Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15950

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,459,929	+				-1.1
3,460,031	+				-1.0
3,460,037	+				+0.2
3,460,038	-				+1.4
3,460,038	-				+0.5
3,460,038	-				-0.1
3,460,116	-		DZA65_RS15945	0.12	+1.1
3,460,116	-		DZA65_RS15945	0.12	+0.4
3,460,116	-		DZA65_RS15945	0.12	+1.6
3,460,155	-		DZA65_RS15945	0.17	-1.7
3,460,167	+				+0.5
3,460,167	+		DZA65_RS15945	0.18	+0.6
3,460,212	+		DZA65_RS15945	0.24	-2.4
3,460,212	+		DZA65_RS15945	0.24	-0.1
3,460,263	+		DZA65_RS15945	0.30	+0.3
3,460,263	+		DZA65_RS15945	0.30	-1.7
3,460,263	+		DZA65_RS15945	0.30	+1.5
3,460,263	+		DZA65_RS15945	0.30	-0.7
3,460,263	+		DZA65_RS15945	0.30	+2.5
3,460,263	+		DZA65_RS15945	0.30	-0.7
3,460,263	+		DZA65_RS15945	0.30	-1.4
3,460,264	-		DZA65_RS15945	0.30	+0.3
3,460,264	-		DZA65_RS15945	0.30	+4.1
3,460,264	-		DZA65_RS15945	0.30	-0.7
3,460,265	+		DZA65_RS15945	0.31	+0.3
3,460,265	+		DZA65_RS15945	0.31	-1.0
3,460,265	+		DZA65_RS15945	0.31	-1.3
3,460,266	-		DZA65_RS15945	0.31	+0.1
3,460,266	-		DZA65_RS15945	0.31	+0.9
3,460,266	-		DZA65_RS15945	0.31	-0.1
3,460,387	-		DZA65_RS15945	0.46	+1.1
3,460,387	-		DZA65_RS15945	0.46	-1.1
3,460,438	-		DZA65_RS15945	0.52	-1.1
3,460,629	+		DZA65_RS15945	0.76	+1.0
3,460,629	+		DZA65_RS15945	0.76	+0.7
3,460,629	+		DZA65_RS15945	0.76	-2.4
3,460,629	+		DZA65_RS15945	0.76	+0.6
3,460,629	+		DZA65_RS15945	0.76	-1.7
3,460,697	+		DZA65_RS15945	0.85	-1.9
3,460,697	+		DZA65_RS15945	0.85	+0.7
3,460,697	+		DZA65_RS15945	0.85	-1.1
3,460,698	-		DZA65_RS15945	0.85	-2.1
3,460,698	-		DZA65_RS15945	0.85	+0.0
3,460,698	-		DZA65_RS15945	0.85	+0.0
3,460,698	-		DZA65_RS15945	0.85	+1.1
3,460,698	-		DZA65_RS15945	0.85	-1.0
3,460,698	-		DZA65_RS15945	0.85	+2.2
3,460,698	-		DZA65_RS15945	0.85	-1.4
3,460,701	+		DZA65_RS15945	0.85	+0.3
3,460,701	+		DZA65_RS15945	0.85	-0.7
3,460,701	+		DZA65_RS15945	0.85	-2.7
3,460,701	+		DZA65_RS15945	0.85	+1.8
3,460,701	+		DZA65_RS15945	0.85	+2.5
3,460,701	+		DZA65_RS15945	0.85	+0.7
3,460,701	+		DZA65_RS15945	0.85	+0.2
3,460,701	+		DZA65_RS15945	0.85	-0.7
3,460,701	+		DZA65_RS15945	0.85	+0.9
3,460,702	-		DZA65_RS15945	0.85	-0.7
3,460,702	-		DZA65_RS15945	0.85	-1.3
3,460,702	-		DZA65_RS15945	0.85	-0.2
3,460,702	-		DZA65_RS15945	0.85	+0.9
3,460,702	-		DZA65_RS15945	0.85	-2.0
3,460,702	-		DZA65_RS15945	0.85	-3.2
3,460,702	-		DZA65_RS15945	0.85	-1.4
3,460,702	-		DZA65_RS15945	0.85	-0.1
3,460,702	-		DZA65_RS15945	0.85	-0.9
3,460,702	-				-1.1
3,460,702	-		DZA65_RS15945	0.85	-0.7
3,460,702	-		DZA65_RS15945	0.85	-1.4
3,460,777	+				-0.7
3,460,777	+				+1.4
3,460,778	-				-2.3
3,460,778	-				+3.2
3,460,778	-				-0.4
3,460,778	-				+0.5
3,460,778	-				+1.9
3,460,778	-				+1.5
3,460,809	+				+1.8
3,460,809	+				-0.8
3,460,810	-				-0.7
3,461,080	+		DZA65_RS15950	0.15	-1.7
3,461,080	+		DZA65_RS15950	0.15	+0.5
3,461,080	+		DZA65_RS15950	0.15	-2.7
3,461,080	+		DZA65_RS15950	0.15	-0.9
3,461,080	+		DZA65_RS15950	0.15	+0.6
3,461,080	+		DZA65_RS15950	0.15	+1.0
3,461,081	-		DZA65_RS15950	0.15	-0.1
3,461,081	-		DZA65_RS15950	0.15	+0.8
3,461,146	+		DZA65_RS15950	0.19	+1.3
3,461,149	+		DZA65_RS15950	0.19	-0.3
3,461,149	+		DZA65_RS15950	0.19	+1.5
3,461,149	+		DZA65_RS15950	0.19	-0.3
3,461,150	-		DZA65_RS15950	0.19	+1.2
3,461,150	-		DZA65_RS15950	0.19	-2.4
3,461,150	-		DZA65_RS15950	0.19	-1.4
3,461,155	+		DZA65_RS15950	0.19	-0.1
3,461,156	-		DZA65_RS15950	0.19	-1.3
3,461,156	-		DZA65_RS15950	0.19	-2.3
3,461,156	-		DZA65_RS15950	0.19	+0.0
3,461,411	-		DZA65_RS15950	0.35	-1.1
3,461,411	-		DZA65_RS15950	0.35	-2.8
3,461,411	-		DZA65_RS15950	0.35	-1.3
3,461,457	+		DZA65_RS15950	0.37	+1.9
3,461,486	-		DZA65_RS15950	0.39	-1.3
3,461,560	+		DZA65_RS15950	0.44	+0.4
3,461,560	+		DZA65_RS15950	0.44	+1.3
3,461,561	-		DZA65_RS15950	0.44	+1.2
3,461,617	+		DZA65_RS15950	0.47	+3.8
3,461,618	-		DZA65_RS15950	0.47	+2.3
3,461,618	-		DZA65_RS15950	0.47	+1.3
3,461,636	-		DZA65_RS15950	0.48	+0.3
3,461,655	+		DZA65_RS15950	0.49	+0.7
3,461,655	+		DZA65_RS15950	0.49	-2.1
3,461,655	+		DZA65_RS15950	0.49	-2.2
3,461,655	+		DZA65_RS15950	0.49	+0.8
3,461,655	+		DZA65_RS15950	0.49	-1.4
3,461,655	+		DZA65_RS15950	0.49	-1.7
3,461,655	+		DZA65_RS15950	0.49	+0.8
3,461,655	+		DZA65_RS15950	0.49	+3.1
3,461,655	+		DZA65_RS15950	0.49	-2.3
3,461,656	-		DZA65_RS15950	0.49	+1.5
3,461,656	-		DZA65_RS15950	0.49	+1.9
3,461,656	-		DZA65_RS15950	0.49	-0.2
3,461,656	-		DZA65_RS15950	0.49	+0.9
3,461,656	-		DZA65_RS15950	0.49	-1.7
3,461,821	-		DZA65_RS15950	0.59	+0.3
3,461,821	-		DZA65_RS15950	0.59	-1.2
3,461,826	+		DZA65_RS15950	0.59	-2.3
3,461,826	+		DZA65_RS15950	0.59	-3.0
3,461,827	-		DZA65_RS15950	0.60	-1.7
3,462,093	+		DZA65_RS15950	0.75	-0.5
3,462,093	+		DZA65_RS15950	0.75	-0.3
3,462,093	+		DZA65_RS15950	0.75	-1.9
3,462,094	-		DZA65_RS15950	0.76	+0.3
3,462,094	-		DZA65_RS15950	0.76	-2.3
3,462,122	-		DZA65_RS15950	0.77	-1.1
3,462,122	-		DZA65_RS15950	0.77	+0.5
3,462,132	+		DZA65_RS15950	0.78	+2.6
3,462,132	+		DZA65_RS15950	0.78	+0.9
3,462,132	+		DZA65_RS15950	0.78	-0.4
3,462,132	+		DZA65_RS15950	0.78	-0.1
3,462,132	+		DZA65_RS15950	0.78	+0.9
3,462,132	+		DZA65_RS15950	0.78	+0.9
3,462,133	-		DZA65_RS15950	0.78	+2.2
3,462,133	-		DZA65_RS15950	0.78	+0.2
3,462,164	+		DZA65_RS15950	0.80	+0.9
3,462,165	-		DZA65_RS15950	0.80	-1.1
3,462,165	-		DZA65_RS15950	0.80	-0.8
3,462,165	-				-1.1
3,462,222	+		DZA65_RS15950	0.83	+1.5
3,462,223	-		DZA65_RS15950	0.83	+0.8
3,462,223	-		DZA65_RS15950	0.83	-0.7
3,462,223	-		DZA65_RS15950	0.83	+0.9
3,462,223	-		DZA65_RS15950	0.83	-0.4
3,462,226	-		DZA65_RS15950	0.83	-1.2
3,462,275	-		DZA65_RS15950	0.86	-0.7
3,462,292	+		DZA65_RS15950	0.87	-2.4
3,462,293	-		DZA65_RS15950	0.87	+1.2
3,462,315	+		DZA65_RS15950	0.89	-2.3
3,462,315	+		DZA65_RS15950	0.89	+0.3
3,462,315	+		DZA65_RS15950	0.89	-1.0
3,462,315	+		DZA65_RS15950	0.89	+2.5
3,462,316	-		DZA65_RS15950	0.89	-0.1
3,462,316	-		DZA65_RS15950	0.89	+0.2
3,462,316	-		DZA65_RS15950	0.89	-0.1
3,462,316	-		DZA65_RS15950	0.89	-1.4
3,462,316	-		DZA65_RS15950	0.89	-1.4
3,462,316	-		DZA65_RS15950	0.89	-2.5
3,462,316	-		DZA65_RS15950	0.89	-2.4
3,462,316	-		DZA65_RS15950	0.89	+3.3
3,462,356	+				+0.9
3,462,356	+				+2.5
3,462,356	+				+2.9
3,462,357	-				-0.4
3,462,404	-				+0.1
3,462,476	+				-1.4
3,462,505	+				-1.7
3,462,508	-				+0.5
3,462,508	-				+2.5
3,462,521	-				+3.2
3,462,521	-				-3.1
3,462,521	-				-0.4
3,462,565	+				-2.5
3,462,565	+				-1.4
3,462,566	-				+0.5
3,462,566	-				-1.4
3,462,577	-				+0.9
3,462,579	-				-3.0
3,462,583	+				-0.2
3,462,599	+				-0.9
3,462,599	+				+1.0
3,462,599	+				-0.9
3,462,600	-				-0.7
3,462,600	-				-1.7
3,462,600	-				+1.7
3,462,600	-				+0.9
3,462,630	-				+0.0
3,462,640	+				+1.6
3,462,640	+				-0.7
3,462,640	+				+0.4
3,462,641	-				-1.1
3,462,641	-				-0.7
3,462,731	+				+0.9
3,462,734	+				+2.2
3,462,734	+				-3.6
3,462,734	+				-2.3
3,462,735	-				+0.1
3,462,735	-				+2.5
3,462,735	-				-1.1
3,462,735	-				+0.1
3,462,735	-				-0.8
3,462,737	+				+2.3
3,462,737	+				-1.7
3,462,737	+				-0.1
3,462,738	-				+0.7
3,462,738	-				-1.1
3,462,738	-				-1.4
3,462,782	+				+0.2
3,462,783	-				+0.3
3,462,783	-				-0.9
3,462,803	+				+0.5
3,462,803	+				+0.3
3,462,803	+				+1.5
3,462,803	+				+1.7
3,462,803	+				-1.4
3,462,803	+				-1.7
3,462,803	+				-1.7
3,462,804	-				+1.5
3,462,804	-				-0.1
3,462,804	-				+4.2
3,462,804	-				+1.6
3,462,812	+				-0.9
3,462,812	+				-2.8
3,462,812	+				+0.2
3,462,812	+				+1.2
3,462,812	+				+0.4
3,462,812	+				-1.9
3,462,812	+				-0.4
3,462,812	+				-0.1
3,462,812	+				+0.3
3,462,812	+				-1.1
3,462,813	-				+1.1
3,462,813	-				+0.9
3,462,813	-				-0.4
3,462,813	-				+1.8
3,462,813	-				-0.1
3,462,813	-				-1.2
3,462,813	-				+2.0
3,462,813	-				+1.5
3,462,813	-				-2.5
3,462,813	-				-0.7
3,462,813	-				-1.4
3,462,848	+				-1.5
3,462,848	+				-0.9