Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11545

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,466,232	+		DZA65_RS11540	0.48	-1.4
2,466,390	-		DZA65_RS11540	0.61	-2.2
2,466,390	-		DZA65_RS11540	0.61	-1.1
2,466,434	+		DZA65_RS11540	0.64	-1.5
2,466,434	+		DZA65_RS11540	0.64	-0.9
2,466,434	+		DZA65_RS11540	0.64	+1.2
2,466,434	+		DZA65_RS11540	0.64	-1.7
2,466,435	-		DZA65_RS11540	0.64	-0.9
2,466,435	-		DZA65_RS11540	0.64	+2.2
2,466,435	-		DZA65_RS11540	0.64	+1.7
2,466,435	-		DZA65_RS11540	0.64	+0.6
2,466,441	-		DZA65_RS11540	0.65	+0.8
2,466,507	+		DZA65_RS11540	0.70	+0.5
2,466,508	-		DZA65_RS11540	0.70	-1.4
2,466,540	-		DZA65_RS11540	0.73	-0.4
2,466,540	-		DZA65_RS11540	0.73	-1.4
2,466,827	+				+0.3
2,466,828	-				+1.1
2,466,850	-				-2.2
2,466,921	-				-1.9
2,466,921	-				-0.5
2,466,937	+				+1.0
2,466,941	+				-0.9
2,466,941	+				+0.6
2,466,942	-				-1.7
2,466,942	-				-1.7
2,466,942	-				+1.2
2,466,949	+				-3.4
2,466,950	-				+1.9
2,466,957	+				+0.6
2,466,958	-				+1.2
2,466,976	+				+0.8
2,466,976	+				-0.9
2,466,977	-				-0.2
2,466,996	+				-1.8
2,466,997	-				+0.8
2,466,998	+				-0.9
2,466,998	+				+1.6
2,466,998	+				+1.4
2,466,998	+				+0.1
2,466,998	+				-1.6
2,466,998	+				-0.4
2,466,998	+				+0.4
2,466,999	-				-0.8
2,467,009	+				+0.3
2,467,009	+				-0.3
2,467,010	-				+1.5
2,467,010	-				-1.4
2,467,010	-				-0.2
2,467,013	-				-2.7
2,467,036	+				-0.1
2,467,036	+				-0.9
2,467,036	+				-0.4
2,467,036	+				+2.0
2,467,036	+				-2.7
2,467,037	-				+1.1
2,467,037	-				-0.5
2,467,139	+				+0.8
2,467,140	-				-1.9
2,467,145	+				-1.5
2,467,145	+				-1.7
2,467,145	+				+0.7
2,467,145	+				-0.7
2,467,149	+				-2.2
2,467,177	+				+1.1
2,467,177	+				-1.4
2,467,177	+				+0.6
2,467,179	+				-0.5
2,467,179	+				-2.2
2,467,179	+				-2.9
2,467,179	+				-0.6
2,467,179	+				-0.2
2,467,179	+				-0.4
2,467,179	+				+1.1
2,467,180	-				-1.4
2,467,180	-				-1.4
2,467,180	-				+0.6
2,467,180	-				-1.9
2,467,201	+				+1.0
2,467,201	+				-1.7
2,467,201	+				-0.4
2,467,201	+				-1.4
2,467,202	-				+0.1
2,467,202	-				+1.2
2,467,202	-				+0.5
2,467,202	-				+0.4
2,467,202	-				+0.6
2,467,202	-				+0.1
2,467,202	-				+0.1
2,467,202	-				-2.9
2,467,280	+				+1.4
2,467,280	+				-1.5
2,467,280	+				-1.8
2,467,280	+				+2.2
2,467,280	+				+1.2
2,467,281	-				+2.4
2,467,313	+				+0.2
2,467,313	+				+1.6
2,467,314	-				+1.7
2,467,328	+				-1.9
2,467,403	+		DZA65_RS11545	0.13	-0.4
2,467,403	+		DZA65_RS11545	0.13	-1.4
2,467,403	+		DZA65_RS11545	0.13	-2.2
2,467,403	+		DZA65_RS11545	0.13	-0.4
2,467,403	+		DZA65_RS11545	0.13	-1.9
2,467,403	+		DZA65_RS11545	0.13	+0.2
2,467,403	+				-0.9
2,467,404	-		DZA65_RS11545	0.14	-2.5
2,467,405	+		DZA65_RS11545	0.14	-0.1
2,467,406	-		DZA65_RS11545	0.14	-2.4
2,467,406	-		DZA65_RS11545	0.14	-1.2
2,467,406	-		DZA65_RS11545	0.14	+0.9
2,467,451	+		DZA65_RS11545	0.17	+0.6
2,467,451	+		DZA65_RS11545	0.17	-0.4
2,467,451	+		DZA65_RS11545	0.17	+0.6
2,467,451	+		DZA65_RS11545	0.17	-0.4
2,467,452	-		DZA65_RS11545	0.17	+2.1
2,467,452	-		DZA65_RS11545	0.17	-1.4
2,467,452	-		DZA65_RS11545	0.17	-0.4
2,467,452	-		DZA65_RS11545	0.17	+0.4
2,467,602	-		DZA65_RS11545	0.26	-0.9
2,467,643	+		DZA65_RS11545	0.29	-0.2
2,467,643	+		DZA65_RS11545	0.29	-1.2
2,467,643	+		DZA65_RS11545	0.29	-0.1
2,467,643	+		DZA65_RS11545	0.29	+1.9
2,467,644	-		DZA65_RS11545	0.29	+1.9
2,467,664	+		DZA65_RS11545	0.30	-2.2
2,467,665	-		DZA65_RS11545	0.31	+1.3
2,467,665	-		DZA65_RS11545	0.31	-1.7
2,467,665	-		DZA65_RS11545	0.31	-0.6
2,467,665	-		DZA65_RS11545	0.31	-1.9
2,467,665	-		DZA65_RS11545	0.31	-1.7
2,467,665	-		DZA65_RS11545	0.31	+1.0
2,467,665	-		DZA65_RS11545	0.31	-1.8
2,467,742	+		DZA65_RS11545	0.36	-2.5
2,467,742	+		DZA65_RS11545	0.36	+2.7
2,467,758	-		DZA65_RS11545	0.37	-1.4
2,467,759	+		DZA65_RS11545	0.37	-0.0
2,467,760	-		DZA65_RS11545	0.37	-0.5
2,467,821	-		DZA65_RS11545	0.41	-3.3
2,467,836	+		DZA65_RS11545	0.42	-0.9
2,467,837	-		DZA65_RS11545	0.42	+1.7
2,467,837	-		DZA65_RS11545	0.42	-1.4
2,467,837	-		DZA65_RS11545	0.42	-0.9
2,467,837	-		DZA65_RS11545	0.42	-1.7
2,467,932	-		DZA65_RS11545	0.48	-0.4
2,468,009	+		DZA65_RS11545	0.53	+1.1
2,468,010	-		DZA65_RS11545	0.53	+1.5
2,468,010	-		DZA65_RS11545	0.53	+0.1
2,468,069	+		DZA65_RS11545	0.57	+0.6
2,468,090	+		DZA65_RS11545	0.58	-1.9
2,468,119	+		DZA65_RS11545	0.60	+1.3
2,468,120	-		DZA65_RS11545	0.60	+1.1
2,468,120	-		DZA65_RS11545	0.60	-0.4
2,468,120	-		DZA65_RS11545	0.60	+0.9
2,468,156	+		DZA65_RS11545	0.62	-1.7
2,468,156	+		DZA65_RS11545	0.62	+1.1
2,468,181	-		DZA65_RS11545	0.64	+0.9
2,468,181	-		DZA65_RS11545	0.64	+0.2
2,468,181	-		DZA65_RS11545	0.64	+0.5
2,468,181	-		DZA65_RS11545	0.64	-0.1
2,468,183	+		DZA65_RS11545	0.64	+0.6
2,468,183	+		DZA65_RS11545	0.64	-0.4
2,468,183	+		DZA65_RS11545	0.64	-0.4
2,468,183	+		DZA65_RS11545	0.64	-0.1
2,468,183	+		DZA65_RS11545	0.64	-0.9
2,468,183	+				-1.4
2,468,183	+		DZA65_RS11545	0.64	-3.1
2,468,184	-		DZA65_RS11545	0.64	+0.1
2,468,184	-		DZA65_RS11545	0.64	+2.6
2,468,184	-		DZA65_RS11545	0.64	-1.8
2,468,184	-		DZA65_RS11545	0.64	-0.1
2,468,184	-		DZA65_RS11545	0.64	+0.9
2,468,184	-		DZA65_RS11545	0.64	-0.9
2,468,184	-		DZA65_RS11545	0.64	-0.9
2,468,184	-		DZA65_RS11545	0.64	-3.4
2,468,184	-		DZA65_RS11545	0.64	-1.5
2,468,184	-		DZA65_RS11545	0.64	-0.9
2,468,184	-		DZA65_RS11545	0.64	+0.4
2,468,184	-		DZA65_RS11545	0.64	-2.7
2,468,184	-		DZA65_RS11545	0.64	+0.1
2,468,184	-				+2.5
2,468,185	+		DZA65_RS11545	0.64	-2.2
2,468,185	+		DZA65_RS11545	0.64	+1.2
2,468,239	+		DZA65_RS11545	0.68	+0.4
2,468,239	+		DZA65_RS11545	0.68	-1.7
2,468,240	-		DZA65_RS11545	0.68	-1.4
2,468,240	-		DZA65_RS11545	0.68	-1.9
2,468,398	+		DZA65_RS11545	0.78	+0.6
2,468,398	+		DZA65_RS11545	0.78	+1.1
2,468,422	+		DZA65_RS11545	0.80	-0.2
2,468,422	+		DZA65_RS11545	0.80	-1.4
2,468,423	-		DZA65_RS11545	0.80	+1.4
2,468,423	-		DZA65_RS11545	0.80	+0.6
2,468,423	-		DZA65_RS11545	0.80	-1.7
2,468,423	-		DZA65_RS11545	0.80	-1.2
2,468,423	-		DZA65_RS11545	0.80	-0.4
2,468,423	-		DZA65_RS11545	0.80	+0.3
2,468,426	+		DZA65_RS11545	0.80	-2.2
2,468,426	+		DZA65_RS11545	0.80	-0.6
2,468,427	-		DZA65_RS11545	0.80	-0.4
2,468,427	-		DZA65_RS11545	0.80	-0.1
2,468,463	-		DZA65_RS11545	0.82	+0.6
2,468,521	+		DZA65_RS11545	0.86	-1.1
2,468,544	+		DZA65_RS11545	0.88	+1.2
2,468,573	+		DZA65_RS11545	0.90	-0.4
2,468,573	+		DZA65_RS11545	0.90	-0.9
2,468,573	+		DZA65_RS11545	0.90	-1.4
2,468,573	+		DZA65_RS11545	0.90	-2.2
2,468,573	+		DZA65_RS11545	0.90	-2.2
2,468,573	+		DZA65_RS11545	0.90	+1.6
2,468,574	-		DZA65_RS11545	0.90	+0.1
2,468,574	-		DZA65_RS11545	0.90	+0.1
2,468,574	-		DZA65_RS11545	0.90	-0.4
2,468,574	-		DZA65_RS11545	0.90	-1.4
2,468,574	-		DZA65_RS11545	0.90	+1.1
2,468,727	+				-0.8
2,468,727	+				-0.6
2,468,727	+				+1.8
2,468,728	-				-2.9
2,468,729	+				+0.6
2,468,729	+				+0.8
2,468,729	+				+2.8
2,468,730	-				-1.7
2,468,730	-				+1.2
2,468,747	+				+1.6
2,468,748	-				-0.6
2,468,748	-				-0.5
2,468,748	-				+1.7
2,468,769	-				-0.7
2,468,769	-				-0.9
2,468,771	+				-1.7
2,468,772	-				-1.9
2,468,809	-				+1.6
2,468,843	+				+1.5
2,468,844	-				-0.9
2,468,844	-				+1.5
2,468,948	+		DZA65_RS11550	0.15	+1.4
2,468,985	-		DZA65_RS11550	0.20	-1.4
2,469,027	-				+0.6
2,469,027	-		DZA65_RS11550	0.26	-0.9
2,469,027	-		DZA65_RS11550	0.26	+0.1
2,469,030	-		DZA65_RS11550	0.26	+1.6
2,469,047	+		DZA65_RS11550	0.28	-2.5
2,469,047	+		DZA65_RS11550	0.28	+1.6
2,469,047	+		DZA65_RS11550	0.28	-0.4
2,469,048	-		DZA65_RS11550	0.29	-2.2
2,469,048	-		DZA65_RS11550	0.29	-1.7
2,469,159	+		DZA65_RS11550	0.44	-2.4
2,469,240	+		DZA65_RS11550	0.55	-1.4
2,469,319	-		DZA65_RS11550	0.66	-2.2
2,469,513	+				+0.6
2,469,513	+				+1.6
2,469,556	-				-2.7
2,469,586	+				+0.3
2,469,590	-				+2.1
2,469,611	-				-0.5
2,469,624	+				-1.7
2,469,624	+				+0.6
2,469,624	+				-1.9
2,469,625	-				-1.3
2,469,633	+				-0.6
2,469,634	-				-2.7
2,469,634	-				+0.6
2,469,634	-				-0.2
2,469,634	-				+2.9
2,469,638	+				-1.7
2,469,639	-				+4.4
2,469,639	-				-0.9
2,469,666	-				+0.6
2,469,680	+				+0.4
2,469,680	+				+0.3
2,469,710	+				-0.4
2,469,710	+				-1.3