Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08875

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,870,780	-				-0.3
1,870,795	-				-2.5
1,870,901	-				+1.2
1,870,960	+				-0.7
1,871,078	+				-0.8
1,871,079	-				+3.2
1,871,138	+				-3.0
1,871,139	-				-1.3
1,871,139	-				+1.4
1,871,156	-				-0.9
1,871,202	+				+1.8
1,871,202	+				-1.3
1,871,202	+				-2.8
1,871,269	-				+0.2
1,871,269	-				-0.9
1,871,533	+		DZA65_RS08870	0.61	-0.3
1,871,533	+		DZA65_RS08870	0.61	-2.3
1,871,533	+		DZA65_RS08870	0.61	-1.3
1,871,574	+		DZA65_RS08870	0.74	+0.9
1,871,574	+		DZA65_RS08870	0.74	-0.9
1,871,574	+		DZA65_RS08870	0.74	-0.3
1,871,574	+		DZA65_RS08870	0.74	-1.1
1,871,574	+		DZA65_RS08870	0.74	+1.3
1,871,574	+		DZA65_RS08870	0.74	-0.9
1,871,574	+		DZA65_RS08870	0.74	-0.1
1,871,574	+		DZA65_RS08870	0.74	+1.3
1,871,574	+				-0.9
1,871,574	+		DZA65_RS08870	0.74	+0.7
1,871,574	+		DZA65_RS08870	0.74	-0.3
1,871,574	+		DZA65_RS08870	0.74	+0.8
1,871,574	+		DZA65_RS08870	0.74	-1.3
1,871,574	+		DZA65_RS08870	0.74	-1.3
1,871,579	-		DZA65_RS08870	0.76	+0.0
1,871,579	-		DZA65_RS08870	0.76	+0.1
1,871,579	-		DZA65_RS08870	0.76	-2.2
1,871,579	-		DZA65_RS08870	0.76	+3.5
1,871,579	-		DZA65_RS08870	0.76	+0.9
1,871,579	-		DZA65_RS08870	0.76	+1.2
1,871,579	-		DZA65_RS08870	0.76	+0.4
1,871,579	-		DZA65_RS08870	0.76	-2.0
1,871,579	-		DZA65_RS08870	0.76	+0.3
1,871,742	+				-0.3
1,871,742	+				-1.3
1,871,742	+				+2.6
1,871,743	-				+2.3
1,871,744	+				-0.9
1,871,744	+				-1.1
1,871,744	+				+1.0
1,871,744	+				+1.0
1,871,744	+				-1.6
1,871,744	+				+1.3
1,871,744	+				-2.5
1,871,745	-				+0.2
1,871,745	-				+0.3
1,871,745	-				-4.1
1,871,745	-				-0.3
1,871,745	-				-0.4
1,871,745	-				-2.7
1,871,745	-				+1.1
1,871,745	-				+2.8
1,871,745	-				-1.8
1,871,745	-				-2.3
1,871,814	+				-2.3
1,871,814	+				-1.3
1,871,843	-				+1.3
1,871,843	-				-0.3
1,871,892	+		DZA65_RS08875	0.10	-1.3
1,871,892	+		DZA65_RS08875	0.10	-1.9
1,871,893	-		DZA65_RS08875	0.10	+0.1
1,871,911	-		DZA65_RS08875	0.12	+2.5
1,871,911	-		DZA65_RS08875	0.12	+1.1
1,871,911	-		DZA65_RS08875	0.12	-0.0
1,871,911	-		DZA65_RS08875	0.12	-1.5
1,872,035	-		DZA65_RS08875	0.21	-2.5
1,872,049	-		DZA65_RS08875	0.22	-2.3
1,872,049	-		DZA65_RS08875	0.22	+0.7
1,872,097	+		DZA65_RS08875	0.26	-1.8
1,872,098	-		DZA65_RS08875	0.26	-0.3
1,872,098	-		DZA65_RS08875	0.26	+2.4
1,872,099	+				-2.7
1,872,099	+		DZA65_RS08875	0.26	-2.7
1,872,100	-		DZA65_RS08875	0.26	+0.5
1,872,100	-		DZA65_RS08875	0.26	-0.9
1,872,100	-		DZA65_RS08875	0.26	+1.9
1,872,100	-		DZA65_RS08875	0.26	+1.2
1,872,122	+		DZA65_RS08875	0.28	-0.3
1,872,122	+		DZA65_RS08875	0.28	+0.3
1,872,122	+		DZA65_RS08875	0.28	+2.7
1,872,153	-		DZA65_RS08875	0.30	+1.7
1,872,356	+		DZA65_RS08875	0.46	-3.2
1,872,356	+		DZA65_RS08875	0.46	+0.3
1,872,420	-		DZA65_RS08875	0.51	+0.3
1,872,503	+		DZA65_RS08875	0.58	-1.9
1,872,504	-		DZA65_RS08875	0.58	-1.1
1,872,664	+		DZA65_RS08875	0.70	-0.7
1,872,664	+		DZA65_RS08875	0.70	-1.5
1,872,664	+		DZA65_RS08875	0.70	+2.0
1,872,665	-		DZA65_RS08875	0.70	-2.3
1,872,665	-		DZA65_RS08875	0.70	-0.3
1,872,665	-		DZA65_RS08875	0.70	+0.5
1,872,665	-		DZA65_RS08875	0.70	+2.7
1,872,727	+		DZA65_RS08875	0.75	-0.9
1,872,727	+		DZA65_RS08875	0.75	+0.7
1,872,728	-		DZA65_RS08875	0.75	-0.4
1,872,728	-		DZA65_RS08875	0.75	+0.2
1,872,728	-		DZA65_RS08875	0.75	-0.4
1,872,728	-		DZA65_RS08875	0.75	-1.7
1,872,728	-		DZA65_RS08875	0.75	-1.9
1,872,812	-		DZA65_RS08875	0.82	-0.0
1,872,812	-		DZA65_RS08875	0.82	+0.7
1,872,879	+		DZA65_RS08875	0.87	+1.3
1,872,880	-		DZA65_RS08875	0.87	-1.3
1,872,883	+		DZA65_RS08875	0.87	-0.7
1,872,887	+		DZA65_RS08875	0.88	+2.3
1,872,911	-		DZA65_RS08875	0.89	-2.3
1,872,911	-		DZA65_RS08875	0.89	-0.7
1,872,917	-				-0.4
1,872,922	-				+1.2
1,872,922	-				+1.9
1,872,922	-				+0.3
1,872,966	+				-1.4
1,873,014	-				+1.9
1,873,036	+				-1.1
1,873,036	+				+2.3
1,873,037	-				-1.3
1,873,172	-				-2.3
1,873,274	+		DZA65_RS08880	0.88	-1.3
1,873,274	+		DZA65_RS08880	0.88	+1.6
1,873,305	+				-1.7
1,873,320	+				+0.7
1,873,371	+				-0.9
1,873,371	+				-1.7
1,873,371	+				+0.1
1,873,372	-				-1.3
1,873,409	+				-2.4
1,873,410	-				+2.3
1,873,410	-				-0.7
1,873,486	+		DZA65_RS08885	0.12	-1.7
1,873,487	-		DZA65_RS08885	0.12	+1.0
1,873,487	-		DZA65_RS08885	0.12	+0.5
1,873,487	-		DZA65_RS08885	0.12	+2.8
1,873,487	-		DZA65_RS08885	0.12	-1.3
1,873,487	-		DZA65_RS08885	0.12	+0.7
1,873,488	+		DZA65_RS08885	0.12	-2.3
1,873,488	+		DZA65_RS08885	0.12	+0.1
1,873,488	+		DZA65_RS08885	0.12	-0.3
1,873,590	-		DZA65_RS08885	0.25	+1.5
1,873,590	-		DZA65_RS08885	0.25	+0.3
1,873,609	-		DZA65_RS08885	0.27	-1.7
1,873,617	+		DZA65_RS08885	0.28	-1.3
1,873,617	+		DZA65_RS08885	0.28	+2.9
1,873,618	-		DZA65_RS08885	0.29	+0.3
1,873,653	+		DZA65_RS08885	0.33	-0.8
1,873,653	+		DZA65_RS08885	0.33	+0.7
1,873,653	+		DZA65_RS08885	0.33	-0.7
1,873,653	+		DZA65_RS08885	0.33	+1.0
1,873,654	-		DZA65_RS08885	0.33	-0.3
1,873,654	-		DZA65_RS08885	0.33	+0.7
1,873,654	-		DZA65_RS08885	0.33	-1.2
1,873,671	+		DZA65_RS08885	0.35	-0.3
1,873,671	+		DZA65_RS08885	0.35	+0.7
1,873,672	-		DZA65_RS08885	0.35	-0.3
1,873,725	-		DZA65_RS08885	0.42	-0.9
1,873,842	+		DZA65_RS08885	0.57	+0.7
1,873,842	+		DZA65_RS08885	0.57	-0.9
1,873,843	-		DZA65_RS08885	0.57	-0.3
1,873,843	-		DZA65_RS08885	0.57	-1.3
1,873,843	-		DZA65_RS08885	0.57	-1.8
1,873,843	-		DZA65_RS08885	0.57	-0.3
1,873,843	-		DZA65_RS08885	0.57	+1.1
1,873,898	+		DZA65_RS08885	0.64	-0.3
1,873,898	+				-1.3
1,873,920	+		DZA65_RS08885	0.67	-0.3
1,873,920	+		DZA65_RS08885	0.67	+0.9
1,873,921	-		DZA65_RS08885	0.67	-0.3
1,873,981	-		DZA65_RS08885	0.74	+1.3
1,874,001	+		DZA65_RS08885	0.77	+2.8
1,874,001	+		DZA65_RS08885	0.77	+2.4
1,874,002	-		DZA65_RS08885	0.77	-0.7