Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06795

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,409,826	+				-0.4
1,409,942	+		DZA65_RS06790	0.12	-2.6
1,409,942	+		DZA65_RS06790	0.12	-1.1
1,409,943	-		DZA65_RS06790	0.12	-0.5
1,409,943	-		DZA65_RS06790	0.12	+1.1
1,410,017	-		DZA65_RS06790	0.19	-1.1
1,410,134	+		DZA65_RS06790	0.32	+0.2
1,410,134	+		DZA65_RS06790	0.32	+0.9
1,410,134	+		DZA65_RS06790	0.32	+0.1
1,410,135	-		DZA65_RS06790	0.32	-2.7
1,410,135	-		DZA65_RS06790	0.32	-0.8
1,410,136	+		DZA65_RS06790	0.32	+3.0
1,410,137	-		DZA65_RS06790	0.32	-0.3
1,410,137	-		DZA65_RS06790	0.32	+4.2
1,410,137	-		DZA65_RS06790	0.32	-1.1
1,410,137	-		DZA65_RS06790	0.32	-1.1
1,410,137	-		DZA65_RS06790	0.32	+0.5
1,410,137	-		DZA65_RS06790	0.32	-1.9
1,410,211	+		DZA65_RS06790	0.40	-1.8
1,410,211	+		DZA65_RS06790	0.40	-0.9
1,410,329	+		DZA65_RS06790	0.52	-0.1
1,410,329	+		DZA65_RS06790	0.52	-2.1
1,410,404	+		DZA65_RS06790	0.60	+1.2
1,410,405	-		DZA65_RS06790	0.60	+0.6
1,410,406	+		DZA65_RS06790	0.60	+3.9
1,410,406	+		DZA65_RS06790	0.60	-1.7
1,410,406	+		DZA65_RS06790	0.60	-1.8
1,410,406	+		DZA65_RS06790	0.60	+4.6
1,410,406	+		DZA65_RS06790	0.60	+2.1
1,410,406	+		DZA65_RS06790	0.60	-0.2
1,410,406	+		DZA65_RS06790	0.60	+1.7
1,410,406	+		DZA65_RS06790	0.60	+0.6
1,410,406	+		DZA65_RS06790	0.60	+2.5
1,410,407	-		DZA65_RS06790	0.60	+0.3
1,410,407	-		DZA65_RS06790	0.60	+0.6
1,410,407	-		DZA65_RS06790	0.60	-0.3
1,410,407	-		DZA65_RS06790	0.60	-2.3
1,410,407	-		DZA65_RS06790	0.60	-0.4
1,410,407	-		DZA65_RS06790	0.60	-0.4
1,410,407	-		DZA65_RS06790	0.60	-0.3
1,410,407	-		DZA65_RS06790	0.60	-2.6
1,410,407	-		DZA65_RS06790	0.60	-2.8
1,410,441	-		DZA65_RS06790	0.64	-1.7
1,410,701	+				-1.2
1,410,701	+				-1.6
1,410,743	+				-1.1
1,410,744	-				-0.9
1,410,744	-				-1.9
1,410,756	-				-0.6
1,410,774	+				+1.5
1,410,774	+				+0.0
1,410,774	+				+0.2
1,410,775	-				-1.1
1,410,788	+				-1.4
1,410,803	-				+1.8
1,410,803	-				+0.9
1,410,803	-				-1.9
1,410,803	-				-1.4
1,410,853	+				-2.4
1,410,854	-				-1.8
1,410,854	-				-0.4
1,411,123	-		DZA65_RS06795	0.21	+2.3
1,411,134	+		DZA65_RS06795	0.22	-0.2
1,411,134	+		DZA65_RS06795	0.22	-1.1
1,411,135	-		DZA65_RS06795	0.22	-2.1
1,411,135	-		DZA65_RS06795	0.22	-2.1
1,411,263	+		DZA65_RS06795	0.31	-1.1
1,411,263	+		DZA65_RS06795	0.31	+0.8
1,411,263	+				-1.7
1,411,263	+		DZA65_RS06795	0.31	-0.1
1,411,263	+		DZA65_RS06795	0.31	-0.7
1,411,263	+		DZA65_RS06795	0.31	+3.2
1,411,263	+		DZA65_RS06795	0.31	+0.6
1,411,263	+		DZA65_RS06795	0.31	+1.2
1,411,263	+		DZA65_RS06795	0.31	+1.6
1,411,263	+		DZA65_RS06795	0.31	+6.6
1,411,263	+		DZA65_RS06795	0.31	-2.7
1,411,263	+		DZA65_RS06795	0.31	+0.7
1,411,263	+		DZA65_RS06795	0.31	-1.3
1,411,263	+		DZA65_RS06795	0.31	-1.4
1,411,263	+		DZA65_RS06795	0.31	+0.4
1,411,263	+		DZA65_RS06795	0.31	-0.6
1,411,263	+		DZA65_RS06795	0.31	-0.9
1,411,263	+		DZA65_RS06795	0.31	+0.9
1,411,263	+		DZA65_RS06795	0.31	-1.4
1,411,263	+		DZA65_RS06795	0.31	-2.4
1,411,264	-		DZA65_RS06795	0.31	-1.4
1,411,264	-		DZA65_RS06795	0.31	-1.1
1,411,264	-		DZA65_RS06795	0.31	-0.7
1,411,264	-		DZA65_RS06795	0.31	+1.2
1,411,264	-		DZA65_RS06795	0.31	-1.2
1,411,264	-		DZA65_RS06795	0.31	+0.2
1,411,264	-		DZA65_RS06795	0.31	-2.4
1,411,264	-		DZA65_RS06795	0.31	-1.1
1,411,264	-		DZA65_RS06795	0.31	+3.0
1,411,264	-		DZA65_RS06795	0.31	-0.8
1,411,264	-		DZA65_RS06795	0.31	+2.9
1,411,264	-		DZA65_RS06795	0.31	-0.1
1,411,264	-		DZA65_RS06795	0.31	-0.7
1,411,264	-		DZA65_RS06795	0.31	+1.2
1,411,264	-		DZA65_RS06795	0.31	+0.1
1,411,264	-		DZA65_RS06795	0.31	+1.2
1,411,264	-		DZA65_RS06795	0.31	-1.4
1,411,264	-		DZA65_RS06795	0.31	-1.6
1,411,264	-		DZA65_RS06795	0.31	+0.2
1,411,264	-		DZA65_RS06795	0.31	+2.0
1,411,264	-		DZA65_RS06795	0.31	-1.1
1,411,275	-		DZA65_RS06795	0.32	+0.2
1,411,485	+		DZA65_RS06795	0.47	+0.3
1,411,485	+		DZA65_RS06795	0.47	+1.4
1,411,486	-		DZA65_RS06795	0.47	+2.5
1,411,486	-		DZA65_RS06795	0.47	-1.4
1,411,486	-		DZA65_RS06795	0.47	-0.1
1,411,486	-		DZA65_RS06795	0.47	-1.6
1,411,486	-		DZA65_RS06795	0.47	+2.0
1,411,486	-		DZA65_RS06795	0.47	-2.4
1,411,486	-		DZA65_RS06795	0.47	-0.9
1,411,486	-		DZA65_RS06795	0.47	+0.3
1,411,555	+		DZA65_RS06795	0.51	-0.9
1,411,585	+		DZA65_RS06795	0.54	-1.6
1,411,635	-		DZA65_RS06795	0.57	-1.1
1,411,891	+		DZA65_RS06795	0.75	-0.7
1,411,891	+		DZA65_RS06795	0.75	+1.3
1,411,892	-		DZA65_RS06795	0.75	-0.1
1,411,892	-		DZA65_RS06795	0.75	-0.4
1,411,892	-		DZA65_RS06795	0.75	-1.4
1,411,892	-		DZA65_RS06795	0.75	+1.7
1,411,892	-		DZA65_RS06795	0.75	+0.0
1,411,920	+		DZA65_RS06795	0.77	+0.5
1,411,920	+		DZA65_RS06795	0.77	-3.1
1,411,920	+		DZA65_RS06795	0.77	+1.0
1,411,920	+		DZA65_RS06795	0.77	+2.2
1,411,921	-		DZA65_RS06795	0.77	+1.6
1,411,921	-		DZA65_RS06795	0.77	-1.4
1,411,921	-		DZA65_RS06795	0.77	-1.1
1,411,921	-		DZA65_RS06795	0.77	-0.3
1,411,921	-		DZA65_RS06795	0.77	-0.1
1,411,925	+		DZA65_RS06795	0.77	+0.6
1,411,925	+		DZA65_RS06795	0.77	+0.7
1,411,925	+		DZA65_RS06795	0.77	+10.2
1,411,926	-		DZA65_RS06795	0.77	+1.4
1,412,010	+		DZA65_RS06795	0.83	-1.3
1,412,011	-		DZA65_RS06795	0.83	-2.1
1,412,011	-		DZA65_RS06795	0.83	-3.1
1,412,011	-		DZA65_RS06795	0.83	-2.1
1,412,011	-		DZA65_RS06795	0.83	+0.6
1,412,011	-		DZA65_RS06795	0.83	+1.5
1,412,186	+				-1.9
1,412,186	+				+1.0
1,412,280	+				+0.7
1,412,280	+				-1.9
1,412,281	-				-0.9
1,412,281	-				-1.7
1,412,281	-				-1.7
1,412,281	-				+1.9
1,412,281	-				-0.3
1,412,286	+				-0.2
1,412,286	+				+0.0
1,412,287	-				-1.3
1,412,289	+				-1.3
1,412,289	+				+0.1
1,412,290	-				-1.1
1,412,344	+				+0.9
1,412,477	-		DZA65_RS06800	0.26	+0.9
1,412,560	+		DZA65_RS06800	0.38	-1.0
1,412,692	-		DZA65_RS06800	0.55	+0.9
1,412,781	+		DZA65_RS06800	0.67	-1.7
1,412,781	+		DZA65_RS06800	0.67	-1.1
1,412,781	+		DZA65_RS06800	0.67	+1.2
1,412,782	-		DZA65_RS06800	0.67	-2.4
1,412,794	-		DZA65_RS06800	0.69	+0.3
1,412,815	-		DZA65_RS06800	0.72	+1.4
1,412,815	-		DZA65_RS06800	0.72	+0.3
1,412,877	+		DZA65_RS06800	0.80	-1.9
1,412,877	+		DZA65_RS06800	0.80	-1.9
1,412,878	-		DZA65_RS06800	0.80	+0.1
1,412,911	+		DZA65_RS06800	0.85	-2.1
1,412,912	-		DZA65_RS06800	0.85	+0.4
1,413,000	+				-2.9
1,413,000	+				-0.9
1,413,000	+				-0.1
1,413,000	+				-1.1
1,413,000	+				+0.6
1,413,000	+				+1.2
1,413,001	-				-1.7
1,413,001	-				+0.1
1,413,001	-				+0.4
1,413,001	-				+0.4
1,413,001	-				-1.1
1,413,001	-				-2.3
1,413,001	-				-0.1
1,413,001	-				+1.1
1,413,001	-				+0.1
1,413,001	-				-0.1
1,413,007	-				-0.1
1,413,023	-				-0.7
1,413,112	+				+0.9
1,413,112	+				-0.1
1,413,112	+				+2.8
1,413,112	+				-0.4
1,413,113	-				+1.8
1,413,113	-				-1.5
1,413,231	+		DZA65_RS06805	0.21	-1.4