Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22535

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,873,295	+		DZA65_RS22530	0.25	+3.1
4,873,295	+		DZA65_RS22530	0.25	-1.1
4,873,296	-		DZA65_RS22530	0.25	-3.7
4,873,345	+		DZA65_RS22530	0.29	-0.6
4,873,354	-		DZA65_RS22530	0.30	+2.2
4,873,354	-		DZA65_RS22530	0.30	-1.8
4,873,354	-		DZA65_RS22530	0.30	-2.8
4,873,394	+		DZA65_RS22530	0.33	+0.8
4,873,395	-		DZA65_RS22530	0.33	+1.2
4,873,395	-		DZA65_RS22530	0.33	-2.0
4,873,410	-		DZA65_RS22530	0.34	-2.4
4,873,452	+		DZA65_RS22530	0.37	-1.9
4,873,452	+		DZA65_RS22530	0.37	-0.4
4,873,452	+		DZA65_RS22530	0.37	-2.0
4,873,453	-		DZA65_RS22530	0.37	+1.6
4,873,453	-		DZA65_RS22530	0.37	-1.1
4,873,453	-		DZA65_RS22530	0.37	-2.0
4,873,490	+		DZA65_RS22530	0.40	+2.6
4,873,490	+		DZA65_RS22530	0.40	-0.5
4,873,490	+		DZA65_RS22530	0.40	-0.1
4,873,490	+		DZA65_RS22530	0.40	-0.3
4,873,563	+		DZA65_RS22530	0.45	-1.6
4,873,564	-		DZA65_RS22530	0.46	+0.8
4,873,564	-		DZA65_RS22530	0.46	+0.3
4,873,564	-		DZA65_RS22530	0.46	-2.4
4,873,598	+		DZA65_RS22530	0.48	-0.8
4,873,599	-		DZA65_RS22530	0.48	-2.1
4,873,599	-		DZA65_RS22530	0.48	-0.8
4,873,600	+		DZA65_RS22530	0.48	-0.8
4,873,600	+		DZA65_RS22530	0.48	-2.1
4,873,600	+		DZA65_RS22530	0.48	-2.1
4,873,600	+		DZA65_RS22530	0.48	-0.8
4,873,600	+		DZA65_RS22530	0.48	-0.4
4,873,600	+		DZA65_RS22530	0.48	-1.1
4,873,600	+		DZA65_RS22530	0.48	+0.7
4,873,601	-		DZA65_RS22530	0.48	-1.6
4,873,601	-		DZA65_RS22530	0.48	-0.0
4,873,601	-		DZA65_RS22530	0.48	+1.7
4,873,601	-		DZA65_RS22530	0.48	-0.6
4,873,601	-		DZA65_RS22530	0.48	+1.8
4,873,601	-		DZA65_RS22530	0.48	-0.4
4,873,601	-		DZA65_RS22530	0.48	-2.5
4,873,601	-		DZA65_RS22530	0.48	-2.1
4,873,601	-		DZA65_RS22530	0.48	+1.3
4,873,601	-		DZA65_RS22530	0.48	+1.5
4,873,601	-		DZA65_RS22530	0.48	-2.0
4,873,636	+		DZA65_RS22530	0.51	-1.1
4,873,636	+		DZA65_RS22530	0.51	+1.4
4,873,636	+		DZA65_RS22530	0.51	+2.5
4,873,636	+		DZA65_RS22530	0.51	+0.2
4,873,636	+		DZA65_RS22530	0.51	-3.9
4,873,636	+		DZA65_RS22530	0.51	-0.8
4,873,637	-		DZA65_RS22530	0.51	-1.8
4,873,637	-		DZA65_RS22530	0.51	-1.6
4,873,637	-		DZA65_RS22530	0.51	-1.4
4,873,637	-		DZA65_RS22530	0.51	-0.4
4,873,637	-		DZA65_RS22530	0.51	+3.0
4,873,637	-		DZA65_RS22530	0.51	-1.1
4,873,661	+		DZA65_RS22530	0.53	+0.2
4,873,661	+		DZA65_RS22530	0.53	-0.8
4,873,661	+		DZA65_RS22530	0.53	+5.5
4,873,662	-		DZA65_RS22530	0.53	-3.6
4,873,662	-		DZA65_RS22530	0.53	+0.8
4,873,662	-		DZA65_RS22530	0.53	-2.5
4,873,662	-		DZA65_RS22530	0.53	-1.4
4,873,662	-		DZA65_RS22530	0.53	-2.0
4,873,738	+		DZA65_RS22530	0.59	-0.8
4,873,739	-		DZA65_RS22530	0.59	-1.6
4,873,739	-		DZA65_RS22530	0.59	+2.8
4,873,772	+		DZA65_RS22530	0.61	-0.8
4,873,772	+		DZA65_RS22530	0.61	+2.4
4,873,772	+		DZA65_RS22530	0.61	+1.8
4,873,772	+		DZA65_RS22530	0.61	+1.7
4,873,773	-		DZA65_RS22530	0.61	+0.8
4,873,776	+		DZA65_RS22530	0.62	+0.4
4,873,776	+		DZA65_RS22530	0.62	+0.2
4,873,776	+		DZA65_RS22530	0.62	-1.8
4,873,776	+		DZA65_RS22530	0.62	-0.3
4,873,777	-		DZA65_RS22530	0.62	-2.4
4,873,777	-		DZA65_RS22530	0.62	-0.1
4,873,777	-		DZA65_RS22530	0.62	-1.3
4,873,777	-		DZA65_RS22530	0.62	-0.4
4,873,777	-		DZA65_RS22530	0.62	-3.1
4,873,886	+		DZA65_RS22530	0.70	-0.0
4,873,935	-		DZA65_RS22530	0.74	+1.4
4,873,935	-		DZA65_RS22530	0.74	+1.6
4,873,935	-		DZA65_RS22530	0.74	-1.4
4,873,957	-		DZA65_RS22530	0.75	-1.7
4,873,972	+		DZA65_RS22530	0.77	-1.8
4,873,972	+		DZA65_RS22530	0.77	+0.6
4,873,972	+		DZA65_RS22530	0.77	+0.2
4,873,972	+		DZA65_RS22530	0.77	+0.2
4,873,972	+		DZA65_RS22530	0.77	-1.8
4,873,972	+		DZA65_RS22530	0.77	+0.2
4,873,973	-		DZA65_RS22530	0.77	+3.9
4,873,973	-		DZA65_RS22530	0.77	-2.1
4,873,973	-		DZA65_RS22530	0.77	+2.2
4,873,973	-		DZA65_RS22530	0.77	+2.6
4,874,041	+		DZA65_RS22530	0.82	+3.3
4,874,042	-		DZA65_RS22530	0.82	-0.4
4,874,042	-		DZA65_RS22530	0.82	+0.5
4,874,042	-		DZA65_RS22530	0.82	+0.2
4,874,042	-		DZA65_RS22530	0.82	-0.1
4,874,042	-		DZA65_RS22530	0.82	+0.6
4,874,042	-		DZA65_RS22530	0.82	-0.7
4,874,043	+		DZA65_RS22530	0.82	-2.4
4,874,054	+		DZA65_RS22530	0.83	+0.0
4,874,055	-		DZA65_RS22530	0.83	-0.8
4,874,055	-		DZA65_RS22530	0.83	-0.1
4,874,161	-				+0.9
4,874,172	-				-1.4
4,874,216	+				+1.1
4,874,217	-				-0.8
4,874,234	+				-2.1
4,874,249	+				-2.0
4,874,249	+				+1.2
4,874,249	+				-0.8
4,874,249	+				-0.8
4,874,249	+				+1.9
4,874,249	+				-2.3
4,874,249	+				-3.1
4,874,249	+				-0.8
4,874,249	+				+0.9
4,874,250	-				-1.4
4,874,250	-				-2.1
4,874,250	-				-0.8
4,874,250	-				-3.0
4,874,250	-				+0.1
4,874,250	-				-0.1
4,874,253	-				-0.2
4,874,280	-				+1.1
4,874,305	+		DZA65_RS22535	0.10	-1.7
4,874,305	+				-1.8
4,874,305	+		DZA65_RS22535	0.10	-2.0
4,874,305	+		DZA65_RS22535	0.10	-2.1
4,874,305	+		DZA65_RS22535	0.10	+0.9
4,874,306	-		DZA65_RS22535	0.10	-0.5
4,874,306	-		DZA65_RS22535	0.10	+0.9
4,874,306	-		DZA65_RS22535	0.10	+0.4
4,874,306	-		DZA65_RS22535	0.10	+1.6
4,874,306	-		DZA65_RS22535	0.10	-0.9
4,874,306	-		DZA65_RS22535	0.10	-0.8
4,874,309	+		DZA65_RS22535	0.11	+0.2
4,874,309	+		DZA65_RS22535	0.11	-1.7
4,874,310	-		DZA65_RS22535	0.12	-2.1
4,874,310	-		DZA65_RS22535	0.12	-1.4
4,874,311	+		DZA65_RS22535	0.12	+0.0
4,874,311	+		DZA65_RS22535	0.12	-2.4
4,874,311	+		DZA65_RS22535	0.12	+0.2
4,874,311	+		DZA65_RS22535	0.12	+0.1
4,874,311	+		DZA65_RS22535	0.12	-0.1
4,874,312	-		DZA65_RS22535	0.12	+1.2
4,874,312	-		DZA65_RS22535	0.12	+0.2
4,874,380	+		DZA65_RS22535	0.36	+1.1
4,874,380	+		DZA65_RS22535	0.36	+0.3
4,874,380	+		DZA65_RS22535	0.36	-0.3
4,874,380	+		DZA65_RS22535	0.36	+0.2
4,874,380	+		DZA65_RS22535	0.36	-1.2
4,874,380	+		DZA65_RS22535	0.36	+2.8
4,874,380	+		DZA65_RS22535	0.36	+0.2
4,874,380	+		DZA65_RS22535	0.36	+0.2
4,874,380	+		DZA65_RS22535	0.36	+1.4
4,874,380	+		DZA65_RS22535	0.36	+1.9
4,874,380	+		DZA65_RS22535	0.36	-1.4
4,874,381	-		DZA65_RS22535	0.36	-0.6
4,874,381	-		DZA65_RS22535	0.36	+0.3
4,874,381	-		DZA65_RS22535	0.36	+0.5
4,874,381	-		DZA65_RS22535	0.36	-2.4
4,874,381	-		DZA65_RS22535	0.36	+3.6
4,874,381	-		DZA65_RS22535	0.36	+0.6
4,874,381	-		DZA65_RS22535	0.36	+1.9
4,874,381	-		DZA65_RS22535	0.36	-3.6
4,874,381	-		DZA65_RS22535	0.36	+0.9
4,874,381	-		DZA65_RS22535	0.36	+2.8
4,874,381	-		DZA65_RS22535	0.36	-0.1
4,874,381	-		DZA65_RS22535	0.36	-0.4
4,874,382	+		DZA65_RS22535	0.37	+1.0
4,874,382	+		DZA65_RS22535	0.37	-0.1
4,874,383	-				-0.8
4,874,417	+		DZA65_RS22535	0.49	+1.1
4,874,418	-		DZA65_RS22535	0.49	-1.5
4,874,418	-		DZA65_RS22535	0.49	+0.6
4,874,418	-		DZA65_RS22535	0.49	-3.1
4,874,426	+		DZA65_RS22535	0.52	-0.8
4,874,426	+		DZA65_RS22535	0.52	-0.8
4,874,426	+		DZA65_RS22535	0.52	-1.8
4,874,426	+		DZA65_RS22535	0.52	+0.8
4,874,426	+		DZA65_RS22535	0.52	+0.1
4,874,426	+		DZA65_RS22535	0.52	-1.1
4,874,426	+		DZA65_RS22535	0.52	+2.9
4,874,427	-		DZA65_RS22535	0.52	-0.8
4,874,427	-		DZA65_RS22535	0.52	+1.9
4,874,427	-		DZA65_RS22535	0.52	-0.8
4,874,427	-		DZA65_RS22535	0.52	+0.5
4,874,433	+		DZA65_RS22535	0.55	+1.8
4,874,434	-		DZA65_RS22535	0.55	-0.0
4,874,458	+		DZA65_RS22535	0.63	-1.1
4,874,459	-		DZA65_RS22535	0.64	-0.8
4,874,464	-		DZA65_RS22535	0.65	+3.1
4,874,464	-		DZA65_RS22535	0.65	+0.7
4,874,485	+		DZA65_RS22535	0.73	+3.5
4,874,485	+		DZA65_RS22535	0.73	+1.2
4,874,485	+		DZA65_RS22535	0.73	+3.2
4,874,485	+		DZA65_RS22535	0.73	-2.8
4,874,485	+		DZA65_RS22535	0.73	+0.2
4,874,486	-		DZA65_RS22535	0.73	-3.1
4,874,486	-		DZA65_RS22535	0.73	-0.3
4,874,486	-		DZA65_RS22535	0.73	+0.1
4,874,486	-		DZA65_RS22535	0.73	-0.2
4,874,486	-		DZA65_RS22535	0.73	-0.3
4,874,494	+		DZA65_RS22535	0.76	-3.1
4,874,494	+		DZA65_RS22535	0.76	-4.2
4,874,494	+		DZA65_RS22535	0.76	-2.3
4,874,494	+		DZA65_RS22535	0.76	-2.6
4,874,494	+		DZA65_RS22535	0.76	-1.6
4,874,494	+		DZA65_RS22535	0.76	-1.8
4,874,495	-		DZA65_RS22535	0.76	-3.1
4,874,495	-		DZA65_RS22535	0.76	-3.1
4,874,495	-		DZA65_RS22535	0.76	-2.3
4,874,495	-		DZA65_RS22535	0.76	-0.0
4,874,495	-		DZA65_RS22535	0.76	-0.4
4,874,495	-		DZA65_RS22535	0.76	-1.1
4,874,495	-		DZA65_RS22535	0.76	-1.6
4,874,495	-		DZA65_RS22535	0.76	+0.8
4,874,495	-		DZA65_RS22535	0.76	-2.3
4,874,495	-		DZA65_RS22535	0.76	-1.1
4,874,495	-		DZA65_RS22535	0.76	-0.4
4,874,530	+		DZA65_RS22535	0.88	-0.2
4,874,530	+		DZA65_RS22535	0.88	-1.4
4,874,531	-		DZA65_RS22535	0.89	-0.8
4,874,548	+				-2.3
4,874,548	+				-1.1
4,874,598	+				+1.9
4,874,727	+				-2.8
4,874,727	+				-0.4
4,874,727	+				-1.1
4,874,727	+				+1.9
4,874,727	+				+0.2
4,874,727	+				-2.3
4,874,727	+				-2.3
4,874,727	+				+0.9
4,874,727	+				-1.1
4,874,727	+				+3.9
4,874,727	+				+4.1
4,874,728	-				-2.0
4,874,728	-				+0.5
4,874,728	-				-1.3
4,874,728	-				-0.8
4,874,728	-				+0.2
4,874,728	-				+0.1
4,874,728	-				+4.0
4,874,728	-				-1.5
4,874,738	+				+2.9
4,874,738	+				-0.4
4,874,739	-				-1.1
4,874,742	+				-1.4
4,874,742	+				-1.6
4,874,742	+				+0.6
4,874,742	+				+1.6
4,874,742	+				-0.8
4,874,742	+				-2.6
4,874,742	+				+1.4
4,874,742	+				-1.0
4,874,742	+				+0.3
4,874,743	-				+0.2
4,874,743	-				-0.8
4,874,743	-				+1.8
4,874,743	-				-1.4
4,874,743	-				-0.8
4,874,743	-				-0.8
4,874,743	-				+0.3
4,874,743	-				+2.2
4,874,743	-				-2.1
4,874,743	-				-1.6
4,874,783	+				+0.6
4,874,783	+				+0.8
4,874,783	+				+1.5
4,874,783	+				-1.6
4,874,783	+				+1.2
4,874,784	-				+1.7
4,874,784	-				-0.6
4,874,784	-				+0.8
4,874,784	-				+2.1
4,874,789	+				+1.6
4,874,789	+				-0.4
4,874,789	+				+2.4
4,874,789	+				+0.2
4,874,789	+				-1.7
4,874,789	+				+1.2
4,874,789	+				-0.6
4,874,790	-				-1.4
4,874,790	-				-0.5
4,874,790	-				-0.2
4,874,790	-				-1.3
4,874,790	-				+0.7
4,874,790	-				+1.0
4,874,790	-				+0.1
4,874,790	-				-0.4
4,874,790	-				+0.8
4,874,791	+				-1.1
4,874,792	-				+1.2
4,874,803	+				+0.2
4,874,804	-				+0.2
4,874,809	-				-0.4
4,874,810	+				+0.4
4,874,810	+				-1.1
4,874,811	-				-0.8
4,874,822	+				-2.4
4,874,822	+				+3.0
4,874,823	-				+1.0
4,874,849	+				+1.7
4,874,884	+				-2.1
4,874,885	-				-3.5
4,874,885	-				-1.1
4,874,885	-				+1.2
4,874,885	-				+1.3
4,874,891	+				-1.6
4,874,898	+				+1.4
4,874,898	+				+0.7
4,874,899	-				-0.8
4,874,899	-				-1.0
4,874,917	+				+0.6
4,874,917	+				-0.4
4,874,917	+				-2.0
4,874,917	+				-1.0
4,874,917	+				+1.2
4,874,917	+				+2.4
4,874,918	-				-1.1
4,874,918	-				+0.4
4,874,937	+				+0.9
4,874,937	+				-3.0
4,874,937	+				-0.7
4,874,938	-				-1.6
4,874,938	-				-0.4
4,874,938	-				-0.8
4,874,938	-				+1.2
4,874,948	+				-1.6
4,874,955	+				+1.0
4,874,955	+				+0.2
4,874,955	+				+0.8
4,874,955	+				+0.6
4,874,955	+				-0.1
4,874,955	+				+1.3
4,874,955	+				-0.4
4,874,955	+				-0.4
4,874,955	+				+0.9
4,874,955	+				-0.3
4,874,955	+				-1.1
4,874,956	-				-2.7
4,874,956	-				+1.5
4,874,956	-				-0.6
4,874,956	-				-0.7
4,874,956	-				-1.1
4,874,967	+				-0.9
4,874,968	-				-1.1
4,874,968	-				+0.2
4,874,975	+				-1.9
4,874,975	+				-2.4
4,874,975	+				-0.8
4,874,975	+				-1.1
4,874,975	+				-1.1
4,874,975	+				-2.1
4,874,975	+				+0.5
4,874,975	+				-0.2
4,874,975	+				+2.9
4,874,975	+				-2.3
4,874,975	+				-0.5
4,874,976	-				-2.5
4,874,976	-				+2.6
4,874,976	-				+2.1
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4,874,976	-				+1.2
4,874,976	-				-3.0
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4,874,979	+				-0.4
4,874,996	+				-0.1
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4,875,005	+				-0.9
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4,875,005	+				-3.3
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4,875,006	-				-3.3
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4,875,138	+		DZA65_RS22540	0.14	-1.1
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4,875,168	+		DZA65_RS22540	0.16	-1.1
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4,875,499	-		DZA65_RS22540	0.48	-1.1
4,875,499	-		DZA65_RS22540	0.48	-2.6
4,875,499	-		DZA65_RS22540	0.48	-1.1
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4,875,513	+		DZA65_RS22540	0.50	-1.9
4,875,513	+		DZA65_RS22540	0.50	+1.5
4,875,513	+		DZA65_RS22540	0.50	-3.3
4,875,514	-		DZA65_RS22540	0.50	-1.8
4,875,514	-		DZA65_RS22540	0.50	-1.9
4,875,514	-		DZA65_RS22540	0.50	-2.0
4,875,514	-		DZA65_RS22540	0.50	-1.0
4,875,514	-		DZA65_RS22540	0.50	+0.9