Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15835

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,438,906	+		DZA65_RS15830	0.50	-0.4
3,439,033	+				-2.1
3,439,033	+		DZA65_RS15830	0.58	-1.7
3,439,033	+		DZA65_RS15830	0.58	-0.3
3,439,033	+		DZA65_RS15830	0.58	-1.4
3,439,033	+		DZA65_RS15830	0.58	-0.4
3,439,034	-		DZA65_RS15830	0.58	-1.9
3,439,034	-		DZA65_RS15830	0.58	-1.4
3,439,034	-		DZA65_RS15830	0.58	+0.9
3,439,034	-		DZA65_RS15830	0.58	+0.9
3,439,085	-		DZA65_RS15830	0.61	-0.1
3,439,096	+		DZA65_RS15830	0.61	+1.4
3,439,096	+		DZA65_RS15830	0.61	-0.5
3,439,096	+		DZA65_RS15830	0.61	+0.9
3,439,096	+		DZA65_RS15830	0.61	+0.1
3,439,097	-		DZA65_RS15830	0.62	-0.5
3,439,097	-				-2.3
3,439,097	-		DZA65_RS15830	0.62	-0.7
3,439,097	-		DZA65_RS15830	0.62	-0.4
3,439,098	+		DZA65_RS15830	0.62	-1.1
3,439,098	+		DZA65_RS15830	0.62	-0.7
3,439,107	+		DZA65_RS15830	0.62	+1.3
3,439,108	-		DZA65_RS15830	0.62	+1.7
3,439,258	-		DZA65_RS15830	0.71	-1.4
3,439,290	+		DZA65_RS15830	0.73	+0.3
3,439,290	+		DZA65_RS15830	0.73	+1.7
3,439,290	+		DZA65_RS15830	0.73	+2.5
3,439,290	+		DZA65_RS15830	0.73	-1.4
3,439,290	+		DZA65_RS15830	0.73	-0.1
3,439,290	+		DZA65_RS15830	0.73	-2.1
3,439,291	-				-1.1
3,439,291	-		DZA65_RS15830	0.73	+0.9
3,439,291	-		DZA65_RS15830	0.73	+2.3
3,439,291	-		DZA65_RS15830	0.73	+0.0
3,439,291	-		DZA65_RS15830	0.73	-0.8
3,439,291	-		DZA65_RS15830	0.73	-0.0
3,439,324	-		DZA65_RS15830	0.75	+0.1
3,439,324	-		DZA65_RS15830	0.75	-0.4
3,439,353	+		DZA65_RS15830	0.77	-0.3
3,439,353	+		DZA65_RS15830	0.77	-2.4
3,439,353	+		DZA65_RS15830	0.77	+2.8
3,439,354	-		DZA65_RS15830	0.77	+2.5
3,439,354	-		DZA65_RS15830	0.77	+1.2
3,439,420	+		DZA65_RS15830	0.81	+1.0
3,439,420	+		DZA65_RS15830	0.81	+0.0
3,439,421	-		DZA65_RS15830	0.81	-1.7
3,439,585	-				-0.3
3,439,585	-				-1.9
3,439,647	+				-0.0
3,439,786	+				+0.2
3,439,787	-				-0.6
3,439,787	-				-1.1
3,439,787	-				+0.7
3,439,787	-				+3.6
3,439,901	+				+0.9
3,439,901	+				-3.0
3,439,901	+				+1.5
3,439,902	-				-1.1
3,439,902	-				-1.4
3,439,902	-				-0.1
3,439,902	-				-2.6
3,439,902	-				-1.7
3,440,013	-		DZA65_RS15835	0.16	+1.2
3,440,045	-		DZA65_RS15835	0.18	-1.1
3,440,045	-		DZA65_RS15835	0.18	-1.4
3,440,045	-		DZA65_RS15835	0.18	-1.9
3,440,084	+		DZA65_RS15835	0.21	-0.6
3,440,085	-		DZA65_RS15835	0.21	-0.0
3,440,160	+		DZA65_RS15835	0.26	+1.1
3,440,421	+		DZA65_RS15835	0.42	+0.9
3,440,421	+		DZA65_RS15835	0.42	+1.3
3,440,421	+		DZA65_RS15835	0.42	-0.7
3,440,421	+		DZA65_RS15835	0.42	-0.1
3,440,421	+		DZA65_RS15835	0.42	+2.0
3,440,422	-		DZA65_RS15835	0.42	-1.9
3,440,422	-		DZA65_RS15835	0.42	+1.8
3,440,422	-		DZA65_RS15835	0.42	-3.4
3,440,422	-		DZA65_RS15835	0.42	+0.7
3,440,422	-		DZA65_RS15835	0.42	+0.3
3,440,422	-		DZA65_RS15835	0.42	+1.4
3,440,422	-		DZA65_RS15835	0.42	-0.7
3,440,471	-		DZA65_RS15835	0.46	-2.1
3,440,498	+		DZA65_RS15835	0.47	-1.3
3,440,498	+		DZA65_RS15835	0.47	+0.5
3,440,499	-		DZA65_RS15835	0.47	+0.9
3,440,499	-		DZA65_RS15835	0.47	-2.6
3,440,534	+		DZA65_RS15835	0.50	-2.6
3,440,535	-		DZA65_RS15835	0.50	-0.5
3,440,535	-		DZA65_RS15835	0.50	-0.8
3,440,990	+		DZA65_RS15835	0.79	+0.9
3,441,149	-		DZA65_RS15835	0.89	-0.1
3,441,250	+				+0.8
3,441,298	+				-0.1
3,441,299	-				-0.7
3,441,317	+				-1.3
3,441,317	+				+0.4
3,441,317	+				+2.8
3,441,318	-				-1.0
3,441,319	+				+2.3
3,441,319	+				-2.4
3,441,319	+				+1.8
3,441,319	+				-1.4
3,441,319	+				+1.0
3,441,320	-				-1.3
3,441,323	+				-1.9
3,441,334	-				-1.7
3,441,341	+				+1.5
3,441,407	+				-0.0
3,441,511	+		DZA65_RS15840	0.63	+1.3
3,441,517	+		DZA65_RS15840	0.67	-0.0
3,441,517	+		DZA65_RS15840	0.67	-2.1
3,441,517	+		DZA65_RS15840	0.67	-0.5
3,441,517	+		DZA65_RS15840	0.67	+1.3
3,441,518	-		DZA65_RS15840	0.68	+0.6
3,441,518	-		DZA65_RS15840	0.68	-1.7
3,441,519	+		DZA65_RS15840	0.69	-2.8
3,441,519	+		DZA65_RS15840	0.69	-0.6
3,441,519	+				-1.4
3,441,519	+		DZA65_RS15840	0.69	+2.9
3,441,519	+		DZA65_RS15840	0.69	+2.9
3,441,519	+		DZA65_RS15840	0.69	-2.7
3,441,519	+		DZA65_RS15840	0.69	+3.7
3,441,519	+		DZA65_RS15840	0.69	-2.7
3,441,519	+		DZA65_RS15840	0.69	-2.1
3,441,519	+		DZA65_RS15840	0.69	-2.3
3,441,519	+		DZA65_RS15840	0.69	+1.9
3,441,519	+		DZA65_RS15840	0.69	-4.2
3,441,519	+		DZA65_RS15840	0.69	+0.4
3,441,519	+		DZA65_RS15840	0.69	-1.5
3,441,519	+		DZA65_RS15840	0.69	-0.1
3,441,519	+		DZA65_RS15840	0.69	-1.9
3,441,520	-		DZA65_RS15840	0.70	+1.7
3,441,520	-		DZA65_RS15840	0.70	-0.1
3,441,520	-		DZA65_RS15840	0.70	+1.1
3,441,520	-		DZA65_RS15840	0.70	-1.8
3,441,520	-		DZA65_RS15840	0.70	+0.5
3,441,520	-		DZA65_RS15840	0.70	-1.6
3,441,520	-		DZA65_RS15840	0.70	+1.7
3,441,520	-		DZA65_RS15840	0.70	+0.9
3,441,520	-		DZA65_RS15840	0.70	-2.8
3,441,559	+				+0.1
3,441,567	+				-1.4
3,441,567	+				+2.6
3,441,568	-				-1.9
3,441,568	-				+0.5
3,441,568	-				-1.1
3,441,569	+				-1.7
3,441,581	+				+0.5
3,441,581	+				-0.3
3,441,582	-				-1.4
3,441,611	+				+0.4
3,441,612	-				+0.3
3,441,612	-				-0.7
3,441,801	+				-0.1
3,441,802	-				-1.7
3,441,802	-				+1.0
3,441,804	+				+2.0
3,441,804	+				+2.7
3,441,804	+				-0.7
3,441,804	+				-0.1
3,441,804	+				-2.3
3,441,804	+				-0.0
3,441,805	-				+1.6
3,441,805	-				-0.4
3,441,805	-				+0.4
3,441,805	-				-1.9
3,441,857	+		DZA65_RS15845	0.11	-1.1
3,441,857	+		DZA65_RS15845	0.11	+0.0
3,441,857	+		DZA65_RS15845	0.11	-1.0
3,441,857	+		DZA65_RS15845	0.11	-1.1
3,441,857	+		DZA65_RS15845	0.11	-0.7
3,441,858	-		DZA65_RS15845	0.11	+0.9
3,441,858	-		DZA65_RS15845	0.11	+1.8
3,441,858	-		DZA65_RS15845	0.11	-2.6
3,441,858	-		DZA65_RS15845	0.11	-2.1
3,441,858	-		DZA65_RS15845	0.11	+0.6
3,441,955	+		DZA65_RS15845	0.24	-0.7
3,441,955	+		DZA65_RS15845	0.24	-1.7
3,441,956	-		DZA65_RS15845	0.24	-0.7
3,441,978	+		DZA65_RS15845	0.27	-1.3
3,441,978	+		DZA65_RS15845	0.27	-1.9
3,441,978	+		DZA65_RS15845	0.27	+0.7
3,442,045	+		DZA65_RS15845	0.36	+0.5
3,442,045	+		DZA65_RS15845	0.36	+1.3
3,442,045	+		DZA65_RS15845	0.36	+0.9
3,442,045	+		DZA65_RS15845	0.36	-1.1
3,442,045	+		DZA65_RS15845	0.36	-2.4
3,442,046	-		DZA65_RS15845	0.36	+1.5
3,442,046	-		DZA65_RS15845	0.36	-1.4
3,442,046	-		DZA65_RS15845	0.36	-0.1
3,442,046	-		DZA65_RS15845	0.36	-1.3
3,442,048	+		DZA65_RS15845	0.36	+1.9
3,442,048	+		DZA65_RS15845	0.36	+2.5
3,442,049	-		DZA65_RS15845	0.36	-3.0
3,442,049	-		DZA65_RS15845	0.36	-1.4
3,442,049	-		DZA65_RS15845	0.36	-0.7
3,442,049	-		DZA65_RS15845	0.36	+1.9
3,442,049	-		DZA65_RS15845	0.36	-1.2
3,442,192	+		DZA65_RS15845	0.55	+0.6
3,442,193	-		DZA65_RS15845	0.55	+0.5
3,442,215	+		DZA65_RS15845	0.58	-1.2
3,442,219	+		DZA65_RS15845	0.58	+1.1
3,442,219	+		DZA65_RS15845	0.58	-1.7
3,442,219	+		DZA65_RS15845	0.58	-2.9
3,442,220	-		DZA65_RS15845	0.58	-1.9
3,442,245	+		DZA65_RS15845	0.62	-1.4
3,442,245	+		DZA65_RS15845	0.62	+2.0
3,442,245	+		DZA65_RS15845	0.62	+0.5
3,442,245	+		DZA65_RS15845	0.62	+1.3
3,442,246	-		DZA65_RS15845	0.62	+0.2
3,442,246	-		DZA65_RS15845	0.62	-2.3
3,442,246	-		DZA65_RS15845	0.62	-2.1
3,442,297	-		DZA65_RS15845	0.68	-1.5
3,442,297	-		DZA65_RS15845	0.68	+0.0