Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06070

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,253,844	+				-1.7
1,253,845	-		DZA65_RS06060	0.85	-1.7
1,253,937	+		DZA65_RS06060	0.90	+1.7
1,253,937	+				-1.9
1,253,937	+		DZA65_RS06060	0.90	+1.9
1,253,937	+		DZA65_RS06060	0.90	-0.1
1,253,937	+		DZA65_RS06060	0.90	-0.3
1,253,937	+		DZA65_RS06060	0.90	-0.9
1,253,937	+		DZA65_RS06060	0.90	-0.1
1,253,938	-		DZA65_RS06060	0.90	-0.1
1,253,938	-		DZA65_RS06060	0.90	+1.9
1,253,938	-		DZA65_RS06060	0.90	+0.0
1,253,938	-		DZA65_RS06060	0.90	+1.8
1,253,938	-		DZA65_RS06060	0.90	+1.5
1,253,955	+				-1.9
1,253,956	-				-0.9
1,253,977	-				+0.9
1,254,028	+				-0.5
1,254,029	-				-1.7
1,254,029	-				+0.9
1,254,029	-				-0.7
1,254,032	-				+1.9
1,254,040	+				-1.4
1,254,040	+				+0.3
1,254,040	+				+0.9
1,254,040	+				-0.8
1,254,041	-				+1.1
1,254,041	-				+1.6
1,254,104	+				-1.7
1,254,150	+				+0.2
1,254,150	+				+0.6
1,254,150	+				-1.4
1,254,150	+				+1.0
1,254,150	+				-0.1
1,254,151	-				-1.7
1,254,151	-				+0.9
1,254,151	-				-1.1
1,254,164	+				+1.9
1,254,164	+				+2.5
1,254,255	+				-0.5
1,254,255	+				+0.9
1,254,255	+				-0.5
1,254,256	-				-3.4
1,254,256	-				-0.1
1,254,256	-				-0.1
1,254,262	+				-2.1
1,254,262	+				+0.4
1,254,262	+				-1.2
1,254,262	+				+0.4
1,254,263	-				-0.1
1,254,263	-				-1.8
1,254,263	-				-1.8
1,254,281	-				-2.8
1,254,281	-				-0.6
1,254,357	+				-2.1
1,254,358	-				-1.7
1,254,358	-				+0.6
1,254,358	-				+1.4
1,254,358	-				-1.1
1,254,358	-				-0.1
1,254,363	+				-1.1
1,254,363	+				-1.5
1,254,363	+				-0.7
1,254,363	+				+0.5
1,254,364	-				+2.4
1,254,394	+				-2.1
1,254,394	+				-0.7
1,254,394	+				-1.2
1,254,395	-				-0.9
1,254,395	-				-0.1
1,254,395	-				+1.2
1,254,395	-				-1.7
1,254,395	-				+2.2
1,254,395	-				-0.4
1,254,398	+				-0.5
1,254,398	+				-1.5
1,254,398	+				-1.4
1,254,398	+				-3.8
1,254,398	+				-1.4
1,254,398	+				+1.9
1,254,398	+				-0.9
1,254,398	+				-1.7
1,254,398	+				-3.3
1,254,398	+				-3.7
1,254,398	+				-1.6
1,254,398	+				-0.3
1,254,398	+				-3.0
1,254,398	+				-1.1
1,254,398	+				+1.3
1,254,398	+				-1.2
1,254,399	-				+2.2
1,254,399	-				-1.7
1,254,399	-				+0.5
1,254,399	-				-0.2
1,254,399	-				-1.5
1,254,399	-				-1.1
1,254,399	-				+3.0
1,254,399	-				+1.1
1,254,399	-				-0.7
1,254,399	-				+1.1
1,254,399	-				+1.4
1,254,399	-				-0.8
1,254,399	-				-0.1
1,254,402	+				-2.8
1,254,403	-				-0.7
1,254,427	-				-1.7
1,254,427	-				+2.9
1,254,434	+				-1.9
1,254,435	-				+2.2
1,254,435	-				+3.7
1,254,435	-				-1.4
1,254,435	-				+1.6
1,254,439	-				-1.4
1,254,462	-		DZA65_RS06065	0.14	-2.5
1,254,462	-		DZA65_RS06065	0.14	-0.7
1,254,462	-		DZA65_RS06065	0.14	-1.9
1,254,462	-		DZA65_RS06065	0.14	+1.1
1,254,462	-		DZA65_RS06065	0.14	-1.1
1,254,462	-		DZA65_RS06065	0.14	+0.9
1,254,550	+		DZA65_RS06065	0.40	-1.1
1,254,550	+		DZA65_RS06065	0.40	-0.1
1,254,550	+		DZA65_RS06065	0.40	-2.8
1,254,550	+		DZA65_RS06065	0.40	-2.5
1,254,551	-		DZA65_RS06065	0.40	-2.8
1,254,565	+		DZA65_RS06065	0.44	-1.7
1,254,565	+		DZA65_RS06065	0.44	-2.2
1,254,574	-		DZA65_RS06065	0.47	+0.9
1,254,648	+		DZA65_RS06065	0.69	+0.3
1,254,658	+		DZA65_RS06065	0.72	-1.7
1,254,659	-		DZA65_RS06065	0.72	+0.2
1,254,667	-		DZA65_RS06065	0.74	+1.5
1,254,749	+				-0.6
1,254,749	+				-2.2
1,254,750	-				-1.7
1,254,750	-				+2.2
1,254,750	-				+1.3
1,254,750	-				+1.4
1,254,752	-				+1.6
1,254,758	+				-1.1
1,254,758	+				-0.7
1,254,758	+				-0.8
1,254,758	+				-3.0
1,254,759	-				-1.1
1,254,768	-				+0.1
1,254,774	-				+0.3
1,254,774	-				+0.9
1,254,776	+				-0.9
1,254,776	+				+1.9
1,254,776	+				+1.2
1,254,776	+				+1.0
1,254,776	+				-1.8
1,254,776	+				-0.5
1,254,776	+				-0.7
1,254,776	+				-0.3
1,254,776	+				+0.6
1,254,776	+				-0.1
1,254,776	+				-1.4
1,254,776	+				+0.6
1,254,776	+				+1.3
1,254,777	-				-2.8
1,254,777	-				-1.1
1,254,777	-				+0.1
1,254,777	-				+0.4
1,254,777	-				-0.1
1,254,780	+				+0.7
1,254,781	-				+0.5
1,254,818	+				+0.0
1,254,819	-				+3.6
1,254,819	-				-3.2
1,254,819	-				+0.7
1,254,824	+				+1.3
1,255,012	-		DZA65_RS06070	0.17	+0.1
1,255,012	-		DZA65_RS06070	0.17	-0.7
1,255,051	+		DZA65_RS06070	0.20	+0.4
1,255,051	+		DZA65_RS06070	0.20	-2.5
1,255,051	+		DZA65_RS06070	0.20	-0.4
1,255,052	-		DZA65_RS06070	0.20	-2.4
1,255,052	-		DZA65_RS06070	0.20	+0.5
1,255,058	-		DZA65_RS06070	0.20	-1.1
1,255,077	-		DZA65_RS06070	0.22	-0.4
1,255,077	-		DZA65_RS06070	0.22	-1.4
1,255,129	-		DZA65_RS06070	0.26	-0.5
1,255,129	-		DZA65_RS06070	0.26	-3.1
1,255,147	-		DZA65_RS06070	0.27	-1.9
1,255,147	-		DZA65_RS06070	0.27	-0.9
1,255,153	+		DZA65_RS06070	0.28	+1.4
1,255,153	+		DZA65_RS06070	0.28	-0.4
1,255,153	+		DZA65_RS06070	0.28	-1.0
1,255,154	-		DZA65_RS06070	0.28	+0.5
1,255,161	+		DZA65_RS06070	0.28	-3.2
1,255,194	+		DZA65_RS06070	0.31	-0.6
1,255,194	+		DZA65_RS06070	0.31	+2.0
1,255,195	-		DZA65_RS06070	0.31	+3.3
1,255,195	-		DZA65_RS06070	0.31	-1.4
1,255,233	+		DZA65_RS06070	0.34	+0.2
1,255,233	+		DZA65_RS06070	0.34	-2.1
1,255,285	+		DZA65_RS06070	0.38	+0.9
1,255,285	+		DZA65_RS06070	0.38	-0.6
1,255,285	+		DZA65_RS06070	0.38	-1.9
1,255,285	+		DZA65_RS06070	0.38	-1.9
1,255,285	+		DZA65_RS06070	0.38	+0.0
1,255,286	-		DZA65_RS06070	0.38	+1.7
1,255,286	-		DZA65_RS06070	0.38	+3.6
1,255,286	-		DZA65_RS06070	0.38	+0.6
1,255,322	-		DZA65_RS06070	0.41	+0.6
1,255,364	+		DZA65_RS06070	0.44	-1.6
1,255,364	+		DZA65_RS06070	0.44	+0.7
1,255,364	+		DZA65_RS06070	0.44	-2.0
1,255,364	+		DZA65_RS06070	0.44	+0.2
1,255,364	+		DZA65_RS06070	0.44	-0.2
1,255,371	+		DZA65_RS06070	0.44	-0.8
1,255,371	+		DZA65_RS06070	0.44	+0.5
1,255,470	-		DZA65_RS06070	0.52	+1.5
1,255,492	+		DZA65_RS06070	0.54	-0.6
1,255,492	+		DZA65_RS06070	0.54	+0.7
1,255,493	-		DZA65_RS06070	0.54	+0.7
1,255,493	-		DZA65_RS06070	0.54	-1.4
1,255,493	-		DZA65_RS06070	0.54	-0.1
1,255,493	-		DZA65_RS06070	0.54	-0.1
1,255,493	-		DZA65_RS06070	0.54	+1.7
1,255,662	+		DZA65_RS06070	0.67	+0.5
1,255,662	+		DZA65_RS06070	0.67	-0.3
1,255,663	-		DZA65_RS06070	0.67	+0.0
1,255,663	-		DZA65_RS06070	0.67	+0.9
1,255,769	+		DZA65_RS06070	0.75	-0.6
1,255,834	-		DZA65_RS06070	0.80	-0.6
1,255,838	+		DZA65_RS06070	0.81	-0.6
1,255,838	+		DZA65_RS06070	0.81	+0.2
1,255,838	+		DZA65_RS06070	0.81	+0.9
1,255,838	+		DZA65_RS06070	0.81	-0.1
1,255,838	+		DZA65_RS06070	0.81	+1.8
1,255,838	+		DZA65_RS06070	0.81	+0.9
1,255,838	+		DZA65_RS06070	0.81	-2.7
1,255,838	+		DZA65_RS06070	0.81	+1.4
1,255,838	+		DZA65_RS06070	0.81	+0.9
1,255,839	-		DZA65_RS06070	0.81	+2.4
1,255,839	-		DZA65_RS06070	0.81	+2.4
1,255,839	-		DZA65_RS06070	0.81	-0.6
1,255,839	-		DZA65_RS06070	0.81	+2.1
1,255,839	-		DZA65_RS06070	0.81	+0.7
1,255,839	-		DZA65_RS06070	0.81	-1.4
1,255,839	-		DZA65_RS06070	0.81	+1.3
1,255,839	-		DZA65_RS06070	0.81	+1.3
1,255,908	+		DZA65_RS06070	0.86	-1.8
1,255,909	-		DZA65_RS06070	0.86	-2.3
1,255,928	+		DZA65_RS06070	0.88	+1.9
1,255,929	-		DZA65_RS06070	0.88	+0.1
1,255,958	+		DZA65_RS06070	0.90	+0.6
1,255,958	+		DZA65_RS06070	0.90	+1.3
1,255,958	+		DZA65_RS06070	0.90	+1.5
1,255,958	+		DZA65_RS06070	0.90	-1.9
1,255,958	+		DZA65_RS06070	0.90	+1.4
1,255,958	+		DZA65_RS06070	0.90	+1.1
1,255,959	-				-0.1
1,255,959	-				-0.1
1,255,959	-				-0.1
1,255,959	-				+1.2
1,255,959	-				-1.1
1,255,959	-				+0.6
1,256,001	+				-0.3
1,256,001	+				+0.4
1,256,001	+				-0.2
1,256,001	+				+0.9
1,256,001	+				-0.2
1,256,002	-				-2.4
1,256,002	-				+0.7
1,256,002	-				-0.1
1,256,002	-				-1.6
1,256,077	+				-1.1
1,256,087	-				-1.0
1,256,094	+				-0.7
1,256,102	+				-0.1
1,256,102	+				-1.7
1,256,103	-				-2.7
1,256,123	+				+0.2
1,256,181	+				-0.1
1,256,199	+				+0.7
1,256,265	+				+0.1
1,256,265	+				-0.1
1,256,265	+				+1.6
1,256,265	+				+0.9
1,256,265	+				+3.1
1,256,265	+				+1.1
1,256,265	+				-0.1
1,256,265	+				+1.5
1,256,265	+				-1.1
1,256,265	+				+1.3
1,256,265	+				-2.1
1,256,266	-				+2.7
1,256,266	-				-0.7
1,256,266	-				+0.3
1,256,266	-				+1.6
1,256,266	-				+0.9
1,256,266	-				+1.4
1,256,322	+		DZA65_RS06075	0.14	-2.1
1,256,323	-		DZA65_RS06075	0.14	+1.6
1,256,323	-		DZA65_RS06075	0.14	+0.9
1,256,458	+		DZA65_RS06075	0.30	-1.9
1,256,458	+		DZA65_RS06075	0.30	+1.4
1,256,458	+		DZA65_RS06075	0.30	-2.9
1,256,458	+		DZA65_RS06075	0.30	+2.1
1,256,459	-		DZA65_RS06075	0.30	-2.8
1,256,459	-		DZA65_RS06075	0.30	-1.1
1,256,459	-		DZA65_RS06075	0.30	+1.9
1,256,459	-		DZA65_RS06075	0.30	+0.3
1,256,459	-		DZA65_RS06075	0.30	+1.5
1,256,459	-		DZA65_RS06075	0.30	+0.7
1,256,459	-		DZA65_RS06075	0.30	-0.7
1,256,459	-		DZA65_RS06075	0.30	-0.7
1,256,460	+		DZA65_RS06075	0.30	+0.1
1,256,472	+		DZA65_RS06075	0.32	-0.4
1,256,472	+		DZA65_RS06075	0.32	-0.7
1,256,473	-		DZA65_RS06075	0.32	-1.1
1,256,500	+		DZA65_RS06075	0.35	+2.0
1,256,501	-		DZA65_RS06075	0.35	-2.4
1,256,522	+		DZA65_RS06075	0.38	+2.6
1,256,522	+		DZA65_RS06075	0.38	+1.2
1,256,522	+		DZA65_RS06075	0.38	+1.8
1,256,522	+		DZA65_RS06075	0.38	-1.4
1,256,522	+		DZA65_RS06075	0.38	+1.7
1,256,522	+		DZA65_RS06075	0.38	+2.0
1,256,522	+		DZA65_RS06075	0.38	-0.2
1,256,522	+		DZA65_RS06075	0.38	+0.5
1,256,523	-		DZA65_RS06075	0.38	+5.0
1,256,523	-		DZA65_RS06075	0.38	-0.7
1,256,523	-		DZA65_RS06075	0.38	+0.9
1,256,523	-		DZA65_RS06075	0.38	-1.7
1,256,523	-		DZA65_RS06075	0.38	-0.7
1,256,523	-		DZA65_RS06075	0.38	+0.9
1,256,523	-		DZA65_RS06075	0.38	+1.1
1,256,523	-		DZA65_RS06075	0.38	+2.1
1,256,583	-		DZA65_RS06075	0.45	+0.7
1,256,606	-		DZA65_RS06075	0.47	-0.5
1,256,606	-		DZA65_RS06075	0.47	-0.6
1,256,752	+		DZA65_RS06075	0.64	+1.3
1,256,752	+		DZA65_RS06075	0.64	+0.0
1,256,752	+		DZA65_RS06075	0.64	-2.1
1,256,752	+		DZA65_RS06075	0.64	-2.5
1,256,753	-		DZA65_RS06075	0.64	+2.3
1,256,755	-		DZA65_RS06075	0.64	-0.7
1,256,835	+		DZA65_RS06075	0.74	+1.8
1,256,835	+		DZA65_RS06075	0.74	+1.9
1,256,836	-		DZA65_RS06075	0.74	-2.1
1,256,836	-		DZA65_RS06075	0.74	+0.3
1,256,836	-		DZA65_RS06075	0.74	-2.9
1,256,839	+		DZA65_RS06075	0.74	+1.2
1,256,839	+		DZA65_RS06075	0.74	+0.1
1,256,840	-		DZA65_RS06075	0.74	+1.1
1,256,840	-		DZA65_RS06075	0.74	+1.3
1,256,840	-		DZA65_RS06075	0.74	+0.9
1,256,874	+		DZA65_RS06075	0.78	+0.1
1,256,874	+		DZA65_RS06075	0.78	+0.3
1,256,874	+		DZA65_RS06075	0.78	+0.9
1,256,874	+		DZA65_RS06075	0.78	+2.2
1,256,875	-		DZA65_RS06075	0.78	-0.7
1,256,875	-		DZA65_RS06075	0.78	+0.5
1,256,960	+		DZA65_RS06075	0.88	-1.1
1,256,960	+		DZA65_RS06075	0.88	+0.2
1,256,960	+		DZA65_RS06075	0.88	+0.2
1,256,961	-		DZA65_RS06075	0.88	-0.1
1,256,961	-		DZA65_RS06075	0.88	+2.3
1,257,026	+				-0.7
1,257,061	+				-1.1
1,257,061	+				+3.3
1,257,061	+				+0.2
1,257,061	+				+0.6
1,257,061	+				+1.1
1,257,062	-				+1.8
1,257,062	-				+0.7
1,257,062	-				+1.5
1,257,062	-				-1.9
1,257,062	-				-0.9
1,257,065	+				-1.1
1,257,065	+				-0.9
1,257,065	+				-0.7
1,257,065	+				-0.4
1,257,066	-				+0.5
1,257,066	-				+0.3
1,257,066	-				+1.1
1,257,066	-				-2.1
1,257,066	-				+1.1
1,257,078	+				-2.2
1,257,079	-				+2.3
1,257,087	+				+1.4
1,257,088	-				+2.0