Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01725 and DZA65_RS01730 overlap by 1 nucleotides DZA65_RS01730 and DZA65_RS01735 are separated by 186 nucleotides DZA65_RS01735 and DZA65_RS01740 are separated by 12 nucleotides DZA65_RS01740 and DZA65_RS01745 are separated by 64 nucleotides
DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392
_RS01725
DZA65_RS01730: DZA65_RS01730 - esterase YqiA, at 375,392 to 375,973
_RS01730
DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055
_RS01735
DZA65_RS01740: DZA65_RS01740 - LysR family transcriptional regulator, at 378,068 to 378,963
_RS01740
DZA65_RS01745: DZA65_RS01745 - NAD(P)H-dependent oxidoreductase, at 379,028 to 379,609
_RS01745
Position (kb) 376
377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 375.174 kb on - strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.339 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.387 kb on + strand at 375.388 kb on - strand at 375.407 kb on + strand at 375.408 kb on - strand at 375.408 kb on - strand at 375.519 kb on - strand, within DZA65_RS01730 at 375.609 kb on - strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.719 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.759 kb on - strand, within DZA65_RS01730 at 375.845 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.864 kb on - strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.901 kb on + strand, within DZA65_RS01730 at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 376.055 kb on + strand at 376.056 kb on - strand at 376.056 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.093 kb on + strand at 376.093 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.108 kb on + strand at 378.196 kb on + strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.261 kb on + strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.430 kb on + strand, within DZA65_RS01740 at 378.430 kb on + strand, within DZA65_RS01740 at 378.431 kb on - strand, within DZA65_RS01740 at 378.431 kb on - strand, within DZA65_RS01740 at 378.484 kb on + strand, within DZA65_RS01740 at 378.484 kb on + strand, within DZA65_RS01740 at 378.581 kb on - strand, within DZA65_RS01740 at 378.645 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.700 kb on + strand, within DZA65_RS01740 at 378.700 kb on + strand, within DZA65_RS01740 at 378.701 kb on - strand, within DZA65_RS01740 at 378.710 kb on + strand, within DZA65_RS01740 at 378.776 kb on + strand, within DZA65_RS01740 at 378.792 kb on + strand, within DZA65_RS01740 at 378.879 kb on - strand at 378.884 kb on - strand at 378.884 kb on - strand at 378.888 kb on + strand at 378.962 kb on - strand at 378.990 kb on + strand at 378.991 kb on - strand at 378.991 kb on - strand at 379.009 kb on + strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 375,174 - DZA65_RS01725 0.74 +1.2 375,275 + DZA65_RS01725 0.86 -2.0 375,275 + DZA65_RS01725 0.86 -0.5 375,275 + DZA65_RS01725 0.86 -1.7 375,275 + DZA65_RS01725 0.86 +0.5 375,276 - DZA65_RS01725 0.86 -2.4 375,276 - DZA65_RS01725 0.86 +0.9 375,276 - DZA65_RS01725 0.86 -0.2 375,276 - DZA65_RS01725 0.86 +0.2 375,339 + +1.0 375,371 + +0.0 375,371 + +0.2 375,371 + +0.2 375,387 + -0.0 375,388 - -1.4 375,407 + +1.4 375,408 - +1.1 375,408 - +0.5 375,519 - DZA65_RS01730 0.22 -0.4 375,609 - DZA65_RS01730 0.37 -2.0 375,611 + DZA65_RS01730 0.38 +4.3 375,611 + DZA65_RS01730 0.38 +0.3 375,611 + DZA65_RS01730 0.38 +0.2 375,612 - DZA65_RS01730 0.38 +2.0 375,612 - DZA65_RS01730 0.38 +1.9 375,612 - DZA65_RS01730 0.38 +0.8 375,677 + DZA65_RS01730 0.49 -1.7 375,677 + DZA65_RS01730 0.49 -1.8 375,677 + DZA65_RS01730 0.49 -0.3 375,677 + DZA65_RS01730 0.49 -0.4 375,678 - DZA65_RS01730 0.49 +2.4 375,678 - DZA65_RS01730 0.49 +3.7 375,678 - DZA65_RS01730 0.49 -2.4 375,719 + DZA65_RS01730 0.56 -0.2 375,734 + DZA65_RS01730 0.59 +0.9 375,734 + DZA65_RS01730 0.59 +0.2 375,734 + DZA65_RS01730 0.59 -2.0 375,734 + -1.4 375,734 + DZA65_RS01730 0.59 -0.4 375,734 + DZA65_RS01730 0.59 +1.0 375,734 + DZA65_RS01730 0.59 +0.2 375,734 + DZA65_RS01730 0.59 -0.5 375,734 + DZA65_RS01730 0.59 +1.2 375,734 + DZA65_RS01730 0.59 -0.8 375,734 + DZA65_RS01730 0.59 -0.4 375,734 + DZA65_RS01730 0.59 +0.2 375,734 + DZA65_RS01730 0.59 +1.4 375,734 + DZA65_RS01730 0.59 +2.2 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +1.0 375,734 + DZA65_RS01730 0.59 +1.2 375,734 + DZA65_RS01730 0.59 +1.2 375,734 + DZA65_RS01730 0.59 -0.2 375,734 + -1.4 375,734 + DZA65_RS01730 0.59 -0.8 375,735 - DZA65_RS01730 0.59 -1.4 375,735 - DZA65_RS01730 0.59 -0.7 375,735 - DZA65_RS01730 0.59 -1.2 375,735 - DZA65_RS01730 0.59 +1.2 375,735 - DZA65_RS01730 0.59 +0.5 375,735 - DZA65_RS01730 0.59 -2.0 375,735 - DZA65_RS01730 0.59 +0.2 375,735 - DZA65_RS01730 0.59 -0.7 375,735 - DZA65_RS01730 0.59 +1.2 375,735 - DZA65_RS01730 0.59 -1.4 375,735 - DZA65_RS01730 0.59 +1.4 375,735 - DZA65_RS01730 0.59 +0.3 375,735 - DZA65_RS01730 0.59 +0.9 375,735 - DZA65_RS01730 0.59 +0.6 375,735 - DZA65_RS01730 0.59 +3.0 375,741 + DZA65_RS01730 0.60 +1.2 375,741 + DZA65_RS01730 0.60 -1.7 375,741 + DZA65_RS01730 0.60 -2.3 375,741 + DZA65_RS01730 0.60 -2.5 375,742 - DZA65_RS01730 0.60 +2.2 375,742 - DZA65_RS01730 0.60 -1.2 375,742 - DZA65_RS01730 0.60 -1.4 375,758 + DZA65_RS01730 0.63 -0.0 375,758 + DZA65_RS01730 0.63 -2.3 375,758 + DZA65_RS01730 0.63 -0.8 375,759 - DZA65_RS01730 0.63 -1.7 375,845 + DZA65_RS01730 0.78 +1.4 375,863 + DZA65_RS01730 0.81 +1.9 375,863 + DZA65_RS01730 0.81 +1.2 375,863 + DZA65_RS01730 0.81 +0.6 375,863 + DZA65_RS01730 0.81 -1.2 375,863 + DZA65_RS01730 0.81 +0.5 375,863 + DZA65_RS01730 0.81 +2.7 375,864 - DZA65_RS01730 0.81 -0.4 375,866 + DZA65_RS01730 0.81 -1.2 375,866 + DZA65_RS01730 0.81 +0.2 375,866 + DZA65_RS01730 0.81 +0.9 375,866 + DZA65_RS01730 0.81 +0.7 375,866 + DZA65_RS01730 0.81 -0.4 375,866 + DZA65_RS01730 0.81 +2.0 375,867 - DZA65_RS01730 0.82 -1.9 375,867 - DZA65_RS01730 0.82 +2.2 375,867 - DZA65_RS01730 0.82 +1.2 375,867 - DZA65_RS01730 0.82 -1.8 375,901 + DZA65_RS01730 0.87 +0.6 375,929 + -0.8 375,929 + +1.1 375,929 + +0.2 375,929 + +0.2 375,929 + -1.8 375,929 + -0.8 375,929 + -1.2 375,929 + -2.9 375,930 - -0.8 375,930 - -0.2 375,930 - -1.2 375,930 - -2.8 375,930 - +3.0 376,055 + -1.0 376,056 - +0.2 376,056 - -0.7 376,075 - -1.7 376,075 - +1.2 376,093 + +1.2 376,093 + -0.2 376,106 + +0.2 376,106 + -1.7 376,106 + -2.0 376,106 + -1.8 376,106 + +1.0 376,106 + +3.4 376,106 + +0.2 376,107 - -2.5 376,107 - -1.7 376,107 - -0.4 376,108 + -0.4 378,196 + DZA65_RS01740 0.14 -2.2 378,197 - DZA65_RS01740 0.14 +2.0 378,197 - DZA65_RS01740 0.14 +2.1 378,197 - DZA65_RS01740 0.14 -0.4 378,197 - DZA65_RS01740 0.14 +0.2 378,261 + DZA65_RS01740 0.22 -1.2 378,262 - DZA65_RS01740 0.22 +0.5 378,262 - DZA65_RS01740 0.22 -0.2 378,262 - DZA65_RS01740 0.22 +0.3 378,262 - DZA65_RS01740 0.22 -0.8 378,262 - DZA65_RS01740 0.22 -1.4 378,262 - DZA65_RS01740 0.22 -0.4 378,430 + DZA65_RS01740 0.40 +0.2 378,430 + DZA65_RS01740 0.40 +5.1 378,431 - DZA65_RS01740 0.41 +0.4 378,431 - DZA65_RS01740 0.41 -1.2 378,484 + DZA65_RS01740 0.46 +2.4 378,484 + DZA65_RS01740 0.46 -0.2 378,581 - DZA65_RS01740 0.57 -1.9 378,645 + DZA65_RS01740 0.64 +1.2 378,697 + DZA65_RS01740 0.70 -0.2 378,697 + DZA65_RS01740 0.70 -0.4 378,697 + DZA65_RS01740 0.70 +0.4 378,697 + DZA65_RS01740 0.70 -0.8 378,698 - DZA65_RS01740 0.70 +0.4 378,698 - DZA65_RS01740 0.70 +1.0 378,698 - DZA65_RS01740 0.70 -2.1 378,698 - DZA65_RS01740 0.70 -1.2 378,700 + DZA65_RS01740 0.71 +0.4 378,700 + DZA65_RS01740 0.71 -0.3 378,701 - DZA65_RS01740 0.71 +0.6 378,710 + DZA65_RS01740 0.72 -0.3 378,776 + DZA65_RS01740 0.79 -0.4 378,792 + DZA65_RS01740 0.81 +1.7 378,879 - -1.2 378,884 - -1.8 378,884 - +0.2 378,888 + -1.7 378,962 - -1.6 378,990 + +1.3 378,991 - +0.1 378,991 - -1.2 379,009 + -1.2 379,010 - -2.3 379,010 - +0.3 379,010 - -1.6 379,010 - +1.3
Or see this region's nucleotide sequence