Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08190

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,712,168	+		DZA65_RS08180	0.10	-0.3
1,712,169	-		DZA65_RS08180	0.11	+2.0
1,712,169	-		DZA65_RS08180	0.11	-1.3
1,712,169	-		DZA65_RS08180	0.11	+2.3
1,712,169	-		DZA65_RS08180	0.11	+0.3
1,712,283	+		DZA65_RS08180	0.28	+1.0
1,712,334	+		DZA65_RS08180	0.36	+0.4
1,712,334	+		DZA65_RS08180	0.36	-0.0
1,712,334	+		DZA65_RS08180	0.36	+0.7
1,712,334	+		DZA65_RS08180	0.36	+1.7
1,712,335	-		DZA65_RS08180	0.36	+0.3
1,712,335	-		DZA65_RS08180	0.36	-0.3
1,712,335	-		DZA65_RS08180	0.36	-1.6
1,712,335	-		DZA65_RS08180	0.36	-0.8
1,712,373	+		DZA65_RS08180	0.42	+0.7
1,712,373	+		DZA65_RS08180	0.42	-1.9
1,712,374	-		DZA65_RS08180	0.43	-1.6
1,712,374	-		DZA65_RS08180	0.43	-1.6
1,712,425	+		DZA65_RS08180	0.50	+0.3
1,712,425	+		DZA65_RS08180	0.50	-1.6
1,712,425	+		DZA65_RS08180	0.50	-0.5
1,712,425	+		DZA65_RS08180	0.50	-1.5
1,712,425	+		DZA65_RS08180	0.50	+1.3
1,712,426	-		DZA65_RS08180	0.51	-1.3
1,712,426	-		DZA65_RS08180	0.51	-0.6
1,712,426	-		DZA65_RS08180	0.51	+0.7
1,712,426	-		DZA65_RS08180	0.51	+2.0
1,712,426	-		DZA65_RS08180	0.51	-1.4
1,712,426	-		DZA65_RS08180	0.51	+1.3
1,712,426	-		DZA65_RS08180	0.51	-1.9
1,712,426	-		DZA65_RS08180	0.51	-1.1
1,712,426	-		DZA65_RS08180	0.51	-1.3
1,712,512	+		DZA65_RS08180	0.64	-1.7
1,712,534	+		DZA65_RS08180	0.67	+0.8
1,712,611	+		DZA65_RS08180	0.79	-0.8
1,712,611	+		DZA65_RS08180	0.79	-0.9
1,712,611	+		DZA65_RS08180	0.79	-2.3
1,712,611	+		DZA65_RS08180	0.79	-0.0
1,712,611	+		DZA65_RS08180	0.79	+1.7
1,712,611	+		DZA65_RS08180	0.79	-3.2
1,712,611	+		DZA65_RS08180	0.79	-0.3
1,712,611	+		DZA65_RS08180	0.79	-0.9
1,712,611	+		DZA65_RS08180	0.79	+1.1
1,712,611	+		DZA65_RS08180	0.79	+2.3
1,712,611	+		DZA65_RS08180	0.79	-0.6
1,712,611	+		DZA65_RS08180	0.79	-0.2
1,712,611	+		DZA65_RS08180	0.79	-0.0
1,712,611	+		DZA65_RS08180	0.79	-1.6
1,712,611	+		DZA65_RS08180	0.79	+1.3
1,712,612	-		DZA65_RS08180	0.80	-0.3
1,712,612	-		DZA65_RS08180	0.80	-2.6
1,712,612	-		DZA65_RS08180	0.80	-1.0
1,712,612	-		DZA65_RS08180	0.80	-2.6
1,712,612	-		DZA65_RS08180	0.80	-2.1
1,712,612	-		DZA65_RS08180	0.80	-2.0
1,712,612	-		DZA65_RS08180	0.80	+0.3
1,712,612	-		DZA65_RS08180	0.80	+0.1
1,712,612	-		DZA65_RS08180	0.80	-0.6
1,712,612	-		DZA65_RS08180	0.80	+0.1
1,712,612	-		DZA65_RS08180	0.80	-1.3
1,712,638	-		DZA65_RS08180	0.84	+2.0
1,712,638	-		DZA65_RS08180	0.84	-3.1
1,712,638	-		DZA65_RS08180	0.84	-0.9
1,712,727	+				+2.3
1,712,727	+				+0.7
1,712,733	+				+0.1
1,712,734	-				+0.1
1,712,740	+				+1.8
1,712,740	+				-1.9
1,712,740	+				-0.7
1,712,741	-				+0.0
1,712,741	-				-0.9
1,712,741	-				+0.7
1,712,749	+				-0.6
1,712,926	-				-2.3
1,712,986	+				+0.4
1,712,986	+				+0.7
1,712,986	+				-0.1
1,712,986	+				-1.0
1,712,987	-				+0.7
1,712,987	-				-0.3
1,712,992	+				-1.8
1,712,992	+				-2.5
1,712,992	+				-1.5
1,712,993	-				+1.8
1,712,993	-				+1.1
1,712,993	-				+2.8
1,712,993	-				-0.5
1,712,993	-				-1.6
1,712,993	-				+0.7
1,712,993	-				-1.1
1,712,993	-				+0.7
1,713,012	+				-2.1
1,713,013	-				-1.1
1,713,046	+				+0.0
1,713,046	+				+1.9
1,713,046	+				-1.3
1,713,046	+				-2.5
1,713,046	+				+1.7
1,713,046	+				-0.6
1,713,046	+				-0.9
1,713,046	+				-1.3
1,713,047	-				-0.3
1,713,047	-				+3.1
1,713,047	-				-0.9
1,713,047	-				-2.6
1,713,047	-				+0.7
1,713,047	-				-1.3
1,713,047	-				-0.3
1,713,047	-				-0.9
1,713,298	-		DZA65_RS08190	0.14	-0.9
1,713,378	+		DZA65_RS08190	0.22	-1.5
1,713,379	-		DZA65_RS08190	0.22	-2.3
1,713,559	+		DZA65_RS08190	0.39	-2.5
1,713,560	-		DZA65_RS08190	0.39	-0.9
1,713,979	+		DZA65_RS08190	0.80	-2.3
1,713,979	+		DZA65_RS08190	0.80	-1.6
1,713,980	-				-2.1
1,714,004	+		DZA65_RS08190	0.83	-0.0
1,714,004	+		DZA65_RS08190	0.83	-3.0
1,714,007	+		DZA65_RS08190	0.83	-0.9
1,714,007	+		DZA65_RS08190	0.83	-2.8
1,714,007	+		DZA65_RS08190	0.83	+2.4
1,714,008	-		DZA65_RS08190	0.83	-0.3
1,714,013	+		DZA65_RS08190	0.83	-2.9
1,714,014	-		DZA65_RS08190	0.84	-2.3
1,714,289	+				-0.6
1,714,289	+				-1.3
1,714,289	+				+2.1
1,714,289	+				-0.6
1,714,290	-				+1.3
1,714,309	+				-0.0
1,714,309	+				+0.1
1,714,309	+				-0.3
1,714,395	+				-0.6
1,714,395	+				+1.1
1,714,396	-				-0.1
1,714,396	-				+0.1
1,714,400	+				+0.7
1,714,400	+				-0.9
1,714,401	-				-2.1
1,714,639	+		DZA65_RS08195	0.15	-2.3
1,714,640	-		DZA65_RS08195	0.15	-0.6
1,714,640	-		DZA65_RS08195	0.15	-0.4
1,714,640	-		DZA65_RS08195	0.15	-0.2
1,714,695	+		DZA65_RS08195	0.18	-1.4
1,714,720	+		DZA65_RS08195	0.19	+0.6
1,714,901	+		DZA65_RS08195	0.27	-0.0
1,714,965	+		DZA65_RS08195	0.30	-3.0
1,714,965	+		DZA65_RS08195	0.30	-1.3
1,714,966	-		DZA65_RS08195	0.30	+0.7
1,714,966	-		DZA65_RS08195	0.30	+0.5
1,714,966	-		DZA65_RS08195	0.30	-0.9
1,714,966	-		DZA65_RS08195	0.30	-0.9
1,714,966	-		DZA65_RS08195	0.30	-0.2
1,714,966	-		DZA65_RS08195	0.30	-0.9
1,715,048	+		DZA65_RS08195	0.34	+0.2
1,715,048	+		DZA65_RS08195	0.34	+2.4
1,715,048	+		DZA65_RS08195	0.34	+2.7
1,715,049	-		DZA65_RS08195	0.34	+2.0
1,715,092	+		DZA65_RS08195	0.36	+0.6
1,715,105	+		DZA65_RS08195	0.37	+0.9
1,715,106	-		DZA65_RS08195	0.37	-1.3
1,715,106	-		DZA65_RS08195	0.37	+2.1
1,715,106	-		DZA65_RS08195	0.37	+1.7
1,715,106	-		DZA65_RS08195	0.37	-1.3