Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12685

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,711,749	+		DZA65_RS12680	0.28	-3.3
2,711,749	+				+0.7
2,711,749	+		DZA65_RS12680	0.28	+0.9
2,711,749	+		DZA65_RS12680	0.28	-1.9
2,711,749	+		DZA65_RS12680	0.28	+3.8
2,711,750	-		DZA65_RS12680	0.28	+1.7
2,711,750	-		DZA65_RS12680	0.28	+1.7
2,711,773	-		DZA65_RS12680	0.30	-1.3
2,711,795	+		DZA65_RS12680	0.32	-1.3
2,711,795	+		DZA65_RS12680	0.32	+0.1
2,711,796	-		DZA65_RS12680	0.32	+1.1
2,711,796	-		DZA65_RS12680	0.32	-3.3
2,711,796	-		DZA65_RS12680	0.32	-0.2
2,711,796	-		DZA65_RS12680	0.32	-0.0
2,711,796	-		DZA65_RS12680	0.32	-1.9
2,711,951	+		DZA65_RS12680	0.45	+2.3
2,711,951	+				-2.8
2,711,952	-				+2.2
2,712,041	+		DZA65_RS12680	0.53	+2.0
2,712,041	+		DZA65_RS12680	0.53	-0.8
2,712,041	+		DZA65_RS12680	0.53	-0.3
2,712,041	+		DZA65_RS12680	0.53	-0.7
2,712,042	-		DZA65_RS12680	0.53	-0.3
2,712,080	-		DZA65_RS12680	0.56	+0.5
2,712,104	-		DZA65_RS12680	0.58	-1.3
2,712,104	-		DZA65_RS12680	0.58	+0.1
2,712,104	-		DZA65_RS12680	0.58	-2.2
2,712,152	-		DZA65_RS12680	0.62	-1.2
2,712,152	-		DZA65_RS12680	0.62	-2.2
2,712,196	-		DZA65_RS12680	0.66	-2.3
2,712,254	+		DZA65_RS12680	0.71	-0.5
2,712,254	+		DZA65_RS12680	0.71	+1.1
2,712,254	+		DZA65_RS12680	0.71	+1.5
2,712,255	-		DZA65_RS12680	0.71	+1.8
2,712,255	-		DZA65_RS12680	0.71	+1.4
2,712,255	-		DZA65_RS12680	0.71	-1.5
2,712,255	-		DZA65_RS12680	0.71	+0.1
2,712,255	-		DZA65_RS12680	0.71	-0.3
2,712,255	-		DZA65_RS12680	0.71	+1.9
2,712,255	-		DZA65_RS12680	0.71	+0.3
2,712,255	-		DZA65_RS12680	0.71	-0.0
2,712,255	-		DZA65_RS12680	0.71	+0.3
2,712,288	+		DZA65_RS12680	0.74	-0.5
2,712,300	-		DZA65_RS12680	0.75	+0.7
2,712,300	-		DZA65_RS12680	0.75	-0.3
2,712,300	-		DZA65_RS12680	0.75	-0.3
2,712,300	-		DZA65_RS12680	0.75	+0.7
2,712,300	-		DZA65_RS12680	0.75	-3.3
2,712,300	-		DZA65_RS12680	0.75	+0.5
2,712,337	+		DZA65_RS12680	0.78	+0.7
2,712,338	-		DZA65_RS12680	0.78	+0.7
2,712,338	-		DZA65_RS12680	0.78	+2.6
2,712,338	-		DZA65_RS12680	0.78	-1.7
2,712,338	-		DZA65_RS12680	0.78	+1.7
2,712,447	+		DZA65_RS12680	0.87	+1.2
2,712,447	+		DZA65_RS12680	0.87	+1.8
2,712,508	+				-2.5
2,712,508	+				-1.2
2,712,525	+				+0.2
2,712,526	-				-1.3
2,712,526	-				+0.9
2,712,526	-				+1.1
2,712,551	+				-1.5
2,712,559	+				+0.7
2,712,559	+				-0.3
2,712,559	+				-2.8
2,712,560	-				-0.3
2,712,563	+				-0.6
2,712,563	+				-2.4
2,712,563	+				-0.9
2,712,564	-				+0.4
2,712,643	+				-1.7
2,712,654	+				+1.3
2,712,654	+				-0.3
2,712,655	-				+1.0
2,712,655	-				-0.9
2,712,655	-				-1.9
2,712,680	+				+0.3
2,712,680	+				+1.2
2,712,680	+				-1.9
2,712,680	+				-0.9
2,712,680	+				+2.5
2,712,680	+				-2.5
2,712,680	+				+0.8
2,712,680	+				+1.7
2,712,680	+				+0.7
2,712,681	-				-0.3
2,712,681	-				-0.3
2,712,681	-				+0.7
2,712,681	-				+1.1
2,712,681	-				+1.9
2,712,681	-				-0.9
2,712,681	-				+0.7
2,712,681	-				-1.7
2,712,681	-				+0.4
2,712,681	-				-0.7
2,712,681	-				-2.3
2,712,746	+		DZA65_RS12685	0.27	+3.0
2,712,746	+		DZA65_RS12685	0.27	-1.2
2,712,746	+		DZA65_RS12685	0.27	+0.9
2,712,884	+				-0.9
2,712,917	+				+0.6
2,713,024	+				+1.4
2,713,025	-				-1.3
2,713,027	+				+3.4
2,713,027	+				+0.5
2,713,027	+				+0.7
2,713,028	-				-0.9
2,713,054	-				+0.2
2,713,397	+				-0.9
2,713,397	+				-1.5
2,713,397	+				+1.1
2,713,416	+		DZA65_RS12690	0.10	-0.3
2,713,416	+		DZA65_RS12690	0.10	-0.1
2,713,416	+		DZA65_RS12690	0.10	+1.5
2,713,416	+		DZA65_RS12690	0.10	+0.7
2,713,465	-		DZA65_RS12690	0.14	+1.1
2,713,493	+		DZA65_RS12690	0.16	+1.8
2,713,493	+		DZA65_RS12690	0.16	-0.6
2,713,493	+				+1.8
2,713,493	+		DZA65_RS12690	0.16	-1.9
2,713,539	+		DZA65_RS12690	0.20	+0.1
2,713,568	+		DZA65_RS12690	0.22	-2.8
2,713,568	+		DZA65_RS12690	0.22	+1.1
2,713,568	+		DZA65_RS12690	0.22	+0.2
2,713,568	+		DZA65_RS12690	0.22	-0.6
2,713,568	+		DZA65_RS12690	0.22	-1.0
2,713,568	+		DZA65_RS12690	0.22	-0.9
2,713,569	-		DZA65_RS12690	0.22	-0.3
2,713,569	-		DZA65_RS12690	0.22	-2.1
2,713,569	-		DZA65_RS12690	0.22	-0.9
2,713,569	-		DZA65_RS12690	0.22	-1.3
2,713,572	+		DZA65_RS12690	0.22	-2.3
2,713,572	+		DZA65_RS12690	0.22	+0.5
2,713,572	+		DZA65_RS12690	0.22	-0.9
2,713,572	+		DZA65_RS12690	0.22	+1.8
2,713,572	+		DZA65_RS12690	0.22	+2.9
2,713,572	+		DZA65_RS12690	0.22	+1.0
2,713,572	+		DZA65_RS12690	0.22	-1.7
2,713,572	+		DZA65_RS12690	0.22	-2.1
2,713,573	-		DZA65_RS12690	0.22	+1.6
2,713,573	-		DZA65_RS12690	0.22	-1.3
2,713,573	-		DZA65_RS12690	0.22	-0.9
2,713,612	-		DZA65_RS12690	0.25	+1.5
2,713,612	-		DZA65_RS12690	0.25	-2.5
2,713,612	-		DZA65_RS12690	0.25	-2.3
2,713,612	-		DZA65_RS12690	0.25	-0.3
2,713,748	+		DZA65_RS12690	0.36	-1.7
2,713,748	+		DZA65_RS12690	0.36	-0.4
2,713,749	-		DZA65_RS12690	0.36	-1.1
2,713,788	+		DZA65_RS12690	0.39	-1.7
2,713,788	+		DZA65_RS12690	0.39	-0.1
2,713,788	+		DZA65_RS12690	0.39	-2.3
2,713,789	-		DZA65_RS12690	0.39	-0.9
2,713,789	-		DZA65_RS12690	0.39	-1.7
2,713,815	+		DZA65_RS12690	0.41	+1.1
2,713,815	+				+2.2
2,713,815	+				-0.9
2,713,815	+		DZA65_RS12690	0.41	-0.8
2,713,815	+		DZA65_RS12690	0.41	-1.1
2,713,815	+		DZA65_RS12690	0.41	-1.5
2,713,816	-		DZA65_RS12690	0.41	-0.3
2,713,816	-		DZA65_RS12690	0.41	-0.7
2,713,816	-		DZA65_RS12690	0.41	-1.7