Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09580

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,013,562	+		DZA65_RS09575	0.51	+1.5
2,013,564	+		DZA65_RS09575	0.51	-2.5
2,013,564	+		DZA65_RS09575	0.51	+0.9
2,013,565	-		DZA65_RS09575	0.51	+0.1
2,013,682	+		DZA65_RS09575	0.58	+0.7
2,013,753	+		DZA65_RS09575	0.62	-1.3
2,013,778	-		DZA65_RS09575	0.64	-0.6
2,013,785	+		DZA65_RS09575	0.64	+3.3
2,013,785	+		DZA65_RS09575	0.64	+2.5
2,013,786	-		DZA65_RS09575	0.64	+2.0
2,013,786	-		DZA65_RS09575	0.64	+2.2
2,013,786	-		DZA65_RS09575	0.64	+2.1
2,013,796	+		DZA65_RS09575	0.65	+1.0
2,013,796	+		DZA65_RS09575	0.65	-1.8
2,013,796	+		DZA65_RS09575	0.65	-1.3
2,013,796	+		DZA65_RS09575	0.65	+0.7
2,013,796	+		DZA65_RS09575	0.65	-0.3
2,013,796	+		DZA65_RS09575	0.65	+1.3
2,013,796	+		DZA65_RS09575	0.65	-0.1
2,013,796	+		DZA65_RS09575	0.65	-3.0
2,013,796	+		DZA65_RS09575	0.65	-1.0
2,013,796	+		DZA65_RS09575	0.65	-0.9
2,013,796	+		DZA65_RS09575	0.65	+2.1
2,013,796	+		DZA65_RS09575	0.65	+0.5
2,013,796	+		DZA65_RS09575	0.65	-0.9
2,013,796	+		DZA65_RS09575	0.65	-0.5
2,013,797	-		DZA65_RS09575	0.65	+0.1
2,013,797	-		DZA65_RS09575	0.65	+2.2
2,013,797	-		DZA65_RS09575	0.65	-0.6
2,013,797	-		DZA65_RS09575	0.65	+1.6
2,013,797	-		DZA65_RS09575	0.65	+2.1
2,013,797	-		DZA65_RS09575	0.65	+2.4
2,013,797	-		DZA65_RS09575	0.65	-0.4
2,013,797	-		DZA65_RS09575	0.65	-0.9
2,013,797	-		DZA65_RS09575	0.65	+0.2
2,013,797	-		DZA65_RS09575	0.65	-0.3
2,013,797	-		DZA65_RS09575	0.65	-0.3
2,013,797	-		DZA65_RS09575	0.65	-0.9
2,013,807	+		DZA65_RS09575	0.66	+0.5
2,013,855	+		DZA65_RS09575	0.68	+1.1
2,013,855	+		DZA65_RS09575	0.68	-0.1
2,013,855	+		DZA65_RS09575	0.68	+0.3
2,013,855	+		DZA65_RS09575	0.68	+0.4
2,013,856	-		DZA65_RS09575	0.69	-0.9
2,013,909	+		DZA65_RS09575	0.72	-0.9
2,013,910	-		DZA65_RS09575	0.72	-1.7
2,013,943	+		DZA65_RS09575	0.74	+2.1
2,013,943	+		DZA65_RS09575	0.74	+2.7
2,013,943	+		DZA65_RS09575	0.74	+1.4
2,013,943	+		DZA65_RS09575	0.74	+0.7
2,013,943	+		DZA65_RS09575	0.74	+2.7
2,013,944	-		DZA65_RS09575	0.74	-2.1
2,013,944	-		DZA65_RS09575	0.74	-1.9
2,013,944	-		DZA65_RS09575	0.74	+0.2
2,013,944	-		DZA65_RS09575	0.74	-3.4
2,013,954	+		DZA65_RS09575	0.74	-0.1
2,013,955	-		DZA65_RS09575	0.74	-0.9
2,013,957	+		DZA65_RS09575	0.74	-2.8
2,013,957	+		DZA65_RS09575	0.74	+0.3
2,013,957	+		DZA65_RS09575	0.74	-1.1
2,013,957	+		DZA65_RS09575	0.74	+0.2
2,013,957	+		DZA65_RS09575	0.74	-1.3
2,013,958	-		DZA65_RS09575	0.75	-1.3
2,013,958	-		DZA65_RS09575	0.75	+1.0
2,013,958	-		DZA65_RS09575	0.75	-0.7
2,013,958	-		DZA65_RS09575	0.75	+2.0
2,013,958	-		DZA65_RS09575	0.75	+0.1
2,013,979	+		DZA65_RS09575	0.76	+1.5
2,013,979	+		DZA65_RS09575	0.76	+0.7
2,013,979	+		DZA65_RS09575	0.76	+1.8
2,013,980	-		DZA65_RS09575	0.76	-1.9
2,013,980	-		DZA65_RS09575	0.76	+1.2
2,014,047	+		DZA65_RS09575	0.80	-2.5
2,014,179	+		DZA65_RS09575	0.88	-0.9
2,014,179	+		DZA65_RS09575	0.88	-2.3
2,014,179	+		DZA65_RS09575	0.88	-2.2
2,014,179	+		DZA65_RS09575	0.88	-3.5
2,014,179	+		DZA65_RS09575	0.88	+0.3
2,014,179	+		DZA65_RS09575	0.88	-2.3
2,014,179	+		DZA65_RS09575	0.88	+0.9
2,014,180	-		DZA65_RS09575	0.88	+1.8
2,014,180	-		DZA65_RS09575	0.88	-2.5
2,014,180	-		DZA65_RS09575	0.88	-0.9
2,014,180	-		DZA65_RS09575	0.88	+1.1
2,014,180	-		DZA65_RS09575	0.88	-0.9
2,014,213	-		DZA65_RS09575	0.90	+1.4
2,014,298	-				+0.9
2,014,342	+				+0.7
2,014,342	+				-0.3
2,014,343	-				-0.5
2,014,343	-				+0.7
2,014,343	-				+1.1
2,014,393	+				-0.7
2,014,456	+				-0.2
2,014,456	+				+0.1
2,014,475	+				+0.9
2,014,476	-				-1.9
2,014,476	-				-1.9
2,014,566	-		DZA65_RS09580	0.13	+0.0
2,014,589	+		DZA65_RS09580	0.15	-2.5
2,014,589	+		DZA65_RS09580	0.15	+0.1
2,014,590	-		DZA65_RS09580	0.15	+1.1
2,014,592	+		DZA65_RS09580	0.16	-1.8
2,014,592	+		DZA65_RS09580	0.16	+0.1
2,014,593	-		DZA65_RS09580	0.16	-0.7
2,014,593	-		DZA65_RS09580	0.16	+0.7
2,014,593	-		DZA65_RS09580	0.16	-1.3
2,014,594	+		DZA65_RS09580	0.16	-1.7
2,014,594	+		DZA65_RS09580	0.16	-2.7
2,014,594	+		DZA65_RS09580	0.16	-1.3
2,014,594	+		DZA65_RS09580	0.16	-2.3
2,014,594	+		DZA65_RS09580	0.16	-0.6
2,014,594	+		DZA65_RS09580	0.16	-0.2
2,014,594	+		DZA65_RS09580	0.16	-0.9
2,014,594	+		DZA65_RS09580	0.16	-3.0
2,014,594	+		DZA65_RS09580	0.16	-0.3
2,014,594	+		DZA65_RS09580	0.16	-1.9
2,014,594	+		DZA65_RS09580	0.16	-0.3
2,014,594	+		DZA65_RS09580	0.16	+1.7
2,014,594	+		DZA65_RS09580	0.16	-1.3
2,014,595	-		DZA65_RS09580	0.16	-1.3
2,014,595	-		DZA65_RS09580	0.16	+0.6
2,014,595	-		DZA65_RS09580	0.16	+1.2
2,014,595	-		DZA65_RS09580	0.16	-0.1
2,014,595	-		DZA65_RS09580	0.16	+5.8
2,014,595	-		DZA65_RS09580	0.16	-1.5
2,014,595	-		DZA65_RS09580	0.16	-3.2
2,014,595	-		DZA65_RS09580	0.16	-0.5
2,014,595	-		DZA65_RS09580	0.16	-0.3
2,014,595	-		DZA65_RS09580	0.16	-1.7
2,014,595	-		DZA65_RS09580	0.16	+1.4
2,014,595	-		DZA65_RS09580	0.16	+2.1
2,014,595	-		DZA65_RS09580	0.16	-2.5
2,014,595	-		DZA65_RS09580	0.16	+0.9
2,014,603	-		DZA65_RS09580	0.17	-0.6
2,014,943	+		DZA65_RS09580	0.56	-0.3
2,015,080	-		DZA65_RS09580	0.71	-1.3
2,015,080	-		DZA65_RS09580	0.71	-0.9
2,015,116	+		DZA65_RS09580	0.75	-0.3
2,015,117	-		DZA65_RS09580	0.76	-0.3
2,015,117	-		DZA65_RS09580	0.76	+1.3
2,015,117	-		DZA65_RS09580	0.76	+0.3
2,015,117	-		DZA65_RS09580	0.76	-0.8
2,015,117	-		DZA65_RS09580	0.76	-1.3
2,015,117	-		DZA65_RS09580	0.76	-3.1
2,015,155	+		DZA65_RS09580	0.80	-0.9
2,015,155	+				+2.1
2,015,235	-		DZA65_RS09580	0.89	-2.3
2,015,323	+				+1.5
2,015,323	+				-1.3
2,015,323	+				+0.4
2,015,323	+				-1.9
2,015,323	+				-0.9
2,015,323	+				+0.4
2,015,324	-				-0.3
2,015,324	-				-0.3
2,015,324	-				-2.5
2,015,324	-				-2.8
2,015,324	-				+0.1
2,015,345	+				+0.9
2,015,345	+				-2.5
2,015,345	+				-1.7
2,015,346	-				-2.5
2,015,346	-				+0.1
2,015,358	+				-1.1
2,015,358	+				-0.3
2,015,359	-				-1.1
2,015,359	-				+0.2
2,015,359	-				+0.1
2,015,359	-				-0.6
2,015,384	+				-1.9
2,015,384	+				+0.9
2,015,384	+				-0.9
2,015,385	-				+0.1
2,015,402	-				-0.5
2,015,402	-				-1.7
2,015,402	-				+4.5
2,015,402	-				+0.7
2,015,419	-				-0.1
2,015,431	-				+1.0
2,015,431	-				-0.9
2,015,576	+		DZA65_RS09585	0.15	+0.3
2,015,792	+		DZA65_RS09585	0.35	-0.3
2,015,792	+		DZA65_RS09585	0.35	+1.3
2,015,867	-		DZA65_RS09585	0.42	-0.9
2,015,867	-		DZA65_RS09585	0.42	-1.7
2,015,867	-		DZA65_RS09585	0.42	+3.0
2,015,867	-		DZA65_RS09585	0.42	+0.7
2,015,889	-		DZA65_RS09585	0.44	+2.7
2,015,892	+		DZA65_RS09585	0.44	-1.3
2,015,892	+		DZA65_RS09585	0.44	+3.1
2,015,892	+		DZA65_RS09585	0.44	-0.7
2,015,893	-		DZA65_RS09585	0.44	-1.7
2,015,893	-		DZA65_RS09585	0.44	-1.9
2,015,903	+		DZA65_RS09585	0.45	-0.3
2,015,905	+		DZA65_RS09585	0.46	+1.6
2,015,906	-		DZA65_RS09585	0.46	-2.8
2,015,906	-		DZA65_RS09585	0.46	-0.7
2,015,906	-		DZA65_RS09585	0.46	-2.5
2,015,923	+		DZA65_RS09585	0.47	+0.7
2,015,923	+		DZA65_RS09585	0.47	-1.7
2,016,135	-		DZA65_RS09585	0.67	+1.1
2,016,200	+		DZA65_RS09585	0.73	-0.3
2,016,201	-		DZA65_RS09585	0.73	-1.7
2,016,201	-		DZA65_RS09585	0.73	+0.5
2,016,215	-		DZA65_RS09585	0.74	+0.1
2,016,293	-		DZA65_RS09585	0.81	-0.1