Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15860

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,444,331	+		DZA65_RS15855	0.49	+0.4
3,444,331	+		DZA65_RS15855	0.49	+1.4
3,444,613	+		DZA65_RS15855	0.67	+1.6
3,444,700	+		DZA65_RS15855	0.72	+2.5
3,444,700	+		DZA65_RS15855	0.72	-0.4
3,444,700	+		DZA65_RS15855	0.72	-1.1
3,444,700	+		DZA65_RS15855	0.72	+0.7
3,444,700	+		DZA65_RS15855	0.72	-0.7
3,444,836	+		DZA65_RS15855	0.81	-1.1
3,444,836	+		DZA65_RS15855	0.81	-1.6
3,444,836	+		DZA65_RS15855	0.81	-0.1
3,444,837	-		DZA65_RS15855	0.81	+2.9
3,444,837	-		DZA65_RS15855	0.81	-1.4
3,444,837	-		DZA65_RS15855	0.81	+1.9
3,444,837	-		DZA65_RS15855	0.81	+0.7
3,444,901	+		DZA65_RS15855	0.85	+0.9
3,444,901	+		DZA65_RS15855	0.85	+3.0
3,444,901	+		DZA65_RS15855	0.85	+0.5
3,444,901	+		DZA65_RS15855	0.85	+1.9
3,444,950	+		DZA65_RS15855	0.88	-1.3
3,444,950	+		DZA65_RS15855	0.88	+0.3
3,444,951	-		DZA65_RS15855	0.88	-1.9
3,444,978	+		DZA65_RS15855	0.90	+0.5
3,444,979	-		DZA65_RS15855	0.90	-0.1
3,444,979	-		DZA65_RS15855	0.90	-0.7
3,445,001	+				-1.1
3,445,033	+				+0.3
3,445,033	+				-0.7
3,445,033	+				-0.4
3,445,033	+				-1.5
3,445,034	-				-1.7
3,445,034	-				-1.3
3,445,034	-				-1.2
3,445,034	-				-0.6
3,445,152	+				+2.6
3,445,152	+				+2.0
3,445,152	+				+2.0
3,445,152	+				-1.1
3,445,152	+				+2.0
3,445,152	+				+0.6
3,445,152	+				+1.1
3,445,152	+				-2.4
3,445,152	+				-1.7
3,445,153	-				+1.4
3,445,153	-				-0.9
3,445,153	-				-1.3
3,445,153	-				-2.6
3,445,153	-				-2.1
3,445,153	-				-1.1
3,445,153	-				-2.8
3,445,153	-				-0.1
3,445,153	-				-0.7
3,445,153	-				-3.0
3,445,153	-				-1.4
3,445,154	+				-0.1
3,445,154	+				-0.1
3,445,155	-				-0.9
3,445,155	-				+0.3
3,445,155	-				-1.9
3,445,155	-				+0.7
3,445,155	-				+1.4
3,445,500	+		DZA65_RS15860	0.45	-1.1
3,445,500	+		DZA65_RS15860	0.45	+0.7
3,445,500	+		DZA65_RS15860	0.45	-1.7
3,445,501	-		DZA65_RS15860	0.45	+2.2
3,445,501	-		DZA65_RS15860	0.45	+0.4
3,445,501	-		DZA65_RS15860	0.45	+0.9
3,445,567	+		DZA65_RS15860	0.53	-2.1
3,445,567	+		DZA65_RS15860	0.53	-0.7
3,445,567	+		DZA65_RS15860	0.53	+2.8
3,445,568	-		DZA65_RS15860	0.53	-0.1
3,445,568	-		DZA65_RS15860	0.53	-0.5
3,445,568	-		DZA65_RS15860	0.53	-0.7
3,445,826	+		DZA65_RS15860	0.86	-2.8
3,445,855	+				-0.4
3,445,855	+				-0.2
3,445,856	-				+0.5
3,445,856	-				-0.1
3,445,897	-				-0.1
3,445,927	+				+1.2
3,445,927	+				-2.6
3,445,927	+				-0.7
3,445,928	-				-0.3
3,445,928	-				+0.5
3,445,928	-				-1.4
3,445,928	-				+1.1
3,446,001	+		DZA65_RS15865	0.10	-1.4
3,446,001	+		DZA65_RS15865	0.10	+0.6
3,446,002	-		DZA65_RS15865	0.11	-0.7
3,446,002	-		DZA65_RS15865	0.11	-0.4
3,446,002	-		DZA65_RS15865	0.11	+1.9
3,446,012	+		DZA65_RS15865	0.12	+1.5
3,446,012	+		DZA65_RS15865	0.12	-0.7
3,446,012	+		DZA65_RS15865	0.12	+1.5
3,446,032	+		DZA65_RS15865	0.15	-0.1
3,446,032	+		DZA65_RS15865	0.15	+2.9
3,446,032	+		DZA65_RS15865	0.15	-1.8
3,446,032	+				-0.9
3,446,032	+		DZA65_RS15865	0.15	-0.4
3,446,032	+		DZA65_RS15865	0.15	+0.2
3,446,033	-		DZA65_RS15865	0.15	-1.7
3,446,033	-		DZA65_RS15865	0.15	-0.7
3,446,033	-		DZA65_RS15865	0.15	-0.6
3,446,033	-		DZA65_RS15865	0.15	+1.6
3,446,033	-				-0.7
3,446,033	-		DZA65_RS15865	0.15	-0.3
3,446,033	-		DZA65_RS15865	0.15	-0.7
3,446,033	-		DZA65_RS15865	0.15	-1.9
3,446,033	-		DZA65_RS15865	0.15	+0.9
3,446,033	-		DZA65_RS15865	0.15	-1.7
3,446,033	-		DZA65_RS15865	0.15	-0.8
3,446,071	+		DZA65_RS15865	0.20	+0.5
3,446,075	+		DZA65_RS15865	0.21	+1.1
3,446,075	+		DZA65_RS15865	0.21	+0.8
3,446,075	+		DZA65_RS15865	0.21	-1.9
3,446,075	+		DZA65_RS15865	0.21	-1.1
3,446,075	+		DZA65_RS15865	0.21	+0.6
3,446,075	+		DZA65_RS15865	0.21	+0.0
3,446,076	-		DZA65_RS15865	0.21	-2.1
3,446,076	-		DZA65_RS15865	0.21	-0.7
3,446,076	-		DZA65_RS15865	0.21	-0.5
3,446,076	-		DZA65_RS15865	0.21	+0.3
3,446,085	+		DZA65_RS15865	0.22	-2.1
3,446,313	-		DZA65_RS15865	0.54	-1.3
3,446,420	-		DZA65_RS15865	0.69	+0.8
3,446,422	+		DZA65_RS15865	0.69	-0.8
3,446,422	+		DZA65_RS15865	0.69	-0.1
3,446,422	+		DZA65_RS15865	0.69	+1.3
3,446,422	+		DZA65_RS15865	0.69	+4.7
3,446,422	+		DZA65_RS15865	0.69	+1.1
3,446,471	+		DZA65_RS15865	0.76	-0.7
3,446,471	+		DZA65_RS15865	0.76	-0.9
3,446,471	+		DZA65_RS15865	0.76	+1.7
3,446,471	+		DZA65_RS15865	0.76	+0.1
3,446,471	+		DZA65_RS15865	0.76	+0.1
3,446,471	+		DZA65_RS15865	0.76	+0.1
3,446,471	+		DZA65_RS15865	0.76	+0.3
3,446,471	+		DZA65_RS15865	0.76	+1.0
3,446,471	+		DZA65_RS15865	0.76	-1.1
3,446,471	+		DZA65_RS15865	0.76	+0.8
3,446,472	-		DZA65_RS15865	0.76	+2.6
3,446,472	-		DZA65_RS15865	0.76	-3.4
3,446,472	-		DZA65_RS15865	0.76	-1.6
3,446,472	-		DZA65_RS15865	0.76	+1.3
3,446,472	-		DZA65_RS15865	0.76	+0.1
3,446,472	-		DZA65_RS15865	0.76	-1.4
3,446,472	-		DZA65_RS15865	0.76	+1.5
3,446,472	-		DZA65_RS15865	0.76	-1.9
3,446,472	-		DZA65_RS15865	0.76	-0.5
3,446,473	+		DZA65_RS15865	0.76	+0.3
3,446,473	+		DZA65_RS15865	0.76	+1.6
3,446,473	+		DZA65_RS15865	0.76	+1.7
3,446,473	+		DZA65_RS15865	0.76	-0.7
3,446,473	+		DZA65_RS15865	0.76	-0.1
3,446,473	+		DZA65_RS15865	0.76	+1.4
3,446,473	+		DZA65_RS15865	0.76	+2.7
3,446,473	+		DZA65_RS15865	0.76	-0.5
3,446,473	+		DZA65_RS15865	0.76	+0.3
3,446,473	+		DZA65_RS15865	0.76	+0.3
3,446,473	+		DZA65_RS15865	0.76	-0.1
3,446,473	+		DZA65_RS15865	0.76	-1.4
3,446,473	+		DZA65_RS15865	0.76	-0.7
3,446,473	+		DZA65_RS15865	0.76	-0.7
3,446,474	-		DZA65_RS15865	0.76	+1.5
3,446,474	-		DZA65_RS15865	0.76	-1.4
3,446,474	-		DZA65_RS15865	0.76	-0.7
3,446,474	-		DZA65_RS15865	0.76	-0.3
3,446,474	-		DZA65_RS15865	0.76	-0.1
3,446,474	-		DZA65_RS15865	0.76	-3.4
3,446,474	-		DZA65_RS15865	0.76	-1.4
3,446,474	-		DZA65_RS15865	0.76	-0.1
3,446,474	-		DZA65_RS15865	0.76	-1.1
3,446,474	-		DZA65_RS15865	0.76	-0.8
3,446,474	-		DZA65_RS15865	0.76	-0.2
3,446,474	-		DZA65_RS15865	0.76	+1.9
3,446,505	-		DZA65_RS15865	0.81	+0.6
3,446,505	-		DZA65_RS15865	0.81	-1.2
3,446,601	+				+1.4
3,446,602	-				+0.3
3,446,662	+				-0.7
3,446,662	+				-0.5
3,446,662	+				-0.9
3,446,663	-				-0.0
3,446,670	+				+0.5
3,446,671	-				+1.8
3,446,671	-				-0.7
3,446,736	+		DZA65_RS15870	0.13	+0.3
3,446,736	+		DZA65_RS15870	0.13	+2.5
3,446,736	+		DZA65_RS15870	0.13	+1.9
3,446,736	+		DZA65_RS15870	0.13	+0.0
3,446,736	+		DZA65_RS15870	0.13	+0.9
3,446,737	-		DZA65_RS15870	0.14	-2.1
3,446,737	-		DZA65_RS15870	0.14	+2.3
3,446,737	-		DZA65_RS15870	0.14	-2.1
3,446,757	+		DZA65_RS15870	0.16	-0.9
3,446,769	+		DZA65_RS15870	0.18	-1.4
3,446,769	+		DZA65_RS15870	0.18	-2.4
3,446,769	+		DZA65_RS15870	0.18	-0.7
3,446,769	+		DZA65_RS15870	0.18	+3.0
3,446,770	-		DZA65_RS15870	0.18	-1.7