Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08690

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,839,526	+		DZA65_RS08685	0.86	+0.1
1,839,526	+		DZA65_RS08685	0.86	+0.1
1,839,571	+		DZA65_RS08685	0.88	-1.7
1,839,659	+				-0.1
1,839,673	+				+2.3
1,839,673	+				+1.2
1,839,673	+				-1.9
1,839,673	+				-0.3
1,839,674	-				-2.1
1,839,674	-				+1.1
1,839,674	-				+2.1
1,839,794	+				+2.0
1,839,794	+				-0.9
1,839,818	+				-1.7
1,839,818	+				-0.2
1,839,819	-				+0.7
1,839,819	-				-1.3
1,839,842	+				-0.7
1,839,842	+				+0.0
1,839,843	-				-1.1
1,839,843	-				-0.1
1,839,843	-				-0.4
1,839,847	+				-2.3
1,839,847	+				+0.5
1,839,848	-				+0.1
1,839,848	-				+0.5
1,839,848	-				-1.9
1,839,848	-				+3.4
1,839,848	-				-2.1
1,839,848	-				+2.3
1,839,848	-				-0.9
1,839,949	+				+0.7
1,840,032	+				-0.3
1,840,032	+				+0.1
1,840,032	+				-1.3
1,840,032	+				-1.7
1,840,032	+				-0.9
1,840,033	-				-1.3
1,840,033	-				-0.7
1,840,033	-				-0.6
1,840,033	-				+1.1
1,840,033	-				-2.0
1,840,033	-				-3.4
1,840,037	+				+0.8
1,840,038	-				-1.9
1,840,038	-				+0.6
1,840,077	+				-2.3
1,840,089	+				+0.8
1,840,092	+				-2.0
1,840,116	+				-2.1
1,840,116	+				+2.3
1,840,138	+				+1.5
1,840,138	+				-1.5
1,840,139	-				-0.3
1,840,180	+				+3.2
1,840,240	+				+1.7
1,840,240	+				-0.1
1,840,240	+				+0.3
1,840,240	+				+0.7
1,840,288	-				+0.4
1,840,310	+				+1.0
1,840,311	-				+0.7
1,840,315	-				-0.9
1,840,330	+				+0.7
1,840,331	-				+1.0
1,840,331	-				+2.0
1,840,331	-				-0.5
1,840,331	-				-0.3
1,840,333	+				+2.7
1,840,333	+				+0.2
1,840,333	+				-0.3
1,840,334	-				-0.5
1,840,334	-				+0.1
1,840,334	-				-2.1
1,840,349	-				+2.4
1,840,417	+				+0.4
1,840,417	+				+2.1
1,840,418	-				-0.1
1,840,421	+				+1.2
1,840,422	-				+2.6
1,840,446	+				+1.7
1,840,446	+				+1.4
1,840,446	+				+1.6
1,840,446	+				+0.4
1,840,446	+				-0.6
1,840,447	-				+1.8
1,840,447	-				-0.1
1,840,474	+				-1.1
1,840,474	+				-1.3
1,840,475	-				-1.0
1,840,475	-				+1.7
1,840,476	+				-0.6
1,840,476	+				-0.1
1,840,477	-				+0.1
1,840,504	-				-0.7
1,840,535	+				+1.3
1,840,536	-				-2.3
1,840,536	-				-0.9
1,840,536	-				-1.9
1,840,631	-		DZA65_RS08690	0.21	-1.2
1,840,632	+		DZA65_RS08690	0.22	-0.3
1,840,741	+		DZA65_RS08690	0.36	+0.7
1,840,742	-		DZA65_RS08690	0.36	+0.3
1,840,742	-		DZA65_RS08690	0.36	+1.0
1,840,754	+		DZA65_RS08690	0.38	-0.1
1,840,755	-				+0.5
1,840,755	-		DZA65_RS08690	0.38	+0.7
1,840,755	-		DZA65_RS08690	0.38	+1.3
1,840,755	-		DZA65_RS08690	0.38	+1.7
1,840,755	-		DZA65_RS08690	0.38	-0.8
1,840,792	+		DZA65_RS08690	0.42	-1.7
1,840,792	+		DZA65_RS08690	0.42	+0.8
1,840,792	+				-1.9
1,840,793	-		DZA65_RS08690	0.43	-2.5
1,840,793	-		DZA65_RS08690	0.43	-0.1
1,840,793	-		DZA65_RS08690	0.43	+1.5
1,840,854	+		DZA65_RS08690	0.51	-0.3
1,840,854	+		DZA65_RS08690	0.51	-0.1
1,840,914	+		DZA65_RS08690	0.58	-0.8
1,840,918	+		DZA65_RS08690	0.59	-0.3
1,840,919	-		DZA65_RS08690	0.59	-0.2
1,840,951	+		DZA65_RS08690	0.63	-0.1
1,840,952	-		DZA65_RS08690	0.63	+3.3
1,841,021	+		DZA65_RS08690	0.72	-2.9
1,841,022	-		DZA65_RS08690	0.72	-0.5
1,841,086	-		DZA65_RS08690	0.81	+0.9
1,841,129	-		DZA65_RS08690	0.86	+2.0
1,841,192	+				+0.2
1,841,193	-				-1.3
1,841,212	+				-0.6
1,841,266	+				-1.3
1,841,266	+				+0.2
1,841,266	+				+0.1
1,841,315	+				-2.3
1,841,316	-				+1.0
1,841,342	+				-0.3
1,841,342	+				+0.5
1,841,343	-				+0.2
1,841,354	+				+3.7
1,841,404	+				+0.3
1,841,421	+				+0.1
1,841,422	-				-0.7
1,841,433	+				-1.8
1,841,433	+				-0.3
1,841,433	+				-0.2
1,841,434	-				+1.4
1,841,434	-				+1.0
1,841,500	-		DZA65_RS08695	0.12	+0.3
1,841,563	+		DZA65_RS08695	0.16	-1.9
1,841,563	+		DZA65_RS08695	0.16	-0.8
1,841,564	-		DZA65_RS08695	0.16	-0.6
1,841,565	+		DZA65_RS08695	0.17	-2.1
1,841,595	+		DZA65_RS08695	0.18	+1.7
1,841,639	+		DZA65_RS08695	0.21	-0.9
1,841,640	-		DZA65_RS08695	0.21	+1.1
1,841,659	+		DZA65_RS08695	0.22	-0.3
1,841,659	+		DZA65_RS08695	0.22	+1.5
1,841,659	+		DZA65_RS08695	0.22	-0.3
1,841,659	+		DZA65_RS08695	0.22	-1.9
1,841,659	+		DZA65_RS08695	0.22	+1.2
1,841,659	+		DZA65_RS08695	0.22	+1.3
1,841,659	+		DZA65_RS08695	0.22	+1.5
1,841,660	-		DZA65_RS08695	0.23	-1.3
1,841,660	-		DZA65_RS08695	0.23	-0.9
1,841,660	-		DZA65_RS08695	0.23	-0.9
1,841,660	-		DZA65_RS08695	0.23	-1.7
1,841,737	-		DZA65_RS08695	0.27	-0.6
1,841,737	-		DZA65_RS08695	0.27	+0.1
1,841,737	-		DZA65_RS08695	0.27	-2.1
1,841,752	+		DZA65_RS08695	0.28	-0.9
1,841,752	+		DZA65_RS08695	0.28	-3.0
1,841,752	+		DZA65_RS08695	0.28	+0.7
1,841,753	-		DZA65_RS08695	0.28	-2.3
1,841,755	+		DZA65_RS08695	0.29	+1.0
1,841,755	+		DZA65_RS08695	0.29	+0.4
1,841,818	-		DZA65_RS08695	0.33	-0.6
1,841,851	+		DZA65_RS08695	0.35	-1.1
1,841,851	+		DZA65_RS08695	0.35	-0.1
1,841,851	+		DZA65_RS08695	0.35	-0.0
1,841,852	-		DZA65_RS08695	0.35	+0.1
1,841,852	-		DZA65_RS08695	0.35	-1.9
1,841,852	-		DZA65_RS08695	0.35	-1.3
1,841,887	-		DZA65_RS08695	0.37	-0.3
1,841,887	-		DZA65_RS08695	0.37	+0.7
1,841,892	+		DZA65_RS08695	0.37	+0.7
1,841,892	+		DZA65_RS08695	0.37	-0.7
1,842,046	-		DZA65_RS08695	0.47	-1.1
1,842,046	-		DZA65_RS08695	0.47	-1.3
1,842,046	-		DZA65_RS08695	0.47	-0.9
1,842,046	-		DZA65_RS08695	0.47	+0.3
1,842,202	-		DZA65_RS08695	0.57	-0.9
1,842,226	-		DZA65_RS08695	0.58	-1.9
1,842,226	-		DZA65_RS08695	0.58	-0.3
1,842,226	-		DZA65_RS08695	0.58	+1.3