Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06290

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,308,955	-				-0.8
1,308,955	-				+3.0
1,308,955	-				-3.1
1,308,994	-				-0.2
1,309,001	+				+1.7
1,309,002	-				-1.3
1,309,002	-				+2.3
1,309,002	-				+2.3
1,309,002	-				+3.9
1,309,006	+				+0.6
1,309,006	+				-2.1
1,309,036	+				-1.1
1,309,052	-				-0.2
1,309,082	+				-1.1
1,309,083	-				+3.3
1,309,083	-				-0.1
1,309,083	-				+0.5
1,309,094	-				+2.9
1,309,138	+				+0.9
1,309,156	-				+2.4
1,309,172	+				-0.6
1,309,173	-				+1.2
1,309,192	+				-1.4
1,309,193	-				-0.4
1,309,240	+				-0.4
1,309,240	+				-0.1
1,309,241	-				+0.6
1,309,241	-				-3.2
1,309,256	+				+0.9
1,309,256	+				+1.9
1,309,256	+				+0.1
1,309,256	+				+0.8
1,309,257	-				+0.9
1,309,257	-				-0.3
1,309,257	-				+0.4
1,309,257	-				-1.0
1,309,257	-				+0.9
1,309,257	-				-1.1
1,309,257	-				-1.5
1,309,257	-				+1.7
1,309,258	+				+0.9
1,309,259	-				+1.6
1,309,259	-				+0.5
1,309,259	-				-1.2
1,309,259	-				-2.2
1,309,259	-				-1.1
1,309,267	+				-1.8
1,309,267	+				-1.4
1,309,268	-				-2.1
1,309,316	-				-1.2
1,309,339	-				+1.2
1,309,339	-				-0.5
1,309,426	-				-2.4
1,309,519	+				-1.6
1,309,524	+				-2.4
1,309,524	+				-2.2
1,309,525	-				-1.1
1,309,525	-				+0.5
1,309,525	-				-2.5
1,309,525	-				+1.1
1,309,525	-				+0.4
1,309,528	+				+0.4
1,309,528	+				+0.4
1,309,528	+				-1.5
1,309,528	+				-0.1
1,309,528	+				+1.2
1,309,528	+				-1.6
1,309,529	-				+0.2
1,309,529	-				+0.9
1,309,530	+				+0.9
1,309,530	+				-1.6
1,309,530	+				+0.9
1,309,601	-				-1.9
1,309,625	+				+0.8
1,309,633	-				+1.5
1,309,637	+				+0.9
1,309,750	+				-1.2
1,309,751	-				+0.0
1,309,769	+				-0.6
1,309,851	+				+2.3
1,309,851	+				-0.6
1,309,852	-				+2.7
1,309,852	-				+1.0
1,309,852	-				+0.7
1,309,871	+				-2.2
1,309,872	-				-2.4
1,309,881	+				-1.0
1,309,893	+				-2.2
1,309,893	+				-0.8
1,309,894	-				+2.8
1,309,894	-				-0.0
1,309,894	-				-0.0
1,309,916	+				-3.0
1,309,924	+				-2.2
1,309,926	+				-1.9
1,309,926	+				-1.0
1,309,926	+				-0.6
1,309,926	+				-1.6
1,309,926	+				+1.2
1,309,927	-				-0.9
1,309,927	-				+2.8
1,309,927	-				-1.4
1,309,927	-				-0.0
1,309,935	-				-0.0
1,309,950	-				-1.0
1,310,278	+		DZA65_RS06290	0.24	-1.0
1,310,278	+		DZA65_RS06290	0.24	-0.3
1,310,279	-		DZA65_RS06290	0.24	-0.6
1,310,279	-		DZA65_RS06290	0.24	-2.2
1,310,458	+		DZA65_RS06290	0.38	+0.8
1,310,460	+		DZA65_RS06290	0.38	+0.6
1,310,461	-		DZA65_RS06290	0.38	-0.7
1,310,461	-		DZA65_RS06290	0.38	+1.0
1,310,505	+		DZA65_RS06290	0.41	-1.0
1,310,505	+		DZA65_RS06290	0.41	-2.2
1,310,505	+		DZA65_RS06290	0.41	+1.0
1,310,505	+		DZA65_RS06290	0.41	-1.7
1,310,505	+		DZA65_RS06290	0.41	-0.6
1,310,505	+		DZA65_RS06290	0.41	+2.0
1,310,505	+		DZA65_RS06290	0.41	+1.1
1,310,506	-		DZA65_RS06290	0.41	+1.0
1,310,506	-		DZA65_RS06290	0.41	-0.2
1,310,506	-		DZA65_RS06290	0.41	+1.6
1,310,508	+		DZA65_RS06290	0.42	+2.0
1,310,508	+		DZA65_RS06290	0.42	-0.6
1,310,508	+		DZA65_RS06290	0.42	+1.0
1,310,508	+		DZA65_RS06290	0.42	-3.0
1,310,508	+		DZA65_RS06290	0.42	-0.4
1,310,508	+		DZA65_RS06290	0.42	+1.0
1,310,508	+		DZA65_RS06290	0.42	+3.1
1,310,508	+		DZA65_RS06290	0.42	-0.3
1,310,509	-		DZA65_RS06290	0.42	+2.0
1,310,509	-		DZA65_RS06290	0.42	-1.5
1,310,509	-		DZA65_RS06290	0.42	-0.4
1,310,509	-		DZA65_RS06290	0.42	-2.0
1,310,509	-		DZA65_RS06290	0.42	-1.4
1,310,509	-		DZA65_RS06290	0.42	-0.0
1,310,509	-		DZA65_RS06290	0.42	+0.2
1,310,509	-		DZA65_RS06290	0.42	+0.4
1,310,509	-		DZA65_RS06290	0.42	-0.3
1,310,509	-		DZA65_RS06290	0.42	-0.8
1,310,509	-		DZA65_RS06290	0.42	-1.0
1,310,509	-		DZA65_RS06290	0.42	+2.5
1,310,509	-		DZA65_RS06290	0.42	+2.8
1,310,636	+		DZA65_RS06290	0.51	+0.4
1,310,637	-		DZA65_RS06290	0.51	+1.5
1,310,637	-		DZA65_RS06290	0.51	+1.4
1,310,653	+		DZA65_RS06290	0.53	-0.5
1,310,653	+		DZA65_RS06290	0.53	-2.4
1,310,654	-		DZA65_RS06290	0.53	-2.2
1,310,654	-		DZA65_RS06290	0.53	-0.0
1,310,654	-		DZA65_RS06290	0.53	+0.2
1,310,722	+		DZA65_RS06290	0.58	-0.6
1,310,723	-		DZA65_RS06290	0.58	+1.4
1,310,817	+		DZA65_RS06290	0.65	-1.3
1,310,817	+		DZA65_RS06290	0.65	-0.0
1,310,817	+				-0.6
1,310,817	+		DZA65_RS06290	0.65	+3.0
1,310,818	-		DZA65_RS06290	0.65	+1.0
1,310,818	-		DZA65_RS06290	0.65	-1.6
1,310,818	-				-1.0
1,310,854	+		DZA65_RS06290	0.68	+1.4
1,310,854	+		DZA65_RS06290	0.68	-1.0
1,310,855	-		DZA65_RS06290	0.68	+0.5
1,310,855	-		DZA65_RS06290	0.68	-0.4
1,310,855	-		DZA65_RS06290	0.68	+0.6
1,311,177	-				-0.6
1,311,177	-				+0.4
1,311,177	-				-2.7
1,311,274	+				-0.5
1,311,274	+				-2.4
1,311,275	-				+0.5
1,311,275	-				-0.9
1,311,282	-				+2.2
1,311,292	-				+3.2
1,311,292	-				-1.6
1,311,302	-				-0.6
1,311,309	+				+1.0
1,311,310	-				-1.4
1,311,310	-				-1.0
1,311,310	-				-1.4
1,311,340	+				+1.0
1,311,341	-				+0.4
1,311,341	-				-3.0
1,311,341	-				-0.4
1,311,341	-				+1.2
1,311,344	+				-0.6
1,311,344	+				-0.4
1,311,345	-				+1.0
1,311,393	+				-1.0
1,311,393	+				-1.4
1,311,393	+				+0.5
1,311,393	+				+0.3
1,311,393	+				-0.0
1,311,394	-				-0.0
1,311,394	-				-0.0
1,311,394	-				-0.6
1,311,394	-				-0.6
1,311,420	-				-1.0
1,311,456	+				+0.6
1,311,456	+				+1.0
1,311,457	-				+0.1
1,311,457	-				-1.6
1,311,686	+		DZA65_RS06295	0.18	-0.9
1,311,686	+		DZA65_RS06295	0.18	-1.4
1,311,687	-		DZA65_RS06295	0.18	-0.8
1,311,788	+		DZA65_RS06295	0.24	+0.7
1,311,807	+		DZA65_RS06295	0.25	-1.6
1,311,808	-		DZA65_RS06295	0.25	+2.5
1,311,808	-		DZA65_RS06295	0.25	-0.6
1,311,808	-		DZA65_RS06295	0.25	+0.5
1,311,808	-		DZA65_RS06295	0.25	-0.2
1,311,876	+		DZA65_RS06295	0.29	-0.0
1,311,877	-		DZA65_RS06295	0.30	+1.6
1,311,902	+		DZA65_RS06295	0.31	-1.6
1,311,902	+		DZA65_RS06295	0.31	-0.6
1,311,903	-		DZA65_RS06295	0.31	+0.7
1,311,903	-		DZA65_RS06295	0.31	+0.4
1,311,904	+		DZA65_RS06295	0.31	-1.6
1,311,904	+		DZA65_RS06295	0.31	-1.0
1,311,904	+		DZA65_RS06295	0.31	+1.2
1,311,905	-		DZA65_RS06295	0.31	+1.0
1,312,268	+		DZA65_RS06295	0.53	-1.0
1,312,268	+		DZA65_RS06295	0.53	-2.4
1,312,268	+		DZA65_RS06295	0.53	-0.6
1,312,268	+		DZA65_RS06295	0.53	-0.6
1,312,269	-		DZA65_RS06295	0.53	-2.4
1,312,269	-		DZA65_RS06295	0.53	-0.4
1,312,269	-		DZA65_RS06295	0.53	-0.3
1,312,269	-		DZA65_RS06295	0.53	-1.6