Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21575

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,665,237	+				+1.2
4,665,237	+				-3.4
4,665,237	+				+0.1
4,665,237	+				+0.6
4,665,237	+				-0.1
4,665,237	+				-3.3
4,665,237	+				-1.6
4,665,238	-				-1.8
4,665,238	-				+0.9
4,665,238	-				-0.8
4,665,238	-				+1.4
4,665,238	-				+4.5
4,665,238	-				+1.2
4,665,238	-				-2.1
4,665,238	-				-1.4
4,665,238	-				+1.2
4,665,238	-				+2.5
4,665,238	-				-1.5
4,665,238	-				+2.2
4,665,238	-				-2.3
4,665,238	-				-1.6
4,665,390	+		DZA65_RS21570	0.22	-3.4
4,665,390	+		DZA65_RS21570	0.22	+1.2
4,665,390	+		DZA65_RS21570	0.22	-1.0
4,665,390	+		DZA65_RS21570	0.22	-0.4
4,665,391	-		DZA65_RS21570	0.22	+0.7
4,665,391	-		DZA65_RS21570	0.22	+0.3
4,665,417	+		DZA65_RS21570	0.25	-0.8
4,665,417	+		DZA65_RS21570	0.25	-0.1
4,665,417	+		DZA65_RS21570	0.25	+1.5
4,665,417	+		DZA65_RS21570	0.25	-1.9
4,665,417	+		DZA65_RS21570	0.25	-3.5
4,665,418	-		DZA65_RS21570	0.25	-1.1
4,665,418	-		DZA65_RS21570	0.25	+0.2
4,665,418	-		DZA65_RS21570	0.25	-0.4
4,665,418	-		DZA65_RS21570	0.25	-2.3
4,665,418	-		DZA65_RS21570	0.25	-0.4
4,665,418	-		DZA65_RS21570	0.25	-1.6
4,665,418	-		DZA65_RS21570	0.25	-0.4
4,665,418	-		DZA65_RS21570	0.25	-0.1
4,665,418	-		DZA65_RS21570	0.25	+2.4
4,665,418	-		DZA65_RS21570	0.25	-0.7
4,665,418	-		DZA65_RS21570	0.25	-1.6
4,665,418	-		DZA65_RS21570	0.25	+1.2
4,665,439	+		DZA65_RS21570	0.27	-1.4
4,665,708	+		DZA65_RS21570	0.58	-4.2
4,665,709	-		DZA65_RS21570	0.58	-3.2
4,665,741	+		DZA65_RS21570	0.61	+2.2
4,665,789	+		DZA65_RS21570	0.67	-2.3
4,665,789	+		DZA65_RS21570	0.67	+0.4
4,665,789	+		DZA65_RS21570	0.67	-0.8
4,665,789	+		DZA65_RS21570	0.67	+1.7
4,665,789	+		DZA65_RS21570	0.67	+0.7
4,665,789	+		DZA65_RS21570	0.67	-0.8
4,665,789	+		DZA65_RS21570	0.67	+0.9
4,665,789	+		DZA65_RS21570	0.67	-1.6
4,665,789	+		DZA65_RS21570	0.67	+2.7
4,665,789	+		DZA65_RS21570	0.67	-0.7
4,665,789	+		DZA65_RS21570	0.67	-2.9
4,665,790	-		DZA65_RS21570	0.67	+0.5
4,665,790	-		DZA65_RS21570	0.67	+1.1
4,665,790	-		DZA65_RS21570	0.67	-1.4
4,665,790	-		DZA65_RS21570	0.67	-0.8
4,665,790	-		DZA65_RS21570	0.67	+1.2
4,665,790	-		DZA65_RS21570	0.67	-2.0
4,665,790	-		DZA65_RS21570	0.67	-1.0
4,665,790	-		DZA65_RS21570	0.67	-0.7
4,665,792	+		DZA65_RS21570	0.67	-0.8
4,665,792	+		DZA65_RS21570	0.67	-1.1
4,665,793	-		DZA65_RS21570	0.67	+0.5
4,665,793	-		DZA65_RS21570	0.67	-0.8
4,665,793	-		DZA65_RS21570	0.67	-0.1
4,665,793	-		DZA65_RS21570	0.67	-2.7
4,665,871	+		DZA65_RS21570	0.76	+0.9
4,665,871	+		DZA65_RS21570	0.76	-1.4
4,665,872	-		DZA65_RS21570	0.76	-0.6
4,665,907	-		DZA65_RS21570	0.80	+4.2
4,665,936	+		DZA65_RS21570	0.84	-3.8
4,665,936	+		DZA65_RS21570	0.84	+1.5
4,665,936	+		DZA65_RS21570	0.84	-1.6
4,665,937	-		DZA65_RS21570	0.84	-0.4
4,665,937	-		DZA65_RS21570	0.84	+1.5
4,665,967	+		DZA65_RS21570	0.87	+1.9
4,665,967	+		DZA65_RS21570	0.87	-0.8
4,665,968	-		DZA65_RS21570	0.87	-1.0
4,666,022	-				+3.5
4,666,095	+				-0.8
4,666,095	+				+1.2
4,666,096	-				+0.9
4,666,096	-				-0.2
4,666,096	-				-0.4
4,666,104	+				-1.0
4,666,135	+				-1.1
4,666,135	+				+1.7
4,666,135	+				-3.9
4,666,136	-				-3.5
4,666,136	-				-0.1
4,666,136	-				-0.9
4,666,136	-				-1.8
4,666,136	-				-1.4
4,666,139	+				+3.1
4,666,139	+				+1.2
4,666,139	+				+0.2
4,666,139	+				-0.4
4,666,139	+				-1.1
4,666,139	+				+0.2
4,666,139	+				+2.1
4,666,139	+				-2.1
4,666,139	+				-1.8
4,666,140	-				-1.4
4,666,140	-				+2.2
4,666,140	-				-1.6
4,666,140	-				+1.2
4,666,140	-				-2.1
4,666,140	-				+0.0
4,666,141	+				-1.1
4,666,142	-				+1.3
4,666,142	-				+0.2
4,666,142	-				+0.2
4,666,142	-				-1.1
4,666,226	+				-2.4
4,666,226	+				-2.0
4,666,226	+				+1.2
4,666,226	+				-0.4
4,666,277	+				-2.3
4,666,277	+				-1.1
4,666,354	+				-0.4
4,666,465	+		DZA65_RS21575	0.27	+0.2
4,666,465	+		DZA65_RS21575	0.27	-2.1
4,666,593	+		DZA65_RS21575	0.40	+0.2
4,666,594	-		DZA65_RS21575	0.41	-0.4
4,666,676	+		DZA65_RS21575	0.49	-0.1
4,666,677	-				-1.8
4,666,846	+		DZA65_RS21575	0.67	-1.8
4,667,050	+		DZA65_RS21575	0.88	-1.6
4,667,051	-		DZA65_RS21575	0.88	+0.6
4,667,051	-		DZA65_RS21575	0.88	+0.6
4,667,051	-		DZA65_RS21575	0.88	-2.3
4,667,051	-		DZA65_RS21575	0.88	-1.8
4,667,061	+				+0.2
4,667,062	-		DZA65_RS21575	0.89	+3.0
4,667,145	+				-1.8
4,667,159	+				-1.8
4,667,183	+				+0.2
4,667,184	-				-2.1
4,667,184	-				+1.0
4,667,190	-				-2.6
4,667,190	-				+2.7
4,667,190	-				+0.2
4,667,207	+				-1.1
4,667,208	-				-0.2
4,667,220	-				-1.5
4,667,249	+				-0.3
4,667,249	+				+0.1
4,667,249	+				-1.6
4,667,249	+				-0.8
4,667,249	+				-3.1
4,667,249	+				-1.1
4,667,249	+				-0.4
4,667,249	+				-1.1
4,667,249	+				-1.6
4,667,249	+				-1.7
4,667,249	+				-1.4
4,667,249	+				+0.5
4,667,249	+				+0.1
4,667,250	-				-3.1
4,667,250	-				+1.4
4,667,250	-				+2.5
4,667,250	-				+0.2
4,667,250	-				+1.4
4,667,250	-				-1.6
4,667,250	-				+2.8
4,667,250	-				-3.1
4,667,250	-				+1.5
4,667,250	-				-0.6
4,667,250	-				-2.0
4,667,250	-				-1.0
4,667,250	-				+1.0
4,667,250	-				-2.4
4,667,252	+				+0.2
4,667,252	+				-0.4
4,667,253	-				-0.8
4,667,253	-				+2.5
4,667,253	-				+1.2
4,667,253	-				-0.8
4,667,254	+				+3.0
4,667,255	-				-2.4
4,667,255	-				-1.4
4,667,315	+				-0.8
4,667,316	-				-1.4
4,667,316	-				-1.4
4,667,317	+				-2.5
4,667,317	+				-1.1
4,667,414	+				-1.1
4,667,414	+				-0.1
4,667,523	-		DZA65_RS21580	0.19	-0.8
4,667,652	-		DZA65_RS21580	0.33	-0.6
4,667,659	+		DZA65_RS21580	0.34	-3.1
4,667,659	+				+3.0
4,667,659	+		DZA65_RS21580	0.34	-1.4
4,667,659	+		DZA65_RS21580	0.34	+1.8
4,667,660	-		DZA65_RS21580	0.34	-1.1
4,667,688	-		DZA65_RS21580	0.37	+0.2
4,667,688	-		DZA65_RS21580	0.37	+1.3
4,667,688	-		DZA65_RS21580	0.37	-1.6
4,667,689	+		DZA65_RS21580	0.37	-0.0
4,667,690	-		DZA65_RS21580	0.37	+0.3
4,667,729	+		DZA65_RS21580	0.42	-1.6
4,667,729	+				+0.9
4,667,729	+		DZA65_RS21580	0.42	-0.8
4,667,729	+		DZA65_RS21580	0.42	-0.8
4,667,729	+		DZA65_RS21580	0.42	-2.3
4,667,730	-		DZA65_RS21580	0.42	-2.5
4,667,730	-		DZA65_RS21580	0.42	-1.8
4,667,730	-		DZA65_RS21580	0.42	-1.4
4,667,730	-		DZA65_RS21580	0.42	-1.8
4,667,730	-		DZA65_RS21580	0.42	-1.1
4,667,730	-		DZA65_RS21580	0.42	-1.4
4,667,896	-		DZA65_RS21580	0.60	+1.2
4,668,041	+		DZA65_RS21580	0.76	-1.6
4,668,041	+		DZA65_RS21580	0.76	-0.8
4,668,041	+		DZA65_RS21580	0.76	-0.8
4,668,041	+		DZA65_RS21580	0.76	-0.4
4,668,041	+		DZA65_RS21580	0.76	-0.8
4,668,041	+		DZA65_RS21580	0.76	-1.4
4,668,041	+		DZA65_RS21580	0.76	-1.1
4,668,041	+		DZA65_RS21580	0.76	+3.5
4,668,042	-		DZA65_RS21580	0.76	+0.7
4,668,042	-		DZA65_RS21580	0.76	+1.2
4,668,042	-		DZA65_RS21580	0.76	-0.5
4,668,042	-		DZA65_RS21580	0.76	-0.4
4,668,042	-		DZA65_RS21580	0.76	+1.0
4,668,042	-		DZA65_RS21580	0.76	+1.2
4,668,042	-		DZA65_RS21580	0.76	+1.2
4,668,042	-		DZA65_RS21580	0.76	+1.7
4,668,042	-		DZA65_RS21580	0.76	-1.1
4,668,042	-		DZA65_RS21580	0.76	-0.1
4,668,071	-		DZA65_RS21580	0.80	-0.4
4,668,143	+		DZA65_RS21580	0.88	-0.1
4,668,158	-		DZA65_RS21580	0.89	+1.6