Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06225 and DZA65_RS06230 are separated by 123 nucleotides DZA65_RS06230 and DZA65_RS06235 are separated by 98 nucleotides DZA65_RS06235 and DZA65_RS06240 overlap by 1 nucleotides
DZA65_RS06225: DZA65_RS06225 - copper-exporting P-type ATPase CopA, at 1,289,060 to 1,291,876
_RS06225
DZA65_RS06230: DZA65_RS06230 - Cu(I)-responsive transcriptional regulator, at 1,292,000 to 1,292,422
_RS06230
DZA65_RS06235: DZA65_RS06235 - NfeD family protein, at 1,292,521 to 1,292,973
_RS06235
DZA65_RS06240: DZA65_RS06240 - SPFH/Band 7/PHB domain protein, at 1,292,973 to 1,293,887
_RS06240
Position (kb) 1291
1292
1293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1291.286 kb on + strand, within DZA65_RS06225 at 1291.286 kb on + strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.287 kb on - strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.330 kb on + strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.331 kb on - strand, within DZA65_RS06225 at 1291.548 kb on + strand at 1291.549 kb on - strand, within DZA65_RS06225 at 1291.549 kb on - strand, within DZA65_RS06225 at 1291.571 kb on - strand, within DZA65_RS06225 at 1291.678 kb on + strand at 1291.758 kb on + strand at 1291.862 kb on + strand at 1291.863 kb on - strand at 1291.863 kb on - strand at 1291.863 kb on - strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.876 kb on + strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.877 kb on - strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.879 kb on + strand at 1291.880 kb on - strand at 1291.880 kb on - strand at 1291.880 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.883 kb on - strand at 1291.940 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.946 kb on + strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.947 kb on - strand at 1291.953 kb on + strand at 1292.005 kb on + strand at 1292.006 kb on - strand at 1292.057 kb on + strand, within DZA65_RS06230 at 1292.057 kb on + strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.058 kb on - strand, within DZA65_RS06230 at 1292.114 kb on + strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.115 kb on - strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand, within DZA65_RS06230 at 1292.128 kb on + strand at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.129 kb on - strand, within DZA65_RS06230 at 1292.293 kb on + strand, within DZA65_RS06230 at 1292.293 kb on + strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.294 kb on - strand, within DZA65_RS06230 at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.446 kb on + strand at 1292.465 kb on + strand at 1292.465 kb on + strand at 1292.465 kb on + strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.466 kb on - strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.494 kb on + strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.495 kb on - strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.547 kb on + strand at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.673 kb on + strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.674 kb on - strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.676 kb on + strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.677 kb on - strand, within DZA65_RS06235 at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1292.974 kb on + strand at 1293.112 kb on + strand, within DZA65_RS06240 at 1293.112 kb on + strand, within DZA65_RS06240 at 1293.113 kb on - strand, within DZA65_RS06240 at 1293.113 kb on - strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.130 kb on + strand, within DZA65_RS06240 at 1293.131 kb on - strand, within DZA65_RS06240 at 1293.131 kb on - strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.146 kb on + strand, within DZA65_RS06240 at 1293.332 kb on + strand, within DZA65_RS06240 at 1293.333 kb on - strand, within DZA65_RS06240
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 1,291,286 + DZA65_RS06225 0.79 -2.9 1,291,286 + DZA65_RS06225 0.79 -1.9 1,291,287 - DZA65_RS06225 0.79 +1.4 1,291,287 - DZA65_RS06225 0.79 -2.1 1,291,287 - DZA65_RS06225 0.79 -1.9 1,291,287 - DZA65_RS06225 0.79 +1.7 1,291,287 - DZA65_RS06225 0.79 -1.6 1,291,330 + DZA65_RS06225 0.81 -1.6 1,291,330 + DZA65_RS06225 0.81 -1.1 1,291,330 + DZA65_RS06225 0.81 -0.8 1,291,330 + DZA65_RS06225 0.81 -1.2 1,291,330 + DZA65_RS06225 0.81 -2.2 1,291,330 + DZA65_RS06225 0.81 +0.9 1,291,331 - DZA65_RS06225 0.81 -0.9 1,291,331 - DZA65_RS06225 0.81 -1.1 1,291,331 - DZA65_RS06225 0.81 +0.1 1,291,331 - DZA65_RS06225 0.81 +3.3 1,291,331 - DZA65_RS06225 0.81 -1.9 1,291,331 - DZA65_RS06225 0.81 +2.3 1,291,331 - DZA65_RS06225 0.81 +0.9 1,291,548 + -1.1 1,291,549 - DZA65_RS06225 0.88 -0.1 1,291,549 - DZA65_RS06225 0.88 +0.6 1,291,571 - DZA65_RS06225 0.89 -2.7 1,291,678 + -0.1 1,291,758 + -1.3 1,291,862 + +1.3 1,291,863 - -3.2 1,291,863 - -0.6 1,291,863 - +1.9 1,291,876 + -0.1 1,291,876 + -2.2 1,291,876 + -1.4 1,291,876 + +0.9 1,291,876 + -2.4 1,291,876 + +0.9 1,291,876 + -0.2 1,291,876 + -1.9 1,291,877 - +0.3 1,291,877 - +0.9 1,291,877 - +2.5 1,291,877 - +0.4 1,291,877 - -1.1 1,291,879 + -1.6 1,291,879 + -0.1 1,291,879 + +0.9 1,291,879 + -0.3 1,291,879 + -0.6 1,291,879 + -0.1 1,291,879 + +1.5 1,291,880 - -0.4 1,291,880 - +2.1 1,291,880 - +3.2 1,291,883 - -1.2 1,291,883 - +0.0 1,291,883 - +1.1 1,291,883 - -2.4 1,291,940 + +1.1 1,291,946 + +0.3 1,291,946 + -1.9 1,291,946 + +1.1 1,291,946 + -2.9 1,291,946 + -1.6 1,291,946 + -4.0 1,291,946 + -0.1 1,291,947 - -1.2 1,291,947 - +1.8 1,291,947 - +2.4 1,291,947 - -1.1 1,291,953 + +1.7 1,292,005 + -2.4 1,292,006 - -0.6 1,292,057 + DZA65_RS06230 0.13 +0.6 1,292,057 + DZA65_RS06230 0.13 -2.0 1,292,058 - DZA65_RS06230 0.14 +0.7 1,292,058 - DZA65_RS06230 0.14 -0.6 1,292,058 - DZA65_RS06230 0.14 -3.3 1,292,114 + DZA65_RS06230 0.27 +0.5 1,292,115 - DZA65_RS06230 0.27 +1.3 1,292,115 - DZA65_RS06230 0.27 +1.8 1,292,115 - DZA65_RS06230 0.27 -1.4 1,292,128 + DZA65_RS06230 0.30 -2.5 1,292,128 + DZA65_RS06230 0.30 -0.1 1,292,128 + DZA65_RS06230 0.30 +1.7 1,292,128 + -1.1 1,292,129 - DZA65_RS06230 0.30 -2.4 1,292,129 - DZA65_RS06230 0.30 +0.1 1,292,129 - DZA65_RS06230 0.30 -2.2 1,292,293 + DZA65_RS06230 0.69 -0.1 1,292,293 + DZA65_RS06230 0.69 +0.4 1,292,294 - DZA65_RS06230 0.70 -2.5 1,292,294 - DZA65_RS06230 0.70 -2.5 1,292,294 - DZA65_RS06230 0.70 -1.1 1,292,294 - DZA65_RS06230 0.70 -2.2 1,292,446 + -0.6 1,292,446 + -0.1 1,292,446 + +0.7 1,292,446 + -1.1 1,292,446 + -1.4 1,292,465 + -0.6 1,292,465 + -1.9 1,292,465 + -0.1 1,292,466 - -0.1 1,292,466 - -0.1 1,292,466 - -0.1 1,292,466 - +1.2 1,292,494 + +0.9 1,292,494 + +2.8 1,292,494 + +2.4 1,292,494 + -0.1 1,292,494 + -1.6 1,292,494 + -0.5 1,292,495 - +2.2 1,292,495 - -0.1 1,292,495 - -0.1 1,292,495 - -1.4 1,292,547 + -3.1 1,292,547 + -1.9 1,292,547 + -2.5 1,292,547 + -0.1 1,292,673 + DZA65_RS06235 0.34 -0.1 1,292,673 + DZA65_RS06235 0.34 +1.9 1,292,673 + DZA65_RS06235 0.34 -1.1 1,292,673 + DZA65_RS06235 0.34 +1.3 1,292,673 + DZA65_RS06235 0.34 -0.1 1,292,673 + DZA65_RS06235 0.34 -2.1 1,292,674 - DZA65_RS06235 0.34 -0.3 1,292,674 - DZA65_RS06235 0.34 +0.9 1,292,674 - DZA65_RS06235 0.34 -2.1 1,292,674 - DZA65_RS06235 0.34 +0.1 1,292,674 - DZA65_RS06235 0.34 +1.0 1,292,674 - DZA65_RS06235 0.34 -3.4 1,292,674 - DZA65_RS06235 0.34 -1.9 1,292,676 + DZA65_RS06235 0.34 +0.3 1,292,676 + +1.9 1,292,676 + DZA65_RS06235 0.34 -0.5 1,292,676 + DZA65_RS06235 0.34 -1.1 1,292,676 + DZA65_RS06235 0.34 -1.1 1,292,676 + DZA65_RS06235 0.34 +3.4 1,292,676 + DZA65_RS06235 0.34 +0.9 1,292,677 - DZA65_RS06235 0.34 -0.1 1,292,677 - DZA65_RS06235 0.34 +0.1 1,292,677 - DZA65_RS06235 0.34 +1.1 1,292,677 - DZA65_RS06235 0.34 +1.7 1,292,677 - DZA65_RS06235 0.34 -1.6 1,292,677 - DZA65_RS06235 0.34 +4.0 1,292,677 - DZA65_RS06235 0.34 +0.9 1,292,677 - DZA65_RS06235 0.34 +0.6 1,292,677 - DZA65_RS06235 0.34 +0.9 1,292,677 - DZA65_RS06235 0.34 +0.4 1,292,974 + -1.4 1,292,974 + +0.1 1,292,974 + -1.2 1,292,974 + +2.0 1,292,974 + -1.9 1,292,974 + -0.1 1,293,112 + DZA65_RS06240 0.15 -0.1 1,293,112 + DZA65_RS06240 0.15 -0.6 1,293,113 - DZA65_RS06240 0.15 -3.1 1,293,113 - DZA65_RS06240 0.15 +0.8 1,293,130 + DZA65_RS06240 0.17 +3.8 1,293,130 + DZA65_RS06240 0.17 +0.1 1,293,130 + DZA65_RS06240 0.17 -1.1 1,293,131 - DZA65_RS06240 0.17 -0.2 1,293,131 - DZA65_RS06240 0.17 -0.5 1,293,146 + DZA65_RS06240 0.19 -1.6 1,293,146 + DZA65_RS06240 0.19 -2.1 1,293,146 + DZA65_RS06240 0.19 -2.2 1,293,332 + DZA65_RS06240 0.39 -1.4 1,293,333 - DZA65_RS06240 0.39 +2.0
Or see this region's nucleotide sequence