-				+0.1
3,643,705	-				-1.4
3,643,773	-		DZA65_RS16860	0.12	+0.9
3,643,945	+		DZA65_RS16860	0.33	-2.1
3,643,945	+		DZA65_RS16860	0.33	+0.2
3,643,945	+		DZA65_RS16860	0.33	+0.9
3,643,945	+		DZA65_RS16860	0.33	-0.6
3,643,945	+		DZA65_RS16860	0.33	-1.1
3,643,945	+		DZA65_RS16860	0.33	-1.1
3,643,945	+		DZA65_RS16860	0.33	+0.3
3,643,945	+		DZA65_RS16860	0.33	-0.3
3,643,945	+		DZA65_RS16860	0.33	+0.7
3,643,945	+		DZA65_RS16860	0.33	-2.4
3,643,945	+		DZA65_RS16860	0.33	-0.6
3,643,945	+		DZA65_RS16860	0.33	+1.4
3,643,945	+		DZA65_RS16860	0.33	+2.1
3,643,945	+		DZA65_RS16860	0.33	+0.9
3,643,945	+		DZA65_RS16860	0.33	-0.1
3,643,945	+		DZA65_RS16860	0.33	+0.4
3,643,945	+		DZA65_RS16860	0.33	-1.9
3,643,945	+		DZA65_RS16860	0.33	+1.2
3,643,945	+		DZA65_RS16860	0.33	-1.1
3,643,945	+		DZA65_RS16860	0.33	-1.6
3,643,945	+		DZA65_RS16860	0.33	-0.3
3,643,945	+		DZA65_RS16860	0.33	-1.9
3,643,946	-		DZA65_RS16860	0.33	-1.2
3,643,946	-		DZA65_RS16860	0.33	-2.2
3,643,946	-		DZA65_RS16860	0.33	-0.1
3,643,946	-		DZA65_RS16860	0.33	-1.9
3,643,946	-		DZA65_RS16860	0.33	-2.9
3,643,946	-		DZA65_RS16860	0.33	+0.9
3,643,946	-		DZA65_RS16860	0.33	+0.9
3,643,946	-		DZA65_RS16860	0.33	+0.9
3,643,946	-		DZA65_RS16860	0.33	+0.9
3,643,946	-		DZA65_RS16860	0.33	-2.4
3,643,946	-		DZA65_RS16860	0.33	-0.1
3,643,946	-		DZA65_RS16860	0.33	-1.1
3,643,946	-		DZA65_RS16860	0.33	-1.1
3,643,946	-		DZA65_RS16860	0.33	-3.1
3,643,946	-		DZA65_RS16860	0.33	-0.8
3,643,946	-		DZA65_RS16860	0.33	+0.7
3,643,946	-		DZA65_RS16860	0.33	-2.1
3,643,946	-		DZA65_RS16860	0.33	-0.3
3,643,946	-		DZA65_RS16860	0.33	+1.6
3,643,946	-		DZA65_RS16860	0.33	+2.7
3,643,946	-		DZA65_RS16860	0.33	+2.9
3,643,946	-		DZA65_RS16860	0.33	+0.9
3,643,947	+		DZA65_RS16860	0.33	+1.7
3,643,947	+		DZA65_RS16860	0.33	-0.3
3,643,947	+		DZA65_RS16860	0.33	+0.5
3,643,947	+		DZA65_RS16860	0.33	+1.1
3,643,947	+		DZA65_RS16860	0.33	+0.4
3,643,947	+		DZA65_RS16860	0.33	-0.2
3,643,947	+		DZA65_RS16860	0.33	-2.9
3,643,947	+		DZA65_RS16860	0.33	-2.8
3,643,947	+		DZA65_RS16860	0.33	-0.1
3,643,947	+		DZA65_RS16860	0.33	-0.9
3,643,947	+		DZA65_RS16860	0.33	-1.4
3,643,947	+		DZA65_RS16860	0.33	-2.1
3,643,947	+		DZA65_RS16860	0.33	-0.3
3,643,947	+		DZA65_RS16860	0.33	-1.4
3,643,947	+		DZA65_RS16860	0.33	+1.6
3,643,947	+		DZA65_RS16860	0.33	-2.1
3,643,947	+		DZA65_RS16860	0.33	-1.4
3,643,947	+		DZA65_RS16860	0.33	+2.3
3,643,947	+		DZA65_RS16860	0.33	+3.0
3,643,947	+		DZA65_RS16860	0.33	+0.0
3,643,947	+		DZA65_RS16860	0.33	+1.1
3,643,947	+		DZA65_RS16860	0.33	+0.6
3,643,947	+		DZA65_RS16860	0.33	-0.1
3,643,947	+		DZA65_RS16860	0.33	+0.3
3,643,947	+		DZA65_RS16860	0.33	-0.2
3,643,947	+		DZA65_RS16860	0.33	-0.1
3,643,947	+		DZA65_RS16860	0.33	+0.9
3,643,948	-		DZA65_RS16860	0.33	+0.9
3,643,948	-		DZA65_RS16860	0.33	-1.6
3,643,948	-		DZA65_RS16860	0.33	+3.4
3,643,948	-		DZA65_RS16860	0.33	+1.4
3,643,948	-		DZA65_RS16860	0.33	-1.3
3,643,948	-		DZA65_RS16860	0.33	-1.6
3,643,948	-		DZA65_RS16860	0.33	-2.4
3,643,948	-		DZA65_RS16860	0.33	+0.5
3,643,948	-		DZA65_RS16860	0.33	-1.1
3,643,948	-		DZA65_RS16860	0.33	-1.4
3,643,948	-		DZA65_RS16860	0.33	+0.8
3,643,948	-		DZA65_RS16860	0.33	-0.3
3,643,948	-		DZA65_RS16860	0.33	+1.1
3,643,948	-		DZA65_RS16860	0.33	-1.5
3,643,948	-		DZA65_RS16860	0.33	+1.5
3,643,948	-		DZA65_RS16860	0.33	-1.9
3,643,948	-		DZA65_RS16860	0.33	-1.2
3,643,948	-		DZA65_RS16860	0.33	+0.8
3,643,949	+		DZA65_RS16860	0.33	-1.6
3,643,949	+		DZA65_RS16860	0.33	+0.9
3,643,950	-		DZA65_RS16860	0.33	-2.4
3,643,950	-		DZA65_RS16860	0.33	+0.2
3,643,950	-		DZA65_RS16860	0.33	-0.8
3,643,973	+		DZA65_RS16860	0.36	-0.2
3,643,973	+		DZA65_RS16860	0.36	-3.1
3,644,054	+		DZA65_RS16860	0.45	+0.8
3,644,054	+		DZA65_RS16860	0.45	+0.5
3,644,055	-		DZA65_RS16860	0.46	-1.8
3,644,097	+		DZA65_RS16860	0.51	-0.5
3,644,097	+		DZA65_RS16860	0.51	+0.9
3,644,097	+		DZA65_RS16860	0.51	-2.1
3,644,097	+		DZA65_RS16860	0.51	+2.9
3,644,098	-		DZA65_RS16860	0.51	-1.4
3,644,098	-		DZA65_RS16860	0.51	+0.6
3,644,098	-		DZA65_RS16860	0.51	-1.8
3,644,257	-		DZA65_RS16860	0.69	-0.1
3,644,281	+		DZA65_RS16860	0.72	-2.2
3,644,289	+		DZA65_RS16860	0.73	-1.9
3,644,290	-		DZA65_RS16860	0.73	-1.9
3,644,290	-		DZA65_RS16860	0.73	-3.2
3,644,291	+		DZA65_RS16860	0.73	+1.6
3,644,292	-		DZA65_RS16860	0.73	-0.4
3,644,292	-		DZA65_RS16860	0.73	+2.1
3,644,343	+		DZA65_RS16860	0.80	-1.4
3,644,343	+		DZA65_RS16860	0.80	-0.2
3,644,344	-		DZA65_RS16860	0.80	-0.9
3,644,344	-		DZA65_RS16860	0.80	+0.5
3,644,344	-		DZA65_RS16860	0.80	-0.1
3,644,373	+		DZA65_RS16860	0.83	+1.2
3,644,374	-		DZA65_RS16860	0.83	-1.4
3,644,384	+		DZA65_RS16860	0.84	-0.6
3,644,432	+				-0.5
3,644,433	-				-0.6
3,644,463	+				+1.8
3,644,463	+				+1.4
3,644,514	+				+1.5
3,644,531	+				+0.9
3,644,555	+				-0.6
3,644,555	+				-1.4
3,644,555	+				+1.1
3,644,555	+				-1.4
3,644,555	+				-0.6
3,644,556	-				+0.5
3,644,556	-				+0.4
3,644,556	-				-1.9
3,644,556	-				-0.6
3,644,556	-				-0.5
3,644,556	-				+0.9
3,644,556	-				-2.1
3,644,556	-				+4.2
3,644,594	+				-0.7
3,644,594	+				+0.7
3,644,594	+				-0.4
3,644,595	-				-1.6
3,644,595	-				-0.2
3,644,680	-				+0.4
3,644,680	-				+0.4