Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03470 and DZA65_RS03475 are separated by 94 nucleotides DZA65_RS03475 and DZA65_RS03480 are separated by 128 nucleotides DZA65_RS03480 and DZA65_RS03485 are separated by 262 nucleotides
DZA65_RS03470: DZA65_RS03470 - membrane protein, at 733,246 to 733,677
_RS03470
DZA65_RS03475: DZA65_RS03475 - flavodoxin FldB, at 733,772 to 734,290
_RS03475
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.594 kb on - strand, within DZA65_RS03470 at 733.675 kb on + strand at 733.675 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.842 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.860 kb on - strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.882 kb on + strand at 733.882 kb on + strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.920 kb on + strand, within DZA65_RS03475 at 733.945 kb on + strand, within DZA65_RS03475 at 734.038 kb on - strand, within DZA65_RS03475 at 734.155 kb on - strand, within DZA65_RS03475 at 734.202 kb on - strand, within DZA65_RS03475 at 734.253 kb on + strand at 734.253 kb on + strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.282 kb on + strand at 734.283 kb on - strand at 734.283 kb on - strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.316 kb on + strand at 734.316 kb on + strand at 734.317 kb on - strand at 734.339 kb on + strand at 734.352 kb on + strand at 734.353 kb on - strand at 734.365 kb on + strand at 734.365 kb on + strand at 734.411 kb on + strand at 734.420 kb on + strand at 734.421 kb on - strand at 734.495 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.546 kb on + strand at 734.547 kb on - strand at 734.547 kb on - strand at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.583 kb on + strand, within DZA65_RS03480 at 734.584 kb on - strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.814 kb on - strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 735.091 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.257 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.626 kb on + strand at 735.692 kb on - strand at 735.720 kb on + strand at 735.720 kb on + strand at 735.744 kb on + strand at 735.744 kb on + strand at 735.745 kb on - strand at 735.745 kb on - strand at 735.762 kb on + strand at 735.763 kb on - strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.867 kb on - strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.876 kb on + strand at 735.939 kb on + strand at 735.940 kb on - strand at 735.950 kb on + strand at 735.951 kb on - strand at 735.951 kb on - strand at 735.964 kb on + strand at 735.964 kb on + strand at 735.965 kb on - strand at 735.965 kb on - strand at 736.081 kb on + strand at 736.584 kb on - strand, within DZA65_RS03485
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 733,496 + DZA65_RS03470 0.58 -1.0 733,496 + DZA65_RS03470 0.58 -1.0 733,496 + DZA65_RS03470 0.58 -2.0 733,496 + DZA65_RS03470 0.58 -1.6 733,496 + DZA65_RS03470 0.58 +0.0 733,497 - DZA65_RS03470 0.58 -1.8 733,497 - DZA65_RS03470 0.58 -1.3 733,497 - DZA65_RS03470 0.58 -2.4 733,497 - DZA65_RS03470 0.58 -0.1 733,497 - DZA65_RS03470 0.58 -1.0 733,593 + DZA65_RS03470 0.80 -1.1 733,593 + DZA65_RS03470 0.80 +0.1 733,594 - DZA65_RS03470 0.81 -2.6 733,675 + +1.8 733,675 + -2.0 733,778 + -0.2 733,778 + -0.3 733,778 + +0.0 733,779 - -1.0 733,779 - -0.6 733,779 - -2.1 733,842 + DZA65_RS03475 0.13 -1.0 733,859 + DZA65_RS03475 0.17 -0.1 733,859 + DZA65_RS03475 0.17 -1.0 733,859 + DZA65_RS03475 0.17 +1.0 733,860 - DZA65_RS03475 0.17 -0.3 733,878 + DZA65_RS03475 0.20 -2.7 733,878 + DZA65_RS03475 0.20 +1.9 733,878 + DZA65_RS03475 0.20 -1.3 733,878 + DZA65_RS03475 0.20 -1.3 733,878 + DZA65_RS03475 0.20 -1.9 733,878 + DZA65_RS03475 0.20 +2.8 733,879 - DZA65_RS03475 0.21 -0.1 733,879 - DZA65_RS03475 0.21 -2.1 733,879 - DZA65_RS03475 0.21 +0.4 733,882 + -1.8 733,882 + DZA65_RS03475 0.21 +0.3 733,883 - DZA65_RS03475 0.21 +0.0 733,883 - DZA65_RS03475 0.21 +2.4 733,920 + DZA65_RS03475 0.29 -0.4 733,945 + DZA65_RS03475 0.33 -1.6 734,038 - DZA65_RS03475 0.51 -2.4 734,155 - DZA65_RS03475 0.74 +0.3 734,202 - DZA65_RS03475 0.83 -1.7 734,253 + +1.2 734,253 + -0.3 734,254 - +0.7 734,254 - -1.0 734,254 - +0.6 734,282 + -1.0 734,283 - +1.5 734,283 - -2.3 734,290 + -1.0 734,290 + +0.4 734,290 + -0.2 734,291 - -2.7 734,291 - -0.6 734,291 - +1.0 734,291 - -1.6 734,291 - +0.0 734,316 + -2.7 734,316 + -2.6 734,317 - -1.0 734,339 + +1.9 734,352 + -2.3 734,353 - -1.0 734,365 + +0.0 734,365 + +0.9 734,411 + +0.9 734,420 + -0.6 734,421 - +2.1 734,495 + +1.8 734,507 + +2.2 734,507 + -0.6 734,507 + +1.6 734,507 + -1.6 734,507 + +1.0 734,508 - -1.2 734,508 - +0.6 734,508 - -0.3 734,508 - +0.4 734,508 - +0.3 734,508 - +1.3 734,508 - -1.3 734,508 - +1.7 734,508 - +0.7 734,508 - -1.3 734,508 - +0.2 734,508 - +2.6 734,546 + +1.4 734,547 - -1.6 734,547 - +0.5 734,578 + DZA65_RS03480 0.12 +0.8 734,578 + DZA65_RS03480 0.12 +0.5 734,578 + DZA65_RS03480 0.12 +0.0 734,578 + DZA65_RS03480 0.12 -1.6 734,578 + DZA65_RS03480 0.12 -0.6 734,578 + DZA65_RS03480 0.12 -2.0 734,578 + DZA65_RS03480 0.12 +1.3 734,579 - DZA65_RS03480 0.12 +3.0 734,579 - DZA65_RS03480 0.12 +0.4 734,579 - DZA65_RS03480 0.12 +1.0 734,583 + DZA65_RS03480 0.12 +1.4 734,584 - DZA65_RS03480 0.12 -1.9 734,585 + DZA65_RS03480 0.13 -0.6 734,585 + DZA65_RS03480 0.13 +1.0 734,585 + DZA65_RS03480 0.13 -1.2 734,585 + DZA65_RS03480 0.13 -0.6 734,586 - DZA65_RS03480 0.13 -2.0 734,586 - DZA65_RS03480 0.13 +0.3 734,586 - DZA65_RS03480 0.13 +0.4 734,604 + DZA65_RS03480 0.14 +0.0 734,604 + DZA65_RS03480 0.14 -0.6 734,606 + DZA65_RS03480 0.14 -2.0 734,606 + DZA65_RS03480 0.14 -0.9 734,606 + DZA65_RS03480 0.14 +1.0 734,814 - DZA65_RS03480 0.30 -3.3 734,921 + DZA65_RS03480 0.38 +1.0 734,921 + DZA65_RS03480 0.38 -0.3 734,922 - DZA65_RS03480 0.38 +0.0 734,922 - DZA65_RS03480 0.38 +1.4 734,934 - DZA65_RS03480 0.39 +0.5 734,934 - DZA65_RS03480 0.39 -1.2 734,948 + DZA65_RS03480 0.40 +2.2 734,948 + DZA65_RS03480 0.40 -0.6 734,948 + DZA65_RS03480 0.40 +1.6 734,949 - DZA65_RS03480 0.40 -1.4 734,949 - DZA65_RS03480 0.40 +0.8 734,949 - DZA65_RS03480 0.40 -1.6 734,949 - DZA65_RS03480 0.40 +0.3 734,949 - DZA65_RS03480 0.40 -1.8 734,960 + DZA65_RS03480 0.41 -2.1 734,960 + DZA65_RS03480 0.41 +0.9 734,960 + DZA65_RS03480 0.41 +0.7 734,960 + DZA65_RS03480 0.41 -0.8 734,960 + DZA65_RS03480 0.41 -0.1 734,960 + DZA65_RS03480 0.41 -1.8 734,961 - DZA65_RS03480 0.41 +0.9 734,961 - DZA65_RS03480 0.41 -0.3 734,961 - DZA65_RS03480 0.41 -0.6 734,961 - DZA65_RS03480 0.41 -0.1 735,091 + DZA65_RS03480 0.51 -0.6 735,101 + DZA65_RS03480 0.51 -1.8 735,101 + DZA65_RS03480 0.51 -1.6 735,101 + DZA65_RS03480 0.51 +0.4 735,102 - DZA65_RS03480 0.52 +0.8 735,102 - DZA65_RS03480 0.52 +1.2 735,257 + DZA65_RS03480 0.63 -0.6 735,392 + DZA65_RS03480 0.73 -0.6 735,392 + DZA65_RS03480 0.73 +1.6 735,392 + DZA65_RS03480 0.73 +4.1 735,393 - DZA65_RS03480 0.73 +3.4 735,393 - DZA65_RS03480 0.73 -3.2 735,415 + DZA65_RS03480 0.75 -1.3 735,415 + DZA65_RS03480 0.75 +1.4 735,415 + DZA65_RS03480 0.75 +0.7 735,415 + DZA65_RS03480 0.75 -0.6 735,432 + DZA65_RS03480 0.76 +0.4 735,432 + DZA65_RS03480 0.76 +0.5 735,433 - DZA65_RS03480 0.76 +0.9 735,433 - DZA65_RS03480 0.76 -2.3 735,433 - DZA65_RS03480 0.76 +0.2 735,620 + -2.1 735,620 + -1.0 735,620 + -0.1 735,620 + -1.3 735,620 + -1.3 735,620 + -2.6 735,620 + -2.3 735,620 + +1.6 735,620 + -2.0 735,620 + -1.6 735,620 + +0.0 735,620 + +1.3 735,620 + -1.6 735,620 + +0.5 735,620 + +0.4 735,620 + -0.6 735,621 - +0.2 735,621 - +3.4 735,621 - +0.9 735,621 - +1.6 735,621 - -2.0 735,621 - +1.7 735,621 - +2.6 735,621 - -2.1 735,621 - -0.6 735,621 - -0.3 735,621 - +2.9 735,621 - +0.4 735,621 - +0.0 735,626 + +2.0 735,692 - -1.6 735,720 + +1.6 735,720 + +0.0 735,744 + +0.8 735,744 + -2.4 735,745 - +2.0 735,745 - +0.4 735,762 + -0.6 735,763 - -0.3 735,782 + -0.8 735,782 + -1.8 735,782 + -0.6 735,782 + +0.9 735,782 + -1.8 735,782 + -1.1 735,782 + -2.5 735,782 + -0.2 735,782 + -1.3 735,782 + +2.0 735,782 + -1.8 735,782 + -0.5 735,782 + -1.0 735,783 - -0.3 735,783 - +0.4 735,783 - +2.6 735,783 - +1.0 735,783 - +1.0 735,783 - +0.0 735,783 - -1.8 735,783 - -1.3 735,783 - +0.6 735,783 - +0.3 735,789 - +1.8 735,789 - +1.0 735,789 - +1.3 735,789 - -1.0 735,867 - +2.4 735,874 + +1.0 735,874 + +2.3 735,874 + +0.3 735,874 + +0.7 735,874 + +0.0 735,875 - +1.0 735,875 - -0.3 735,875 - +0.7 735,876 + -2.3 735,939 + -1.7 735,940 - +0.4 735,950 + -0.6 735,951 - +0.3 735,951 - +3.3 735,964 + +0.9 735,964 + -0.2 735,965 - +2.0 735,965 - +0.8 736,081 + +1.0 736,584 - DZA65_RS03485 0.64 -0.6
Or see this region's nucleotide sequence