Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09780

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,061,320	+				+0.1
2,061,320	+				-0.1
2,061,320	+				-1.7
2,061,321	-				-0.7
2,061,321	-				+2.2
2,061,321	-				+2.4
2,061,339	+				+1.5
2,061,339	+				-1.7
2,061,339	+				+0.3
2,061,340	-				+2.4
2,061,340	-				-0.5
2,061,340	-				-0.1
2,061,351	-				-0.9
2,061,358	+				-0.1
2,061,358	+				-0.9
2,061,358	+				+0.7
2,061,359	-				-0.3
2,061,359	-				-0.0
2,061,359	-				+0.8
2,061,379	+				-1.7
2,061,379	+				-1.9
2,061,379	+				+1.2
2,061,379	+				+2.0
2,061,383	+				-1.7
2,061,383	+				+1.5
2,061,383	+				+1.4
2,061,383	+				-2.3
2,061,383	+				+0.9
2,061,383	+				+0.5
2,061,383	+				-0.3
2,061,384	-				+2.3
2,061,384	-				-1.7
2,061,384	-				-0.7
2,061,384	-				+0.4
2,061,384	-				+0.7
2,061,384	-				-0.1
2,061,384	-				-0.3
2,061,384	-				-0.3
2,061,384	-				+0.7
2,061,384	-				+2.7
2,061,384	-				-0.3
2,061,384	-				+1.5
2,061,384	-				-0.3
2,061,384	-				+1.4
2,061,385	+				-0.1
2,061,385	+				+0.4
2,061,385	+				-2.3
2,061,385	+				+1.1
2,061,385	+				+1.9
2,061,386	-				-1.3
2,061,386	-				+1.7
2,061,386	-				+2.2
2,061,390	+				-3.1
2,061,430	+				-1.7
2,061,430	+				+0.2
2,061,430	+				-1.3
2,061,430	+				+1.0
2,061,431	-				-0.8
2,061,431	-				+1.1
2,061,431	-				+0.7
2,061,431	-				+0.5
2,061,431	-				+0.2
2,061,431	-				-2.0
2,061,432	+				-0.5
2,061,432	+				-0.8
2,061,432	+				-1.3
2,061,432	+				-0.0
2,061,432	+				-1.7
2,061,432	+				+0.9
2,061,432	+				+0.1
2,061,432	+				+0.3
2,061,432	+				-1.9
2,061,432	+				-1.7
2,061,432	+				+1.5
2,061,432	+				-2.9
2,061,432	+				-0.3
2,061,433	-				+0.6
2,061,433	-				-1.3
2,061,433	-				+0.2
2,061,433	-				-0.9
2,061,433	-				+0.7
2,061,433	-				-2.3
2,061,433	-				+1.0
2,061,433	-				-1.7
2,061,444	-				-0.4
2,061,462	-				+3.4
2,061,462	-				+0.3
2,061,500	-				+0.9
2,061,576	+				-0.9
2,061,576	+				-1.3
2,061,577	-				-2.2
2,061,606	+				-0.8
2,061,606	+				-1.7
2,061,607	-				-1.3
2,061,607	-				-0.2
2,061,635	-				-2.5
2,061,852	-		DZA65_RS09775	0.37	+0.7
2,061,852	-		DZA65_RS09775	0.37	+1.7
2,061,990	+		DZA65_RS09775	0.56	+0.7
2,061,999	+		DZA65_RS09775	0.57	-0.6
2,062,000	-		DZA65_RS09775	0.58	+3.8
2,062,146	+		DZA65_RS09775	0.78	-0.6
2,062,157	+		DZA65_RS09775	0.79	+0.7
2,062,158	-		DZA65_RS09775	0.79	-1.3
2,062,169	-		DZA65_RS09775	0.81	-1.3
2,062,178	+		DZA65_RS09775	0.82	+0.9
2,062,178	+		DZA65_RS09775	0.82	-1.2
2,062,178	+		DZA65_RS09775	0.82	-1.3
2,062,178	+		DZA65_RS09775	0.82	-1.3
2,062,178	+		DZA65_RS09775	0.82	-0.4
2,062,178	+		DZA65_RS09775	0.82	-2.1
2,062,179	-		DZA65_RS09775	0.82	+0.5
2,062,179	-		DZA65_RS09775	0.82	-1.3
2,062,179	-		DZA65_RS09775	0.82	+0.4
2,062,179	-		DZA65_RS09775	0.82	-2.1
2,062,179	-		DZA65_RS09775	0.82	+1.1
2,062,179	-		DZA65_RS09775	0.82	-0.8
2,062,179	-		DZA65_RS09775	0.82	-1.9
2,062,179	-		DZA65_RS09775	0.82	-2.1
2,062,182	-		DZA65_RS09775	0.83	+0.8
2,062,182	-		DZA65_RS09775	0.83	+0.1
2,062,182	-				-0.9
2,062,274	+				+0.3
2,062,355	+				+0.7
2,062,356	-				-2.3
2,062,430	+		DZA65_RS09780	0.12	-0.3
2,062,430	+		DZA65_RS09780	0.12	-2.0
2,062,430	+		DZA65_RS09780	0.12	+1.1
2,062,430	+		DZA65_RS09780	0.12	+3.7
2,062,430	+		DZA65_RS09780	0.12	-0.9
2,062,431	-		DZA65_RS09780	0.12	-1.1
2,062,431	-		DZA65_RS09780	0.12	+0.9
2,062,431	-		DZA65_RS09780	0.12	-1.3
2,062,441	+		DZA65_RS09780	0.14	-1.8
2,062,441	+		DZA65_RS09780	0.14	-1.9
2,062,442	-		DZA65_RS09780	0.14	+2.1
2,062,442	-		DZA65_RS09780	0.14	-2.5
2,062,442	-		DZA65_RS09780	0.14	+1.2
2,062,490	+		DZA65_RS09780	0.19	+0.1
2,062,491	-		DZA65_RS09780	0.19	-1.3
2,062,491	-		DZA65_RS09780	0.19	+0.7
2,062,533	-		DZA65_RS09780	0.24	+0.7
2,062,533	-		DZA65_RS09780	0.24	-0.9
2,062,533	-		DZA65_RS09780	0.24	-1.3
2,062,828	+		DZA65_RS09780	0.56	-0.3
2,062,838	-		DZA65_RS09780	0.57	+0.9
2,062,853	+		DZA65_RS09780	0.59	+0.6
2,062,853	+		DZA65_RS09780	0.59	+0.8
2,062,853	+		DZA65_RS09780	0.59	+0.3
2,062,853	+		DZA65_RS09780	0.59	+0.2
2,062,853	+		DZA65_RS09780	0.59	+3.1
2,062,854	-		DZA65_RS09780	0.59	-0.9
2,062,854	-		DZA65_RS09780	0.59	-1.3
2,062,854	-		DZA65_RS09780	0.59	+0.0
2,062,873	+		DZA65_RS09780	0.61	-0.2
2,062,954	+		DZA65_RS09780	0.70	+0.1
2,062,954	+		DZA65_RS09780	0.70	-3.2
2,062,955	-		DZA65_RS09780	0.70	-1.1
2,063,062	+		DZA65_RS09780	0.82	+1.7
2,063,062	+		DZA65_RS09780	0.82	-1.7
2,063,062	+		DZA65_RS09780	0.82	+0.4
2,063,062	+		DZA65_RS09780	0.82	+1.7
2,063,062	+				-0.9
2,063,063	-		DZA65_RS09780	0.82	-0.3
2,063,063	-		DZA65_RS09780	0.82	+0.7
2,063,064	+		DZA65_RS09780	0.83	+1.9
2,063,064	+		DZA65_RS09780	0.83	-0.6
2,063,064	+		DZA65_RS09780	0.83	+0.7
2,063,064	+		DZA65_RS09780	0.83	+3.4
2,063,065	-		DZA65_RS09780	0.83	-1.9
2,063,065	-		DZA65_RS09780	0.83	-1.3
2,063,065	-		DZA65_RS09780	0.83	-2.1
2,063,065	-		DZA65_RS09780	0.83	+0.2
2,063,065	-		DZA65_RS09780	0.83	+0.7
2,063,065	-		DZA65_RS09780	0.83	-2.7
2,063,065	-		DZA65_RS09780	0.83	-2.3
2,063,065	-		DZA65_RS09780	0.83	-0.9
2,063,065	-		DZA65_RS09780	0.83	-0.1
2,063,065	-		DZA65_RS09780	0.83	-1.0
2,063,065	-		DZA65_RS09780	0.83	-0.8
2,063,065	-		DZA65_RS09780	0.83	-2.3
2,063,065	-		DZA65_RS09780	0.83	+1.2
2,063,145	+				-0.1
2,063,145	+				+0.5
2,063,145	+				-1.3
2,063,146	-				+1.4
2,063,149	+				-1.7
2,063,149	+				-2.8
2,063,149	+				-1.7
2,063,150	-				+2.1
2,063,150	-				-3.1
2,063,150	-				+1.2
2,063,150	-				-0.9
2,063,150	-				+1.7
2,063,150	-				+4.3
2,063,171	+				+1.4
2,063,171	+				+1.7
2,063,171	+				+0.7
2,063,172	-				+1.9
2,063,297	+				-1.3
2,063,320	-				+1.2
2,063,320	-				-2.5
2,063,320	-				-1.1
2,063,320	-				-0.1
2,063,335	-				-0.3
2,063,348	+				+0.1
2,063,349	-				-0.3
2,063,349	-				-1.9
2,063,349	-				+0.3
2,063,349	-				+0.4
2,063,429	+		DZA65_RS09785	0.14	-2.3
2,063,429	+		DZA65_RS09785	0.14	+0.2
2,063,430	-		DZA65_RS09785	0.14	+1.1
2,063,500	+		DZA65_RS09785	0.29	-0.9
2,063,500	+		DZA65_RS09785	0.29	-1.5
2,063,500	+		DZA65_RS09785	0.29	+3.0
2,063,500	+		DZA65_RS09785	0.29	-1.1
2,063,501	-		DZA65_RS09785	0.29	+2.4
2,063,505	+		DZA65_RS09785	0.30	+0.1
2,063,506	-		DZA65_RS09785	0.30	-0.7
2,063,506	-		DZA65_RS09785	0.30	-0.8
2,063,746	+		DZA65_RS09785	0.80	+1.4
2,063,747	-		DZA65_RS09785	0.80	+0.0
2,063,773	+		DZA65_RS09785	0.85	+0.7
2,063,773	+		DZA65_RS09785	0.85	+3.4
2,063,774	-		DZA65_RS09785	0.86	-0.3
2,063,821	+				+1.7
2,063,821	+				+1.4
2,063,822	-				-1.3
2,063,822	-				+2.1
2,063,937	-				+0.3
2,063,942	+				+0.5
2,063,943	-				+1.1
2,063,943	-				+0.8
2,063,943	-				-1.1
2,063,965	-				+3.0
2,063,969	-				-0.0
2,063,979	+				+1.4
2,063,983	+				+0.8
2,064,027	+				-0.9
2,064,046	+				-0.9
2,064,047	-				+2.0
2,064,047	-				+0.5
2,064,055	-				-1.3
2,064,055	-				+0.4
2,064,065	+				+0.1
2,064,066	-				+0.3
2,064,067	+				+0.5
2,064,067	+				-1.3
2,064,068	-				-0.1
2,064,162	-				-2.1
2,064,162	-				-0.3
2,064,179	+				-2.0
2,064,180	-				-1.9
2,064,180	-				-0.9
2,064,181	+				-2.5
2,064,181	+				+1.5
2,064,182	-				-0.3
2,064,182	-				+0.7
2,064,182	-				-2.1
2,064,192	+				+0.2
2,064,193	-				-0.7
2,064,193	-				-0.3
2,064,193	-				+1.0
2,064,193	-				-0.3
2,064,194	+				-1.9
2,064,194	+				+2.7
2,064,194	+				-1.7
2,064,194	+				-0.7
2,064,195	-				-2.8
2,064,195	-				+1.2
2,064,195	-				+1.2
2,064,195	-				-0.3
2,064,195	-				-1.7
2,064,195	-				-0.3
2,064,198	+				-2.7
2,064,198	+				-0.8
2,064,198	+				+0.7
2,064,199	-				+1.7
2,064,199	-				+2.0
2,064,208	+				+1.7
2,064,208	+				+0.0
2,064,209	-				-0.9