Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08945 and DZA65_RS08950 are separated by 2 nucleotides DZA65_RS08950 and DZA65_RS08955 are separated by 153 nucleotides DZA65_RS08955 and DZA65_RS22840 overlap by 39 nucleotides DZA65_RS22840 and DZA65_RS08960 are separated by 198 nucleotides
DZA65_RS08945: DZA65_RS08945 - CidB/LrgB family autolysis modulator, at 1,885,617 to 1,886,312
_RS08945
DZA65_RS08950: DZA65_RS08950 - CidA/LrgA family protein, at 1,886,315 to 1,886,725
_RS08950
DZA65_RS08955: DZA65_RS08955 - glycoside hydrolase family 3 protein, at 1,886,879 to 1,887,241
_RS08955
DZA65_RS22840: DZA65_RS22840 - hypothetical protein, at 1,887,203 to 1,887,418
_RS22840
DZA65_RS08960: DZA65_RS08960 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,887,617 to 1,888,900
_RS08960
Position (kb) 1887
1888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1886.305 kb on + strand at 1886.305 kb on + strand at 1886.305 kb on + strand at 1886.305 kb on + strand at 1886.306 kb on - strand at 1886.306 kb on - strand at 1886.306 kb on - strand at 1886.306 kb on - strand at 1886.416 kb on + strand, within DZA65_RS08950 at 1886.416 kb on + strand, within DZA65_RS08950 at 1886.469 kb on + strand, within DZA65_RS08950 at 1886.469 kb on + strand, within DZA65_RS08950 at 1886.469 kb on + strand, within DZA65_RS08950 at 1886.469 kb on + strand, within DZA65_RS08950 at 1886.470 kb on - strand, within DZA65_RS08950 at 1886.470 kb on - strand, within DZA65_RS08950 at 1886.470 kb on - strand, within DZA65_RS08950 at 1886.470 kb on - strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.472 kb on + strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.473 kb on - strand, within DZA65_RS08950 at 1886.517 kb on + strand, within DZA65_RS08950 at 1886.517 kb on + strand, within DZA65_RS08950 at 1886.517 kb on + strand, within DZA65_RS08950 at 1886.517 kb on + strand, within DZA65_RS08950 at 1886.517 kb on + strand, within DZA65_RS08950 at 1886.518 kb on - strand, within DZA65_RS08950 at 1886.518 kb on - strand, within DZA65_RS08950 at 1886.633 kb on + strand, within DZA65_RS08950 at 1886.634 kb on - strand, within DZA65_RS08950 at 1886.642 kb on + strand, within DZA65_RS08950 at 1886.670 kb on + strand, within DZA65_RS08950 at 1886.671 kb on - strand, within DZA65_RS08950 at 1886.691 kb on - strand at 1886.694 kb on + strand at 1886.695 kb on - strand at 1886.759 kb on + strand at 1886.759 kb on + strand at 1886.760 kb on - strand at 1886.766 kb on - strand at 1886.766 kb on - strand at 1886.769 kb on - strand at 1886.769 kb on - strand at 1886.769 kb on - strand at 1886.783 kb on - strand at 1886.817 kb on + strand at 1886.817 kb on + strand at 1886.817 kb on + strand at 1886.818 kb on - strand at 1886.818 kb on - strand at 1886.818 kb on - strand at 1886.818 kb on - strand at 1886.918 kb on - strand, within DZA65_RS08955 at 1887.000 kb on + strand, within DZA65_RS08955 at 1887.000 kb on + strand, within DZA65_RS08955 at 1887.001 kb on - strand, within DZA65_RS08955 at 1887.001 kb on - strand, within DZA65_RS08955 at 1887.032 kb on + strand, within DZA65_RS08955 at 1887.032 kb on + strand, within DZA65_RS08955 at 1887.033 kb on - strand, within DZA65_RS08955 at 1887.033 kb on - strand, within DZA65_RS08955 at 1887.033 kb on - strand, within DZA65_RS08955 at 1887.033 kb on - strand, within DZA65_RS08955 at 1887.112 kb on + strand, within DZA65_RS08955 at 1887.112 kb on + strand, within DZA65_RS08955 at 1887.112 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand, within DZA65_RS08955 at 1887.114 kb on + strand at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.115 kb on - strand, within DZA65_RS08955 at 1887.165 kb on + strand, within DZA65_RS08955 at 1887.244 kb on - strand, within DZA65_RS22840 at 1887.353 kb on + strand, within DZA65_RS22840 at 1887.464 kb on + strand at 1887.464 kb on + strand at 1887.586 kb on + strand at 1887.587 kb on - strand at 1887.587 kb on - strand at 1887.619 kb on - strand at 1887.619 kb on - strand at 1887.619 kb on - strand at 1887.619 kb on - strand at 1887.709 kb on - strand at 1887.709 kb on - strand at 1887.709 kb on - strand at 1887.776 kb on - strand, within DZA65_RS08960 at 1887.776 kb on - strand, within DZA65_RS08960 at 1888.062 kb on + strand, within DZA65_RS08960 at 1888.062 kb on + strand, within DZA65_RS08960 at 1888.063 kb on - strand, within DZA65_RS08960 at 1888.063 kb on - strand, within DZA65_RS08960 at 1888.063 kb on - strand, within DZA65_RS08960 at 1888.181 kb on + strand, within DZA65_RS08960 at 1888.181 kb on + strand, within DZA65_RS08960 at 1888.181 kb on + strand, within DZA65_RS08960 at 1888.181 kb on + strand, within DZA65_RS08960 at 1888.181 kb on + strand, within DZA65_RS08960 at 1888.182 kb on - strand, within DZA65_RS08960 at 1888.182 kb on - strand, within DZA65_RS08960 at 1888.182 kb on - strand, within DZA65_RS08960 at 1888.182 kb on - strand, within DZA65_RS08960 at 1888.199 kb on + strand, within DZA65_RS08960 at 1888.222 kb on - strand, within DZA65_RS08960 at 1888.233 kb on + strand, within DZA65_RS08960 at 1888.234 kb on - strand, within DZA65_RS08960 at 1888.234 kb on - strand, within DZA65_RS08960 at 1888.234 kb on - strand, within DZA65_RS08960 at 1888.234 kb on - strand, within DZA65_RS08960 at 1888.398 kb on + strand, within DZA65_RS08960 at 1888.398 kb on + strand, within DZA65_RS08960 at 1888.399 kb on - strand at 1888.399 kb on - strand, within DZA65_RS08960 at 1888.399 kb on - strand, within DZA65_RS08960 at 1888.399 kb on - strand, within DZA65_RS08960 at 1888.407 kb on + strand, within DZA65_RS08960
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 1,886,305 + -1.3 1,886,305 + -2.9 1,886,305 + +2.0 1,886,305 + -1.9 1,886,306 - +1.1 1,886,306 - -1.3 1,886,306 - -1.4 1,886,306 - -2.3 1,886,416 + DZA65_RS08950 0.25 -0.1 1,886,416 + DZA65_RS08950 0.25 -1.6 1,886,469 + DZA65_RS08950 0.37 -0.4 1,886,469 + DZA65_RS08950 0.37 -0.9 1,886,469 + DZA65_RS08950 0.37 -0.7 1,886,469 + DZA65_RS08950 0.37 +0.5 1,886,470 - DZA65_RS08950 0.38 -2.3 1,886,470 - DZA65_RS08950 0.38 +1.1 1,886,470 - DZA65_RS08950 0.38 -0.6 1,886,470 - DZA65_RS08950 0.38 -1.9 1,886,472 + DZA65_RS08950 0.38 -2.1 1,886,472 + DZA65_RS08950 0.38 +1.7 1,886,472 + DZA65_RS08950 0.38 -0.7 1,886,472 + DZA65_RS08950 0.38 +0.7 1,886,472 + DZA65_RS08950 0.38 -2.3 1,886,472 + DZA65_RS08950 0.38 -0.3 1,886,472 + DZA65_RS08950 0.38 -0.9 1,886,473 - DZA65_RS08950 0.38 +0.3 1,886,473 - DZA65_RS08950 0.38 +0.7 1,886,473 - DZA65_RS08950 0.38 -0.5 1,886,473 - DZA65_RS08950 0.38 +0.2 1,886,473 - DZA65_RS08950 0.38 -0.9 1,886,473 - DZA65_RS08950 0.38 +2.1 1,886,473 - DZA65_RS08950 0.38 +4.0 1,886,517 + DZA65_RS08950 0.49 -1.3 1,886,517 + DZA65_RS08950 0.49 -1.3 1,886,517 + DZA65_RS08950 0.49 -0.6 1,886,517 + DZA65_RS08950 0.49 +1.7 1,886,517 + DZA65_RS08950 0.49 +0.5 1,886,518 - DZA65_RS08950 0.49 -0.9 1,886,518 - DZA65_RS08950 0.49 +0.2 1,886,633 + DZA65_RS08950 0.77 +2.9 1,886,634 - DZA65_RS08950 0.78 -0.3 1,886,642 + DZA65_RS08950 0.80 -0.8 1,886,670 + DZA65_RS08950 0.86 +0.2 1,886,671 - DZA65_RS08950 0.87 -1.9 1,886,691 - +0.1 1,886,694 + +0.9 1,886,695 - -2.9 1,886,759 + -0.8 1,886,759 + -1.9 1,886,760 - -1.6 1,886,766 - -0.5 1,886,766 - -1.6 1,886,769 - +0.1 1,886,769 - -3.4 1,886,769 - +1.9 1,886,783 - -0.7 1,886,817 + +3.2 1,886,817 + -3.2 1,886,817 + +1.7 1,886,818 - -0.3 1,886,818 - +1.8 1,886,818 - -2.5 1,886,818 - -2.1 1,886,918 - DZA65_RS08955 0.11 +0.2 1,887,000 + DZA65_RS08955 0.33 -0.1 1,887,000 + DZA65_RS08955 0.33 +0.5 1,887,001 - DZA65_RS08955 0.34 +1.3 1,887,001 - DZA65_RS08955 0.34 -0.3 1,887,032 + DZA65_RS08955 0.42 -2.6 1,887,032 + DZA65_RS08955 0.42 -1.9 1,887,033 - DZA65_RS08955 0.42 -2.6 1,887,033 - DZA65_RS08955 0.42 -0.8 1,887,033 - DZA65_RS08955 0.42 +0.7 1,887,033 - DZA65_RS08955 0.42 -2.6 1,887,112 + DZA65_RS08955 0.64 +2.2 1,887,112 + DZA65_RS08955 0.64 -3.1 1,887,112 + DZA65_RS08955 0.64 -0.1 1,887,114 + DZA65_RS08955 0.65 -3.6 1,887,114 + DZA65_RS08955 0.65 -0.6 1,887,114 + DZA65_RS08955 0.65 -0.9 1,887,114 + DZA65_RS08955 0.65 +4.0 1,887,114 + DZA65_RS08955 0.65 +1.0 1,887,114 + DZA65_RS08955 0.65 +2.0 1,887,114 + DZA65_RS08955 0.65 -1.6 1,887,114 + DZA65_RS08955 0.65 -0.7 1,887,114 + -0.3 1,887,115 - DZA65_RS08955 0.65 -0.1 1,887,115 - DZA65_RS08955 0.65 +2.6 1,887,115 - DZA65_RS08955 0.65 -0.9 1,887,115 - DZA65_RS08955 0.65 -3.1 1,887,115 - DZA65_RS08955 0.65 +0.2 1,887,115 - DZA65_RS08955 0.65 -1.3 1,887,115 - DZA65_RS08955 0.65 -0.3 1,887,115 - DZA65_RS08955 0.65 +2.3 1,887,115 - DZA65_RS08955 0.65 -1.3 1,887,165 + DZA65_RS08955 0.79 +0.0 1,887,244 - DZA65_RS22840 0.19 -2.8 1,887,353 + DZA65_RS22840 0.69 -3.3 1,887,464 + -2.1 1,887,464 + -1.9 1,887,586 + +0.7 1,887,587 - -1.9 1,887,587 - +2.0 1,887,619 - -1.1 1,887,619 - -3.3 1,887,619 - -1.4 1,887,619 - -2.8 1,887,709 - +0.7 1,887,709 - +1.0 1,887,709 - -0.9 1,887,776 - DZA65_RS08960 0.12 +2.4 1,887,776 - DZA65_RS08960 0.12 -3.6 1,888,062 + DZA65_RS08960 0.35 -2.3 1,888,062 + DZA65_RS08960 0.35 +1.9 1,888,063 - DZA65_RS08960 0.35 +0.5 1,888,063 - DZA65_RS08960 0.35 +1.5 1,888,063 - DZA65_RS08960 0.35 +0.7 1,888,181 + DZA65_RS08960 0.44 -0.9 1,888,181 + DZA65_RS08960 0.44 -2.1 1,888,181 + DZA65_RS08960 0.44 -0.9 1,888,181 + DZA65_RS08960 0.44 -2.5 1,888,181 + DZA65_RS08960 0.44 -0.3 1,888,182 - DZA65_RS08960 0.44 -0.9 1,888,182 - DZA65_RS08960 0.44 -2.8 1,888,182 - DZA65_RS08960 0.44 -2.8 1,888,182 - DZA65_RS08960 0.44 -1.6 1,888,199 + DZA65_RS08960 0.45 -2.0 1,888,222 - DZA65_RS08960 0.47 +2.9 1,888,233 + DZA65_RS08960 0.48 -0.9 1,888,234 - DZA65_RS08960 0.48 -0.1 1,888,234 - DZA65_RS08960 0.48 -2.9 1,888,234 - DZA65_RS08960 0.48 -1.5 1,888,234 - DZA65_RS08960 0.48 +1.2 1,888,398 + DZA65_RS08960 0.61 +0.7 1,888,398 + DZA65_RS08960 0.61 +1.7 1,888,399 - -1.3 1,888,399 - DZA65_RS08960 0.61 +1.9 1,888,399 - DZA65_RS08960 0.61 -1.9 1,888,399 - DZA65_RS08960 0.61 -1.5 1,888,407 + DZA65_RS08960 0.62 -1.1
Or see this region's nucleotide sequence