Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05515

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05505 and DZA65_RS05510 are separated by 148 nucleotidesDZA65_RS05510 and DZA65_RS05515 are separated by 3 nucleotidesDZA65_RS05515 and DZA65_RS05520 are separated by 3 nucleotides DZA65_RS05505: DZA65_RS05505 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,133,281 to 1,134,303 _RS05505 DZA65_RS05510: DZA65_RS05510 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,134,452 to 1,134,907 _RS05510 DZA65_RS05515: DZA65_RS05515 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,134,911 to 1,135,699 _RS05515 DZA65_RS05520: DZA65_RS05520 - lipid-A-disaccharide synthase, at 1,135,703 to 1,136,851 _RS05520 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1134.285 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.336 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.378 kb on + strandat 1134.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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1,134,285 + +0.2
1,134,336 + -0.2
1,134,336 + +2.2
1,134,336 + -3.1
1,134,336 + +2.7
1,134,336 + -0.1
1,134,378 + +0.5
1,134,378 + +1.5
1,134,378 + -0.5
1,134,378 + -0.1
1,134,378 + -1.7
1,134,415 + +0.9

Or see this region's nucleotide sequence