Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14895

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,244,947	-		DZA65_RS14890	0.41	-0.6
3,244,992	+		DZA65_RS14890	0.44	-0.2
3,244,992	+		DZA65_RS14890	0.44	-1.5
3,244,992	+		DZA65_RS14890	0.44	+4.7
3,244,992	+		DZA65_RS14890	0.44	-0.5
3,244,992	+		DZA65_RS14890	0.44	+0.1
3,244,992	+		DZA65_RS14890	0.44	+0.4
3,244,993	-		DZA65_RS14890	0.44	-2.2
3,244,993	-		DZA65_RS14890	0.44	-0.8
3,244,993	-		DZA65_RS14890	0.44	-1.8
3,244,993	-		DZA65_RS14890	0.44	-0.2
3,245,045	+		DZA65_RS14890	0.47	-0.8
3,245,046	-		DZA65_RS14890	0.47	-1.3
3,245,046	-		DZA65_RS14890	0.47	-0.6
3,245,109	-		DZA65_RS14890	0.51	-2.0
3,245,109	-		DZA65_RS14890	0.51	+2.5
3,245,109	-		DZA65_RS14890	0.51	+2.2
3,245,180	+		DZA65_RS14890	0.55	-1.2
3,245,180	+		DZA65_RS14890	0.55	+0.3
3,245,180	+		DZA65_RS14890	0.55	-0.2
3,245,180	+		DZA65_RS14890	0.55	-1.8
3,245,181	-		DZA65_RS14890	0.55	+0.5
3,245,181	-		DZA65_RS14890	0.55	+2.2
3,245,181	-		DZA65_RS14890	0.55	-1.1
3,245,181	-		DZA65_RS14890	0.55	+0.5
3,245,225	-		DZA65_RS14890	0.57	+1.3
3,245,228	+		DZA65_RS14890	0.58	-1.8
3,245,228	+		DZA65_RS14890	0.58	+1.9
3,245,228	+		DZA65_RS14890	0.58	-2.9
3,245,228	+		DZA65_RS14890	0.58	-2.9
3,245,228	+		DZA65_RS14890	0.58	-0.2
3,245,229	-		DZA65_RS14890	0.58	+0.9
3,245,229	-		DZA65_RS14890	0.58	-2.4
3,245,382	-		DZA65_RS14890	0.67	-2.9
3,245,627	+		DZA65_RS14890	0.81	-0.8
3,245,628	-		DZA65_RS14890	0.81	-1.7
3,245,684	+		DZA65_RS14890	0.84	-3.0
3,245,684	+				-0.2
3,245,684	+		DZA65_RS14890	0.84	-2.0
3,245,684	+		DZA65_RS14890	0.84	-2.2
3,245,684	+		DZA65_RS14890	0.84	-2.0
3,245,684	+		DZA65_RS14890	0.84	-1.8
3,245,685	-		DZA65_RS14890	0.84	+0.7
3,245,685	-		DZA65_RS14890	0.84	+1.7
3,245,752	+		DZA65_RS14890	0.88	+2.2
3,245,752	+		DZA65_RS14890	0.88	+2.7
3,245,753	-		DZA65_RS14890	0.88	-1.6
3,245,753	-		DZA65_RS14890	0.88	-2.0
3,245,761	-		DZA65_RS14890	0.89	-0.6
3,245,775	+		DZA65_RS14890	0.90	+0.8
3,245,775	+		DZA65_RS14890	0.90	+0.2
3,245,776	-		DZA65_RS14890	0.90	+1.2
3,245,776	-		DZA65_RS14890	0.90	+2.3
3,245,776	-		DZA65_RS14890	0.90	-0.4
3,245,844	+				+2.0
3,245,844	+				-2.1
3,245,844	+				+0.0
3,245,844	+				-0.7
3,245,844	+				-1.6
3,245,844	+				-2.1
3,245,844	+				+1.0
3,245,844	+				+2.5
3,245,844	+				-0.2
3,245,845	-				+1.4
3,245,845	-				-0.5
3,245,845	-				+0.5
3,245,845	-				+0.8
3,245,845	-				-1.1
3,245,957	+				-0.2
3,245,957	+				+2.6
3,245,958	-				+0.8
3,245,958	-				-0.2
3,245,958	-				-1.7
3,245,977	+				+1.0
3,245,977	+				-0.2
3,245,977	+				+0.2
3,245,977	+				+1.8
3,245,977	+				-2.1
3,245,977	+				-0.2
3,245,977	+				-2.2
3,245,978	-				+1.2
3,245,978	-				-2.1
3,245,978	-				+1.3
3,245,978	-				+3.0
3,245,978	-				+0.3
3,245,978	-				-1.2
3,245,978	-				-1.6
3,245,978	-				-1.0
3,245,978	-				-1.6
3,245,978	-				-0.2
3,246,030	+				+0.1
3,246,030	+				-0.8
3,246,031	-				+0.4
3,246,031	-				-0.2
3,246,031	-				-0.3
3,246,031	-				+3.0
3,246,031	-				+1.5
3,246,031	-				-1.8
3,246,031	-				-1.6
3,246,093	+		DZA65_RS14895	0.14	+2.9
3,246,093	+		DZA65_RS14895	0.14	-1.1
3,246,093	+		DZA65_RS14895	0.14	-1.8
3,246,094	-		DZA65_RS14895	0.14	+1.6
3,246,132	+		DZA65_RS14895	0.17	+0.9
3,246,133	-		DZA65_RS14895	0.17	+2.6
3,246,320	+		DZA65_RS14895	0.33	-0.7
3,246,320	+		DZA65_RS14895	0.33	-2.7
3,246,320	+		DZA65_RS14895	0.33	+0.8
3,246,320	+		DZA65_RS14895	0.33	-1.2
3,246,321	-		DZA65_RS14895	0.33	+0.1
3,246,321	-		DZA65_RS14895	0.33	+2.3
3,246,321	-		DZA65_RS14895	0.33	+3.3
3,246,321	-		DZA65_RS14895	0.33	+1.3
3,246,321	-		DZA65_RS14895	0.33	-0.8
3,246,321	-		DZA65_RS14895	0.33	-2.1
3,246,321	-		DZA65_RS14895	0.33	-0.8
3,246,321	-		DZA65_RS14895	0.33	-0.8
3,246,378	-		DZA65_RS14895	0.37	-0.8
3,246,510	+		DZA65_RS14895	0.48	-1.2
3,246,510	+		DZA65_RS14895	0.48	+0.2
3,246,510	+		DZA65_RS14895	0.48	+0.2
3,246,510	+		DZA65_RS14895	0.48	-1.5
3,246,510	+		DZA65_RS14895	0.48	+0.2
3,246,511	-		DZA65_RS14895	0.48	+0.6
3,246,535	+		DZA65_RS14895	0.50	-0.8
3,246,535	+		DZA65_RS14895	0.50	+0.8
3,246,535	+		DZA65_RS14895	0.50	+1.8
3,246,535	+		DZA65_RS14895	0.50	-0.2
3,246,535	+		DZA65_RS14895	0.50	+0.3
3,246,535	+		DZA65_RS14895	0.50	+0.0
3,246,535	+		DZA65_RS14895	0.50	+0.5
3,246,536	-		DZA65_RS14895	0.51	+0.6
3,246,536	-		DZA65_RS14895	0.51	+0.2
3,246,537	+		DZA65_RS14895	0.51	+0.8
3,246,537	+		DZA65_RS14895	0.51	+1.4
3,246,537	+		DZA65_RS14895	0.51	+1.6
3,246,705	+		DZA65_RS14895	0.65	-2.1
3,246,705	+		DZA65_RS14895	0.65	-0.8
3,246,705	+		DZA65_RS14895	0.65	-1.8
3,246,705	+		DZA65_RS14895	0.65	-0.2
3,246,705	+		DZA65_RS14895	0.65	-2.6
3,246,705	+		DZA65_RS14895	0.65	-1.4
3,246,705	+		DZA65_RS14895	0.65	-2.9
3,246,705	+		DZA65_RS14895	0.65	-2.1
3,246,705	+		DZA65_RS14895	0.65	-1.2
3,246,706	-		DZA65_RS14895	0.65	-0.2
3,246,706	-		DZA65_RS14895	0.65	+0.5
3,246,719	+		DZA65_RS14895	0.66	+1.8
3,246,768	+		DZA65_RS14895	0.70	+0.2
3,246,768	+		DZA65_RS14895	0.70	+1.8
3,246,768	+		DZA65_RS14895	0.70	-0.4
3,246,769	-		DZA65_RS14895	0.70	+1.3
3,246,769	-		DZA65_RS14895	0.70	+0.2
3,246,769	-		DZA65_RS14895	0.70	-0.8
3,246,769	-		DZA65_RS14895	0.70	-1.7
3,246,769	-		DZA65_RS14895	0.70	-0.7
3,246,774	+		DZA65_RS14895	0.70	-2.6
3,246,774	+		DZA65_RS14895	0.70	+1.2
3,246,877	-		DZA65_RS14895	0.79	+0.1
3,246,877	-		DZA65_RS14895	0.79	+0.6
3,246,877	-		DZA65_RS14895	0.79	-1.2
3,246,897	+		DZA65_RS14895	0.81	-1.6
3,246,897	+		DZA65_RS14895	0.81	-0.1
3,246,897	+		DZA65_RS14895	0.81	+2.4
3,246,897	+		DZA65_RS14895	0.81	+1.1
3,246,898	-		DZA65_RS14895	0.81	-1.1
3,246,898	-		DZA65_RS14895	0.81	+0.6
3,246,898	-		DZA65_RS14895	0.81	-2.2
3,246,898	-		DZA65_RS14895	0.81	+4.0
3,246,981	+				+0.2
3,247,031	+				-1.6
3,247,117	+				+1.0
3,247,118	-				+0.2
3,247,118	-				+1.8
3,247,237	+		DZA65_RS14900	0.12	-0.8
3,247,237	+		DZA65_RS14900	0.12	+0.0
3,247,238	-		DZA65_RS14900	0.12	-1.7
3,247,238	-		DZA65_RS14900	0.12	+0.2
3,247,238	-		DZA65_RS14900	0.12	-1.6
3,247,238	-		DZA65_RS14900	0.12	+0.4
3,247,253	+		DZA65_RS14900	0.13	-1.6
3,247,254	-		DZA65_RS14900	0.14	-2.1
3,247,254	-		DZA65_RS14900	0.14	-1.2
3,247,372	+		DZA65_RS14900	0.25	+2.3
3,247,372	+		DZA65_RS14900	0.25	+1.6
3,247,372	+		DZA65_RS14900	0.25	+0.8
3,247,372	+		DZA65_RS14900	0.25	+1.0
3,247,372	+		DZA65_RS14900	0.25	+0.5
3,247,373	-		DZA65_RS14900	0.25	-2.7
3,247,373	-		DZA65_RS14900	0.25	+1.3
3,247,373	-		DZA65_RS14900	0.25	+0.3
3,247,373	-		DZA65_RS14900	0.25	+0.9
3,247,373	-		DZA65_RS14900	0.25	+0.8
3,247,381	+		DZA65_RS14900	0.26	+1.4
3,247,381	+		DZA65_RS14900	0.26	+0.1
3,247,382	-		DZA65_RS14900	0.26	+0.1
3,247,402	+		DZA65_RS14900	0.28	-1.4
3,247,402	+		DZA65_RS14900	0.28	-2.6
3,247,402	+		DZA65_RS14900	0.28	+0.2
3,247,402	+		DZA65_RS14900	0.28	-1.8
3,247,402	+		DZA65_RS14900	0.28	-1.2
3,247,402	+				-0.1
3,247,402	+		DZA65_RS14900	0.28	-1.8
3,247,402	+		DZA65_RS14900	0.28	-0.8
3,247,402	+		DZA65_RS14900	0.28	-1.2
3,247,402	+		DZA65_RS14900	0.28	+1.3
3,247,402	+		DZA65_RS14900	0.28	+1.0
3,247,402	+		DZA65_RS14900	0.28	-0.3
3,247,403	-		DZA65_RS14900	0.28	+0.3
3,247,403	-		DZA65_RS14900	0.28	-1.0
3,247,403	-		DZA65_RS14900	0.28	-1.2
3,247,403	-		DZA65_RS14900	0.28	-2.0
3,247,403	-		DZA65_RS14900	0.28	+0.1
3,247,441	+		DZA65_RS14900	0.32	-1.6
3,247,441	+		DZA65_RS14900	0.32	-3.2
3,247,441	+		DZA65_RS14900	0.32	-1.1
3,247,441	+		DZA65_RS14900	0.32	+2.3
3,247,441	+		DZA65_RS14900	0.32	+0.2
3,247,441	+		DZA65_RS14900	0.32	-0.2
3,247,442	-		DZA65_RS14900	0.32	-0.7
3,247,442	-		DZA65_RS14900	0.32	-1.0
3,247,507	+		DZA65_RS14900	0.38	+1.3
3,247,508	-		DZA65_RS14900	0.39	-0.6
3,247,508	-		DZA65_RS14900	0.39	+0.8
3,247,627	+		DZA65_RS14900	0.50	-1.6
3,247,628	-		DZA65_RS14900	0.50	-1.1
3,247,628	-		DZA65_RS14900	0.50	+0.4
3,247,634	-		DZA65_RS14900	0.51	+0.3
3,247,634	-		DZA65_RS14900	0.51	+1.1
3,247,634	-		DZA65_RS14900	0.51	-1.2
3,247,634	-		DZA65_RS14900	0.51	+2.6
3,247,641	+		DZA65_RS14900	0.52	+1.2
3,247,641	+		DZA65_RS14900	0.52	+0.2
3,247,642	-		DZA65_RS14900	0.52	-1.6
3,247,669	+		DZA65_RS14900	0.54	+0.4
3,247,700	-		DZA65_RS14900	0.57	+0.8
3,247,763	+		DZA65_RS14900	0.64	+0.8
3,247,763	+		DZA65_RS14900	0.64	-2.2
3,247,764	-		DZA65_RS14900	0.64	+2.1
3,247,764	-		DZA65_RS14900	0.64	-0.7
3,247,764	-		DZA65_RS14900	0.64	-1.0
3,247,798	+		DZA65_RS14900	0.67	-2.4
3,247,799	-		DZA65_RS14900	0.67	-2.8
3,247,799	-		DZA65_RS14900	0.67	-0.1
3,247,799	-		DZA65_RS14900	0.67	-0.1
3,247,827	-		DZA65_RS14900	0.70	-1.6
3,247,851	+		DZA65_RS14900	0.72	+0.8
3,247,851	+		DZA65_RS14900	0.72	-1.2
3,248,011	+		DZA65_RS14900	0.88	-0.5
3,248,012	-		DZA65_RS14900	0.88	-2.8
3,248,012	-		DZA65_RS14900	0.88	-0.8