Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10155

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,147,331	+		DZA65_RS10150	0.34	-2.0
2,147,332	-		DZA65_RS10150	0.34	-0.4
2,147,332	-		DZA65_RS10150	0.34	-2.7
2,147,335	-		DZA65_RS10150	0.35	+1.2
2,147,392	+		DZA65_RS10150	0.39	-2.4
2,147,392	+		DZA65_RS10150	0.39	+2.5
2,147,392	+		DZA65_RS10150	0.39	-0.1
2,147,393	-		DZA65_RS10150	0.39	+1.4
2,147,454	+		DZA65_RS10150	0.43	+0.3
2,147,577	+		DZA65_RS10150	0.52	+1.7
2,147,578	-		DZA65_RS10150	0.52	-1.7
2,147,578	-		DZA65_RS10150	0.52	-0.4
2,147,626	+		DZA65_RS10150	0.56	-2.2
2,147,626	+		DZA65_RS10150	0.56	-1.1
2,147,627	-		DZA65_RS10150	0.56	+0.6
2,147,627	-		DZA65_RS10150	0.56	+0.3
2,147,641	+		DZA65_RS10150	0.57	+2.0
2,147,641	+		DZA65_RS10150	0.57	+1.8
2,147,641	+		DZA65_RS10150	0.57	+0.6
2,147,642	-		DZA65_RS10150	0.57	-3.5
2,147,642	-		DZA65_RS10150	0.57	+2.0
2,147,642	-		DZA65_RS10150	0.57	-2.4
2,147,653	-		DZA65_RS10150	0.58	-3.2
2,147,653	-		DZA65_RS10150	0.58	-0.4
2,147,701	+		DZA65_RS10150	0.61	-0.4
2,147,701	+		DZA65_RS10150	0.61	+0.9
2,147,701	+		DZA65_RS10150	0.61	-1.0
2,147,702	-		DZA65_RS10150	0.61	-0.4
2,147,702	-		DZA65_RS10150	0.61	+3.4
2,147,702	-		DZA65_RS10150	0.61	-1.0
2,147,702	-		DZA65_RS10150	0.61	+1.8
2,147,702	-		DZA65_RS10150	0.61	-1.4
2,147,803	+		DZA65_RS10150	0.69	-1.4
2,147,803	+		DZA65_RS10150	0.69	+0.3
2,147,803	+		DZA65_RS10150	0.69	-0.2
2,147,803	+		DZA65_RS10150	0.69	-0.1
2,147,807	+		DZA65_RS10150	0.69	-0.8
2,147,807	+		DZA65_RS10150	0.69	+0.4
2,147,807	+		DZA65_RS10150	0.69	+0.2
2,147,807	+		DZA65_RS10150	0.69	+0.6
2,147,808	-		DZA65_RS10150	0.69	-1.7
2,147,808	-		DZA65_RS10150	0.69	-1.5
2,147,848	+		DZA65_RS10150	0.72	+1.0
2,147,849	-		DZA65_RS10150	0.72	+0.9
2,147,852	+		DZA65_RS10150	0.72	-0.8
2,147,852	+		DZA65_RS10150	0.72	-1.0
2,147,852	+		DZA65_RS10150	0.72	+0.6
2,147,852	+		DZA65_RS10150	0.72	+1.6
2,147,852	+		DZA65_RS10150	0.72	+0.5
2,147,852	+		DZA65_RS10150	0.72	-1.2
2,147,852	+		DZA65_RS10150	0.72	-2.7
2,147,852	+		DZA65_RS10150	0.72	-2.0
2,147,852	+		DZA65_RS10150	0.72	+1.4
2,147,852	+		DZA65_RS10150	0.72	+1.4
2,147,853	-		DZA65_RS10150	0.73	+0.3
2,147,853	-		DZA65_RS10150	0.73	-0.4
2,147,853	-		DZA65_RS10150	0.73	+2.9
2,147,853	-		DZA65_RS10150	0.73	+0.2
2,147,853	-		DZA65_RS10150	0.73	-1.4
2,147,853	-				-2.0
2,147,853	-				-0.1
2,147,853	-		DZA65_RS10150	0.73	-1.2
2,147,918	+		DZA65_RS10150	0.77	-1.7
2,147,918	+		DZA65_RS10150	0.77	-2.5
2,147,918	+		DZA65_RS10150	0.77	-1.7
2,147,952	+		DZA65_RS10150	0.80	-1.8
2,147,952	+		DZA65_RS10150	0.80	+0.2
2,148,010	+		DZA65_RS10150	0.84	-1.0
2,148,010	+		DZA65_RS10150	0.84	-1.0
2,148,010	+		DZA65_RS10150	0.84	-0.6
2,148,010	+		DZA65_RS10150	0.84	-1.0
2,148,011	-		DZA65_RS10150	0.84	-1.0
2,148,011	-		DZA65_RS10150	0.84	-2.0
2,148,011	-		DZA65_RS10150	0.84	-0.7
2,148,011	-		DZA65_RS10150	0.84	-2.4
2,148,011	-		DZA65_RS10150	0.84	-0.2
2,148,011	-		DZA65_RS10150	0.84	-2.1
2,148,011	-		DZA65_RS10150	0.84	-1.0
2,148,011	-		DZA65_RS10150	0.84	+3.6
2,148,011	-		DZA65_RS10150	0.84	+0.1
2,148,011	-		DZA65_RS10150	0.84	-1.4
2,148,011	-		DZA65_RS10150	0.84	-0.1
2,148,031	-		DZA65_RS10150	0.86	+2.2
2,148,055	+		DZA65_RS10150	0.87	-1.7
2,148,056	-		DZA65_RS10150	0.87	+1.2
2,148,056	-		DZA65_RS10150	0.87	-0.4
2,148,117	+				+0.8
2,148,163	+				-1.7
2,148,164	-				-0.4
2,148,226	+				-0.4
2,148,226	+				+0.0
2,148,226	+				-1.2
2,148,227	-				-1.0
2,148,227	-				-2.2
2,148,395	+				-0.4
2,148,419	+				-0.5
2,148,419	+				-2.8
2,148,419	+				-2.7
2,148,420	-				-1.0
2,148,420	-				-0.6
2,148,529	+		DZA65_RS10155	0.15	-0.4
2,148,529	+		DZA65_RS10155	0.15	-0.4
2,148,529	+		DZA65_RS10155	0.15	-1.0
2,148,530	-		DZA65_RS10155	0.15	+0.8
2,148,530	-		DZA65_RS10155	0.15	+0.6
2,148,530	-		DZA65_RS10155	0.15	-1.0
2,148,530	-		DZA65_RS10155	0.15	-2.8
2,148,594	+		DZA65_RS10155	0.19	-0.2
2,148,644	+		DZA65_RS10155	0.23	+0.8
2,148,644	+		DZA65_RS10155	0.23	-0.8
2,148,644	+		DZA65_RS10155	0.23	+0.6
2,148,644	+		DZA65_RS10155	0.23	-1.7
2,148,644	+		DZA65_RS10155	0.23	+0.6
2,148,644	+		DZA65_RS10155	0.23	-2.5
2,148,645	-		DZA65_RS10155	0.23	+0.6
2,148,645	-		DZA65_RS10155	0.23	+0.1
2,148,645	-		DZA65_RS10155	0.23	-0.7
2,148,645	-		DZA65_RS10155	0.23	+0.3
2,148,802	+		DZA65_RS10155	0.34	+0.6
2,148,834	+		DZA65_RS10155	0.36	-0.5
2,148,841	-		DZA65_RS10155	0.37	-2.4
2,148,855	+		DZA65_RS10155	0.38	-1.5
2,148,899	+		DZA65_RS10155	0.41	-1.0
2,148,900	-		DZA65_RS10155	0.41	-1.7
2,149,009	+		DZA65_RS10155	0.48	+0.9
2,149,010	-		DZA65_RS10155	0.48	-1.0
2,149,013	-		DZA65_RS10155	0.49	+1.3
2,149,013	-		DZA65_RS10155	0.49	-2.4
2,149,023	+		DZA65_RS10155	0.49	-1.7
2,149,023	+		DZA65_RS10155	0.49	-1.4
2,149,023	+		DZA65_RS10155	0.49	-1.7
2,149,023	+		DZA65_RS10155	0.49	-1.7
2,149,024	-		DZA65_RS10155	0.49	-1.0
2,149,027	-		DZA65_RS10155	0.50	-2.2
2,149,058	+		DZA65_RS10155	0.52	-0.4
2,149,058	+		DZA65_RS10155	0.52	+1.1
2,149,058	+		DZA65_RS10155	0.52	-0.1
2,149,058	+		DZA65_RS10155	0.52	-1.4
2,149,058	+		DZA65_RS10155	0.52	-1.4
2,149,058	+		DZA65_RS10155	0.52	+1.4
2,149,059	-		DZA65_RS10155	0.52	-0.4
2,149,059	-		DZA65_RS10155	0.52	-0.4
2,149,059	-		DZA65_RS10155	0.52	+1.2
2,149,059	-		DZA65_RS10155	0.52	+2.7
2,149,059	-		DZA65_RS10155	0.52	-1.7
2,149,059	-		DZA65_RS10155	0.52	-1.1
2,149,059	-		DZA65_RS10155	0.52	+3.3
2,149,081	+		DZA65_RS10155	0.53	-0.4
2,149,081	+		DZA65_RS10155	0.53	+0.6
2,149,082	-		DZA65_RS10155	0.54	+0.6
2,149,083	+		DZA65_RS10155	0.54	-2.8
2,149,084	-		DZA65_RS10155	0.54	-1.2
2,149,124	+		DZA65_RS10155	0.56	-1.4
2,149,125	-		DZA65_RS10155	0.57	-1.2
2,149,130	+		DZA65_RS10155	0.57	-0.7
2,149,130	+		DZA65_RS10155	0.57	+2.6
2,149,130	+		DZA65_RS10155	0.57	+1.4
2,149,158	+		DZA65_RS10155	0.59	+0.5
2,149,159	-		DZA65_RS10155	0.59	+1.6
2,149,159	-		DZA65_RS10155	0.59	-2.5
2,149,187	+		DZA65_RS10155	0.61	+1.7
2,149,187	+		DZA65_RS10155	0.61	+2.4
2,149,187	+		DZA65_RS10155	0.61	-0.4
2,149,187	+		DZA65_RS10155	0.61	-0.2
2,149,187	+		DZA65_RS10155	0.61	-0.4
2,149,188	-		DZA65_RS10155	0.61	-0.4
2,149,188	-		DZA65_RS10155	0.61	-1.2
2,149,188	-		DZA65_RS10155	0.61	-0.4
2,149,188	-		DZA65_RS10155	0.61	-0.1
2,149,316	+		DZA65_RS10155	0.70	-0.2
2,149,316	+		DZA65_RS10155	0.70	+1.9
2,149,317	-		DZA65_RS10155	0.70	-1.4
2,149,339	+		DZA65_RS10155	0.71	+0.6
2,149,339	+		DZA65_RS10155	0.71	+1.6
2,149,339	+		DZA65_RS10155	0.71	-1.0
2,149,371	+		DZA65_RS10155	0.74	-3.3
2,149,371	+		DZA65_RS10155	0.74	-1.1
2,149,371	+		DZA65_RS10155	0.74	-0.7
2,149,371	+		DZA65_RS10155	0.74	+0.6
2,149,372	-		DZA65_RS10155	0.74	+2.1
2,149,372	-		DZA65_RS10155	0.74	-1.7
2,149,372	-		DZA65_RS10155	0.74	-1.4
2,149,372	-		DZA65_RS10155	0.74	+1.4
2,149,372	-		DZA65_RS10155	0.74	-2.5
2,149,372	-		DZA65_RS10155	0.74	+1.7
2,149,372	-		DZA65_RS10155	0.74	-1.7
2,149,372	-		DZA65_RS10155	0.74	+0.2
2,149,372	-		DZA65_RS10155	0.74	-0.7
2,149,372	-		DZA65_RS10155	0.74	-2.0
2,149,372	-		DZA65_RS10155	0.74	-2.7
2,149,372	-		DZA65_RS10155	0.74	-1.4
2,149,373	+		DZA65_RS10155	0.74	-1.0
2,149,373	+		DZA65_RS10155	0.74	-0.7
2,149,374	-		DZA65_RS10155	0.74	-2.0
2,149,374	-		DZA65_RS10155	0.74	-1.4
2,149,374	-		DZA65_RS10155	0.74	+1.8
2,149,374	-		DZA65_RS10155	0.74	+0.6
2,149,374	-		DZA65_RS10155	0.74	-0.4
2,149,379	+		DZA65_RS10155	0.74	-0.4
2,149,380	-		DZA65_RS10155	0.74	+1.6
2,149,380	-		DZA65_RS10155	0.74	-0.4
2,149,380	-		DZA65_RS10155	0.74	-0.4
2,149,388	+		DZA65_RS10155	0.75	-0.7
2,149,388	+		DZA65_RS10155	0.75	-1.0
2,149,388	+		DZA65_RS10155	0.75	+1.0
2,149,446	-		DZA65_RS10155	0.79	+1.5
2,149,446	-		DZA65_RS10155	0.79	+0.2
2,149,446	-		DZA65_RS10155	0.79	+1.2
2,149,513	+		DZA65_RS10155	0.84	-2.2
2,149,514	-		DZA65_RS10155	0.84	+1.2
2,149,581	-		DZA65_RS10155	0.88	-1.5
2,149,601	+		DZA65_RS10155	0.90	-0.1
2,149,703	+				-0.9
2,149,737	+				-0.4
2,149,738	-				-1.4
2,149,839	+		DZA65_RS10160	0.55	-1.9
2,149,840	-		DZA65_RS10160	0.55	+1.6
2,149,840	-		DZA65_RS10160	0.55	+0.6
2,149,929	-				-1.9
2,149,929	-				-0.0
2,150,025	+				-1.2
2,150,025	+				-0.4
2,150,025	+				+0.1
2,150,026	-				+0.6
2,150,026	-				+2.3
2,150,026	-				-1.4
2,150,026	-				-1.4
2,150,026	-				-0.7
2,150,027	+				+1.9
2,150,027	+				-0.1
2,150,027	+				-1.4
2,150,028	-				-2.4
2,150,028	-				-0.6
2,150,028	-				-1.2
2,150,028	-				+0.6
2,150,028	-				-0.1
2,150,077	-				+0.5
2,150,090	+				-1.9
2,150,090	+				+0.6
2,150,090	+				+1.3
2,150,090	+				+2.2
2,150,090	+				+0.6
2,150,091	-				+0.4
2,150,091	-				-0.0
2,150,091	-				-1.9
2,150,091	-				+2.9
2,150,091	-				-1.4
2,150,091	-				+0.7
2,150,091	-				+0.6
2,150,091	-				+3.0
2,150,091	-				-1.4
2,150,096	+				-2.8
2,150,134	+				-0.4
2,150,135	-				-0.4
2,150,135	-				+0.6
2,150,138	+				-0.4
2,150,139	-				-0.4
2,150,139	-				-0.1
2,150,139	-				-1.9
2,150,139	-				+0.3
2,150,145	-				-2.7
2,150,168	+				+1.4
2,150,168	+				+0.9
2,150,168	+				+1.4
2,150,169	-				+1.3
2,150,204	+		DZA65_RS10165	0.16	-0.2
2,150,204	+		DZA65_RS10165	0.16	+1.2
2,150,205	-		DZA65_RS10165	0.16	+0.2
2,150,205	-		DZA65_RS10165	0.16	-0.4
2,150,205	-		DZA65_RS10165	0.16	-1.1
2,150,205	-		DZA65_RS10165	0.16	+1.1
2,150,216	+		DZA65_RS10165	0.19	-1.5
2,150,308	-		DZA65_RS10165	0.46	-1.5
2,150,321	+		DZA65_RS10165	0.50	-2.2
2,150,348	+		DZA65_RS10165	0.58	-1.1
2,150,370	+		DZA65_RS10165	0.65	+0.6
2,150,391	+		DZA65_RS10165	0.71	-0.9
2,150,391	+		DZA65_RS10165	0.71	+0.3
2,150,391	+		DZA65_RS10165	0.71	-0.6
2,150,391	+		DZA65_RS10165	0.71	-1.5
2,150,391	+		DZA65_RS10165	0.71	-1.7
2,150,391	+		DZA65_RS10165	0.71	+0.7
2,150,391	+		DZA65_RS10165	0.71	-0.5
2,150,391	+		DZA65_RS10165	0.71	+1.8
2,150,391	+		DZA65_RS10165	0.71	-0.4
2,150,392	-		DZA65_RS10165	0.71	+0.3
2,150,392	-		DZA65_RS10165	0.71	+1.4
2,150,392	-		DZA65_RS10165	0.71	-0.2
2,150,392	-		DZA65_RS10165	0.71	-2.5
2,150,546	+				+0.5
2,150,547	-				-1.9
2,150,547	-				-1.1
2,150,547	-				-0.4
2,150,664	-		DZA65_RS10170	0.64	+0.9
2,150,718	-				+1.6