Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02295 and DZA65_RS02300 are separated by 66 nucleotides DZA65_RS02300 and DZA65_RS02305 are separated by 34 nucleotides DZA65_RS02305 and DZA65_RS02310 are separated by 75 nucleotides
DZA65_RS02295: DZA65_RS02295 - cytolytic delta-endotoxin, at 496,478 to 497,140
_RS02295
DZA65_RS02300: DZA65_RS02300 - type-1Ba cytolytic delta-endotoxin, at 497,207 to 497,818
_RS02300
DZA65_RS02305: DZA65_RS02305 - type-2Aa cytolytic delta-endotoxin, at 497,853 to 498,452
_RS02305
DZA65_RS02310: DZA65_RS02310 - delta-endotoxin CytB, at 498,528 to 499,163
_RS02310
Position (kb) 497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.877 kb on + strand, within DZA65_RS02295 at 496.878 kb on - strand, within DZA65_RS02295 at 496.916 kb on - strand, within DZA65_RS02295 at 496.930 kb on + strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.983 kb on + strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 497.042 kb on + strand, within DZA65_RS02295 at 497.049 kb on + strand, within DZA65_RS02295 at 497.077 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.108 kb on - strand at 497.108 kb on - strand at 497.131 kb on + strand at 497.131 kb on + strand at 497.132 kb on - strand at 497.140 kb on + strand at 497.140 kb on + strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.159 kb on + strand at 497.160 kb on - strand at 497.191 kb on - strand at 497.195 kb on + strand at 497.297 kb on + strand, within DZA65_RS02300 at 497.391 kb on - strand, within DZA65_RS02300 at 497.397 kb on + strand, within DZA65_RS02300 at 497.443 kb on + strand, within DZA65_RS02300 at 497.511 kb on + strand, within DZA65_RS02300 at 497.612 kb on - strand, within DZA65_RS02300 at 497.756 kb on + strand, within DZA65_RS02300 at 497.810 kb on + strand at 497.831 kb on + strand at 497.831 kb on + strand at 497.832 kb on - strand at 497.832 kb on - strand at 497.833 kb on + strand at 497.834 kb on - strand at 497.849 kb on - strand at 497.855 kb on - strand at 497.885 kb on + strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.957 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.043 kb on + strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.082 kb on + strand, within DZA65_RS02305 at 498.083 kb on - strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand at 498.169 kb on - strand, within DZA65_RS02305 at 498.224 kb on + strand at 498.224 kb on + strand, within DZA65_RS02305 at 498.237 kb on + strand, within DZA65_RS02305 at 498.238 kb on - strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.266 kb on + strand, within DZA65_RS02305 at 498.289 kb on - strand, within DZA65_RS02305 at 498.324 kb on - strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.345 kb on - strand, within DZA65_RS02305 at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.444 kb on - strand at 498.444 kb on - strand at 498.464 kb on - strand at 498.486 kb on + strand at 498.577 kb on + strand at 498.578 kb on - strand at 498.578 kb on - strand at 498.587 kb on + strand at 498.635 kb on + strand, within DZA65_RS02310 at 498.650 kb on + strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.713 kb on + strand, within DZA65_RS02310 at 498.714 kb on - strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 499.119 kb on + strand at 499.119 kb on + strand at 499.123 kb on - strand at 499.123 kb on - strand at 499.170 kb on - strand at 499.200 kb on + strand at 499.201 kb on - strand at 499.422 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.445 kb on - strand at 499.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 496,877 + DZA65_RS02295 0.60 -0.9 496,878 - DZA65_RS02295 0.60 -2.5 496,916 - DZA65_RS02295 0.66 -1.9 496,930 + DZA65_RS02295 0.68 +0.8 496,931 - DZA65_RS02295 0.68 -1.3 496,931 - DZA65_RS02295 0.68 +0.8 496,931 - DZA65_RS02295 0.68 +2.7 496,981 + DZA65_RS02295 0.76 +0.4 496,981 + DZA65_RS02295 0.76 +2.6 496,981 + DZA65_RS02295 0.76 +1.6 496,981 + DZA65_RS02295 0.76 -1.0 496,982 - DZA65_RS02295 0.76 +2.8 496,982 - DZA65_RS02295 0.76 -0.9 496,983 + DZA65_RS02295 0.76 -2.3 496,984 - DZA65_RS02295 0.76 +2.0 496,984 - DZA65_RS02295 0.76 -0.2 496,984 - DZA65_RS02295 0.76 -0.2 496,984 - DZA65_RS02295 0.76 +0.4 497,042 + DZA65_RS02295 0.85 -2.2 497,049 + DZA65_RS02295 0.86 -1.2 497,077 + +0.3 497,103 + -0.1 497,103 + -0.9 497,103 + -1.2 497,103 + +1.7 497,103 + -1.9 497,103 + +3.1 497,104 - -0.5 497,104 - -1.5 497,104 - -0.5 497,104 - -0.5 497,104 - -1.5 497,107 + -0.9 497,107 + -1.0 497,107 + +0.1 497,107 + +0.1 497,108 - -0.7 497,108 - +0.6 497,131 + +0.6 497,131 + -3.0 497,132 - -2.5 497,140 + -2.5 497,140 + +1.7 497,141 - -1.7 497,141 - -0.4 497,141 - +0.8 497,141 - -0.4 497,141 - +1.1 497,159 + +0.5 497,160 - +1.0 497,191 - +1.1 497,195 + +0.1 497,297 + DZA65_RS02300 0.15 -2.1 497,391 - DZA65_RS02300 0.30 -0.9 497,397 + DZA65_RS02300 0.31 -1.2 497,443 + DZA65_RS02300 0.39 -0.5 497,511 + DZA65_RS02300 0.50 -1.9 497,612 - DZA65_RS02300 0.66 -2.2 497,756 + DZA65_RS02300 0.90 -1.9 497,810 + -2.2 497,831 + -1.2 497,831 + -1.2 497,832 - +0.8 497,832 - -1.5 497,833 + -2.6 497,834 - +1.1 497,849 - +0.2 497,855 - -2.1 497,885 + -1.4 497,886 - +0.5 497,886 - -3.0 497,886 - -2.2 497,886 - +0.8 497,886 - -2.7 497,886 - +2.7 497,957 + DZA65_RS02305 0.17 -2.5 497,963 + DZA65_RS02305 0.18 +0.9 497,963 + DZA65_RS02305 0.18 -1.7 497,963 + DZA65_RS02305 0.18 -0.2 497,963 + DZA65_RS02305 0.18 -0.9 497,963 + DZA65_RS02305 0.18 +1.1 497,964 - DZA65_RS02305 0.18 +0.1 497,964 - DZA65_RS02305 0.18 +0.9 498,032 + DZA65_RS02305 0.30 -1.5 498,032 + DZA65_RS02305 0.30 -0.5 498,032 + DZA65_RS02305 0.30 -2.1 498,032 + DZA65_RS02305 0.30 -2.0 498,032 + DZA65_RS02305 0.30 -1.7 498,033 - DZA65_RS02305 0.30 -2.3 498,033 - DZA65_RS02305 0.30 +0.1 498,035 + DZA65_RS02305 0.30 -0.1 498,035 + DZA65_RS02305 0.30 +1.1 498,036 - DZA65_RS02305 0.30 +2.0 498,036 - DZA65_RS02305 0.30 -0.8 498,038 - DZA65_RS02305 0.31 -1.2 498,038 - DZA65_RS02305 0.31 -0.0 498,043 + DZA65_RS02305 0.32 -0.9 498,078 - DZA65_RS02305 0.38 -0.5 498,078 - DZA65_RS02305 0.38 -0.0 498,082 + DZA65_RS02305 0.38 -0.9 498,083 - DZA65_RS02305 0.38 -1.2 498,168 + DZA65_RS02305 0.53 -0.3 498,168 + DZA65_RS02305 0.53 -1.4 498,168 + DZA65_RS02305 0.53 -1.2 498,168 + DZA65_RS02305 0.53 -1.5 498,169 - DZA65_RS02305 0.53 -0.5 498,169 - DZA65_RS02305 0.53 -1.5 498,169 - -1.2 498,169 - DZA65_RS02305 0.53 -0.5 498,224 + +1.8 498,224 + DZA65_RS02305 0.62 +0.4 498,237 + DZA65_RS02305 0.64 -1.2 498,238 - DZA65_RS02305 0.64 -2.4 498,242 + DZA65_RS02305 0.65 -1.9 498,242 + DZA65_RS02305 0.65 -3.1 498,242 + DZA65_RS02305 0.65 +1.1 498,242 + DZA65_RS02305 0.65 -1.2 498,242 + DZA65_RS02305 0.65 -0.3 498,243 - DZA65_RS02305 0.65 +0.1 498,243 - DZA65_RS02305 0.65 -2.5 498,248 + DZA65_RS02305 0.66 -0.2 498,248 + DZA65_RS02305 0.66 -0.5 498,266 + DZA65_RS02305 0.69 +3.0 498,289 - DZA65_RS02305 0.73 -0.6 498,324 - DZA65_RS02305 0.79 +2.5 498,341 + DZA65_RS02305 0.81 +0.5 498,341 + DZA65_RS02305 0.81 +2.0 498,345 - DZA65_RS02305 0.82 +0.5 498,440 + -1.1 498,440 + -0.2 498,440 + -1.5 498,440 + +2.1 498,440 + -3.2 498,440 + -0.2 498,441 - +1.2 498,441 - +0.5 498,441 - +0.5 498,441 - -1.1 498,443 + -1.4 498,443 + -0.2 498,443 + -1.7 498,444 - -0.2 498,444 - +0.5 498,464 - -0.9 498,486 + +1.3 498,577 + -0.3 498,578 - +1.5 498,578 - -2.7 498,587 + -0.9 498,635 + DZA65_RS02310 0.17 -0.9 498,650 + DZA65_RS02310 0.19 +0.1 498,651 - DZA65_RS02310 0.19 -1.7 498,651 - DZA65_RS02310 0.19 +2.0 498,709 + DZA65_RS02310 0.28 +1.8 498,709 + DZA65_RS02310 0.28 +2.4 498,710 - DZA65_RS02310 0.29 -2.2 498,710 - DZA65_RS02310 0.29 -0.0 498,710 - DZA65_RS02310 0.29 +1.3 498,713 + DZA65_RS02310 0.29 +0.1 498,714 - DZA65_RS02310 0.29 +0.1 498,715 + DZA65_RS02310 0.29 +1.3 498,715 + DZA65_RS02310 0.29 -1.1 498,715 + DZA65_RS02310 0.29 +3.0 498,716 - DZA65_RS02310 0.30 -1.2 498,716 - DZA65_RS02310 0.30 +2.1 498,716 - DZA65_RS02310 0.30 -1.8 498,785 + DZA65_RS02310 0.40 -2.5 498,785 + DZA65_RS02310 0.40 -0.5 499,119 + -1.2 499,119 + -0.2 499,123 - -1.2 499,123 - +0.1 499,170 - +1.3 499,200 + -0.7 499,201 - +0.1 499,422 + -0.5 499,444 + -0.9 499,444 + -0.5 499,444 + +1.4 499,445 - +1.2 499,445 - -3.1
Or see this region's nucleotide sequence