Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10175

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,149,929	-				-1.9
2,149,929	-				-0.0
2,150,025	+				-1.2
2,150,025	+				-0.4
2,150,025	+				+0.1
2,150,026	-				+0.6
2,150,026	-				+2.3
2,150,026	-				-1.4
2,150,026	-				-1.4
2,150,026	-				-0.7
2,150,027	+				+1.9
2,150,027	+				-0.1
2,150,027	+				-1.4
2,150,028	-				-2.4
2,150,028	-				-0.6
2,150,028	-				-1.2
2,150,028	-				+0.6
2,150,028	-				-0.1
2,150,077	-				+0.5
2,150,090	+				-1.9
2,150,090	+				+0.6
2,150,090	+				+1.3
2,150,090	+				+2.2
2,150,090	+				+0.6
2,150,091	-				+0.4
2,150,091	-				-0.0
2,150,091	-				-1.9
2,150,091	-				+2.9
2,150,091	-				-1.4
2,150,091	-				+0.7
2,150,091	-				+0.6
2,150,091	-				+3.0
2,150,091	-				-1.4
2,150,096	+				-2.8
2,150,134	+				-0.4
2,150,135	-				-0.4
2,150,135	-				+0.6
2,150,138	+				-0.4
2,150,139	-				-0.4
2,150,139	-				-0.1
2,150,139	-				-1.9
2,150,139	-				+0.3
2,150,145	-				-2.7
2,150,168	+				+1.4
2,150,168	+				+0.9
2,150,168	+				+1.4
2,150,169	-				+1.3
2,150,204	+		DZA65_RS10165	0.16	-0.2
2,150,204	+		DZA65_RS10165	0.16	+1.2
2,150,205	-		DZA65_RS10165	0.16	+0.2
2,150,205	-		DZA65_RS10165	0.16	-0.4
2,150,205	-		DZA65_RS10165	0.16	-1.1
2,150,205	-		DZA65_RS10165	0.16	+1.1
2,150,216	+		DZA65_RS10165	0.19	-1.5
2,150,308	-		DZA65_RS10165	0.46	-1.5
2,150,321	+		DZA65_RS10165	0.50	-2.2
2,150,348	+		DZA65_RS10165	0.58	-1.1
2,150,370	+		DZA65_RS10165	0.65	+0.6
2,150,391	+		DZA65_RS10165	0.71	-0.9
2,150,391	+		DZA65_RS10165	0.71	+0.3
2,150,391	+		DZA65_RS10165	0.71	-0.6
2,150,391	+		DZA65_RS10165	0.71	-1.5
2,150,391	+		DZA65_RS10165	0.71	-1.7
2,150,391	+		DZA65_RS10165	0.71	+0.7
2,150,391	+		DZA65_RS10165	0.71	-0.5
2,150,391	+		DZA65_RS10165	0.71	+1.8
2,150,391	+		DZA65_RS10165	0.71	-0.4
2,150,392	-		DZA65_RS10165	0.71	+0.3
2,150,392	-		DZA65_RS10165	0.71	+1.4
2,150,392	-		DZA65_RS10165	0.71	-0.2
2,150,392	-		DZA65_RS10165	0.71	-2.5
2,150,546	+				+0.5
2,150,547	-				-1.9
2,150,547	-				-1.1
2,150,547	-				-0.4
2,150,664	-		DZA65_RS10170	0.64	+0.9
2,150,718	-				+1.6
2,150,780	+				-0.2
2,150,780	+				-1.5
2,150,781	-				+1.2
2,150,799	+				-2.5
2,150,849	-				+0.2
2,150,873	+				+0.6
2,150,873	+				-1.7
2,150,873	+				+1.5
2,150,874	-				+0.6
2,150,881	-				+2.6
2,150,883	-				-1.4
2,151,015	+				+1.4
2,151,015	+				+0.7
2,151,015	+				-2.7
2,151,016	-				-0.1
2,151,016	-				+2.9
2,151,070	+				+0.6
2,151,086	+				-1.9
2,151,086	+				+2.2
2,151,087	-				-1.4
2,151,109	-				-0.5
2,151,144	+		DZA65_RS10175	0.11	-0.9
2,151,230	-		DZA65_RS10175	0.15	-1.4
2,151,488	+		DZA65_RS10175	0.26	-0.4
2,151,488	+		DZA65_RS10175	0.26	-1.7
2,151,488	+		DZA65_RS10175	0.26	+1.4
2,151,488	+		DZA65_RS10175	0.26	-0.4
2,151,488	+		DZA65_RS10175	0.26	-1.7
2,151,489	-		DZA65_RS10175	0.26	+1.1
2,151,591	+		DZA65_RS10175	0.31	-2.8
2,151,591	+		DZA65_RS10175	0.31	+0.8
2,151,662	+		DZA65_RS10175	0.34	+1.1
2,151,662	+		DZA65_RS10175	0.34	+2.0
2,151,662	+		DZA65_RS10175	0.34	-1.5
2,151,663	-		DZA65_RS10175	0.34	-1.2
2,151,663	-		DZA65_RS10175	0.34	+2.3
2,151,709	+		DZA65_RS10175	0.36	-2.9
2,151,710	-		DZA65_RS10175	0.36	-0.9
2,151,761	+		DZA65_RS10175	0.38	-1.5
2,151,780	-		DZA65_RS10175	0.39	-1.4
2,151,821	+		DZA65_RS10175	0.41	+0.6
2,151,821	+		DZA65_RS10175	0.41	+0.4
2,151,821	+		DZA65_RS10175	0.41	-2.2
2,151,919	+		DZA65_RS10175	0.45	+0.6
2,151,989	+		DZA65_RS10175	0.48	-1.7
2,152,004	+		DZA65_RS10175	0.49	-1.1
2,152,004	+		DZA65_RS10175	0.49	+0.6
2,152,004	+		DZA65_RS10175	0.49	-0.4
2,152,005	-		DZA65_RS10175	0.49	-2.7
2,152,005	-		DZA65_RS10175	0.49	-0.2
2,152,005	-		DZA65_RS10175	0.49	-0.4
2,152,101	+		DZA65_RS10175	0.53	-0.1
2,152,101	+		DZA65_RS10175	0.53	+1.0
2,152,101	+		DZA65_RS10175	0.53	-1.9
2,152,101	+		DZA65_RS10175	0.53	-2.2
2,152,258	+		DZA65_RS10175	0.60	-2.2
2,152,259	-		DZA65_RS10175	0.60	+2.4
2,152,259	-		DZA65_RS10175	0.60	+1.3
2,152,316	-		DZA65_RS10175	0.63	-0.1
2,152,453	+		DZA65_RS10175	0.69	+1.4
2,152,453	+		DZA65_RS10175	0.69	-1.4
2,152,454	-		DZA65_RS10175	0.69	+0.1
2,152,454	-		DZA65_RS10175	0.69	+0.6
2,152,454	-		DZA65_RS10175	0.69	+1.1
2,152,454	-		DZA65_RS10175	0.69	-0.0
2,152,454	-		DZA65_RS10175	0.69	+0.2
2,152,454	-		DZA65_RS10175	0.69	+1.4
2,152,510	+		DZA65_RS10175	0.72	-1.9
2,152,511	-		DZA65_RS10175	0.72	+0.1
2,152,511	-		DZA65_RS10175	0.72	+0.2
2,152,511	-		DZA65_RS10175	0.72	-1.9
2,152,515	+		DZA65_RS10175	0.72	+1.4
2,152,515	+		DZA65_RS10175	0.72	+0.2
2,152,515	+		DZA65_RS10175	0.72	+0.8
2,152,516	-		DZA65_RS10175	0.72	+1.0
2,152,516	-		DZA65_RS10175	0.72	-0.7
2,152,516	-		DZA65_RS10175	0.72	+1.0
2,152,529	+		DZA65_RS10175	0.72	-0.0
2,152,529	+		DZA65_RS10175	0.72	+0.4
2,152,592	+		DZA65_RS10175	0.75	+0.6
2,152,592	+		DZA65_RS10175	0.75	-0.7
2,152,592	+		DZA65_RS10175	0.75	+1.3
2,152,621	+		DZA65_RS10175	0.76	+1.6
2,152,621	+		DZA65_RS10175	0.76	+0.3
2,152,622	-		DZA65_RS10175	0.76	-0.0
2,152,622	-		DZA65_RS10175	0.76	+2.9
2,152,622	-		DZA65_RS10175	0.76	-3.3
2,152,622	-		DZA65_RS10175	0.76	-0.9
2,152,622	-		DZA65_RS10175	0.76	-1.2
2,152,622	-		DZA65_RS10175	0.76	-0.0
2,152,622	-		DZA65_RS10175	0.76	-2.2
2,152,658	+		DZA65_RS10175	0.78	+0.5
2,152,658	+		DZA65_RS10175	0.78	-0.1
2,152,658	+		DZA65_RS10175	0.78	+0.2
2,152,658	+		DZA65_RS10175	0.78	-1.4
2,152,658	+		DZA65_RS10175	0.78	-0.4
2,152,658	+		DZA65_RS10175	0.78	-1.2
2,152,658	+		DZA65_RS10175	0.78	-0.9
2,152,658	+		DZA65_RS10175	0.78	+1.4
2,152,658	+		DZA65_RS10175	0.78	+1.1
2,152,659	-		DZA65_RS10175	0.78	-1.4
2,152,659	-		DZA65_RS10175	0.78	+3.0
2,152,659	-		DZA65_RS10175	0.78	-1.4
2,152,659	-		DZA65_RS10175	0.78	-0.8
2,152,659	-		DZA65_RS10175	0.78	-0.4
2,152,659	-		DZA65_RS10175	0.78	+1.2
2,152,659	-		DZA65_RS10175	0.78	+0.1
2,152,659	-				-0.5
2,152,659	-		DZA65_RS10175	0.78	+0.6
2,152,659	-		DZA65_RS10175	0.78	-3.4
2,152,659	-		DZA65_RS10175	0.78	-1.4
2,152,659	-		DZA65_RS10175	0.78	+1.6
2,152,659	-		DZA65_RS10175	0.78	+0.6
2,152,818	+		DZA65_RS10175	0.85	+1.9
2,152,818	+		DZA65_RS10175	0.85	-2.3
2,152,818	+		DZA65_RS10175	0.85	-1.4
2,152,818	+		DZA65_RS10175	0.85	-0.1
2,152,818	+		DZA65_RS10175	0.85	+0.9
2,152,818	+		DZA65_RS10175	0.85	+0.6
2,152,818	+				+1.6
2,152,818	+		DZA65_RS10175	0.85	-1.1
2,152,818	+		DZA65_RS10175	0.85	-0.8
2,152,818	+		DZA65_RS10175	0.85	+2.6
2,152,819	-		DZA65_RS10175	0.85	-0.0
2,152,819	-		DZA65_RS10175	0.85	+1.8
2,152,819	-		DZA65_RS10175	0.85	+0.3
2,152,819	-		DZA65_RS10175	0.85	-0.4
2,152,819	-		DZA65_RS10175	0.85	-0.6
2,152,819	-		DZA65_RS10175	0.85	-0.4
2,152,819	-		DZA65_RS10175	0.85	-1.1
2,152,819	-		DZA65_RS10175	0.85	+1.0
2,152,819	-		DZA65_RS10175	0.85	-1.7
2,152,819	-		DZA65_RS10175	0.85	+3.3
2,153,100	-				-1.4
2,153,100	-				-1.7
2,153,100	-				-1.4
2,153,113	+				+2.0
2,153,113	+				+0.8
2,153,152	+				+1.9
2,153,152	+				-1.7
2,153,152	+				+0.1
2,153,152	+				+1.4
2,153,152	+				+0.3
2,153,152	+				-2.0
2,153,155	+				-0.9
2,153,163	+				+0.8
2,153,163	+				-2.2
2,153,163	+				+0.2