Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21445

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,636,176	+		DZA65_RS21435	0.74	+2.0
4,636,176	+		DZA65_RS21435	0.74	+0.4
4,636,258	+				-0.1
4,636,259	-				+0.2
4,636,259	-				+1.3
4,636,288	+				+1.9
4,636,336	+				-2.2
4,636,336	+				-1.8
4,636,337	-				-2.1
4,636,340	-				-3.0
4,636,340	-				+0.9
4,636,340	-				-1.7
4,636,340	-				-0.4
4,636,340	-				+1.0
4,636,404	+		DZA65_RS21440	0.18	+1.0
4,636,404	+		DZA65_RS21440	0.18	+0.2
4,636,404	+		DZA65_RS21440	0.18	-0.2
4,636,404	+		DZA65_RS21440	0.18	-1.4
4,636,404	+		DZA65_RS21440	0.18	+0.8
4,636,404	+		DZA65_RS21440	0.18	-1.6
4,636,404	+		DZA65_RS21440	0.18	-2.2
4,636,404	+		DZA65_RS21440	0.18	-1.0
4,636,404	+		DZA65_RS21440	0.18	-2.3
4,636,404	+		DZA65_RS21440	0.18	-0.8
4,636,404	+		DZA65_RS21440	0.18	+2.3
4,636,404	+		DZA65_RS21440	0.18	+0.2
4,636,404	+		DZA65_RS21440	0.18	+1.6
4,636,404	+		DZA65_RS21440	0.18	+0.3
4,636,404	+		DZA65_RS21440	0.18	+0.6
4,636,404	+		DZA65_RS21440	0.18	+0.3
4,636,405	-		DZA65_RS21440	0.18	+1.7
4,636,405	-		DZA65_RS21440	0.18	+0.4
4,636,405	-		DZA65_RS21440	0.18	-1.0
4,636,405	-		DZA65_RS21440	0.18	-0.8
4,636,405	-		DZA65_RS21440	0.18	-0.4
4,636,405	-		DZA65_RS21440	0.18	-2.5
4,636,405	-		DZA65_RS21440	0.18	-3.5
4,636,405	-		DZA65_RS21440	0.18	-0.5
4,636,405	-		DZA65_RS21440	0.18	-2.4
4,636,405	-		DZA65_RS21440	0.18	+0.5
4,636,405	-		DZA65_RS21440	0.18	+1.8
4,636,405	-				+1.2
4,636,405	-		DZA65_RS21440	0.18	-2.6
4,636,405	-		DZA65_RS21440	0.18	+0.6
4,636,405	-		DZA65_RS21440	0.18	-1.2
4,636,405	-		DZA65_RS21440	0.18	+2.2
4,636,405	-		DZA65_RS21440	0.18	-1.4
4,636,405	-		DZA65_RS21440	0.18	-4.2
4,636,405	-		DZA65_RS21440	0.18	+0.9
4,636,407	-		DZA65_RS21440	0.19	-0.4
4,636,407	-		DZA65_RS21440	0.19	+0.3
4,636,440	+		DZA65_RS21440	0.24	-0.3
4,636,440	+		DZA65_RS21440	0.24	-1.8
4,636,440	+		DZA65_RS21440	0.24	-0.6
4,636,440	+		DZA65_RS21440	0.24	-2.0
4,636,441	-		DZA65_RS21440	0.24	+0.8
4,636,490	+		DZA65_RS21440	0.32	-1.2
4,636,491	-		DZA65_RS21440	0.32	-3.5
4,636,510	+		DZA65_RS21440	0.35	-2.3
4,636,510	+		DZA65_RS21440	0.35	-0.0
4,636,510	+		DZA65_RS21440	0.35	-2.4
4,636,511	-		DZA65_RS21440	0.35	-0.8
4,636,511	-		DZA65_RS21440	0.35	-0.4
4,636,511	-		DZA65_RS21440	0.35	+1.2
4,636,686	-		DZA65_RS21440	0.62	+1.0
4,636,686	-		DZA65_RS21440	0.62	+0.4
4,636,780	+		DZA65_RS21440	0.77	+0.2
4,636,781	-		DZA65_RS21440	0.77	+1.2
4,636,844	+		DZA65_RS21440	0.87	+0.3
4,636,845	-		DZA65_RS21440	0.87	-0.8
4,636,845	-		DZA65_RS21440	0.87	-1.4
4,636,845	-		DZA65_RS21440	0.87	-1.8
4,636,845	-		DZA65_RS21440	0.87	-1.4
4,636,857	+		DZA65_RS21440	0.89	+0.1
4,636,926	+				+0.6
4,636,927	-				-2.7
4,636,954	+				-2.5
4,636,954	+				-1.2
4,636,954	+				+1.7
4,636,954	+				-0.7
4,636,954	+				+1.4
4,636,955	-				-0.2
4,636,955	-				+2.0
4,636,955	-				+0.8
4,636,955	-				-0.9
4,636,955	-				+1.6
4,636,955	-				+1.2
4,636,955	-				-0.4
4,636,972	+				-1.8
4,636,972	+				+1.6
4,636,972	+				+0.3
4,636,972	+				-0.8
4,636,972	+				+1.3
4,636,972	+				+0.1
4,636,972	+				+1.5
4,636,972	+				+2.6
4,636,972	+				-0.9
4,636,972	+				+0.2
4,636,972	+				-1.7
4,636,972	+				-2.0
4,636,972	+				-0.4
4,636,972	+				-2.8
4,636,972	+				-2.2
4,636,972	+				-0.8
4,636,972	+				+1.8
4,636,972	+				+0.7
4,636,972	+				+1.8
4,636,972	+				+0.6
4,636,972	+				+1.7
4,636,972	+				-1.0
4,636,972	+				+0.5
4,636,972	+				-1.4
4,636,972	+				-0.1
4,636,972	+				-3.3
4,636,973	-				-0.6
4,636,973	-				-1.6
4,636,973	-				-0.4
4,636,973	-				+1.4
4,636,973	-				+0.3
4,636,973	-				-0.5
4,636,973	-				+2.8
4,636,973	-				+0.7
4,636,974	+				+1.2
4,636,974	+				-3.8
4,636,974	+				+0.2
4,636,974	+				-2.1
4,636,975	-				-0.3
4,636,975	-				-0.2
4,636,984	+				+2.6
4,636,984	+				-1.4
4,636,984	+				+1.5
4,636,984	+				+0.6
4,636,985	-				+0.2
4,636,985	-				-0.4
4,636,985	-				+2.6
4,636,995	+				-0.1
4,636,995	+				-0.8
4,636,995	+				-0.8
4,636,996	-				-0.8
4,636,996	-				-1.8
4,637,015	+				-0.4
4,637,015	+				-1.8
4,637,015	+				-1.2
4,637,016	-				-1.4
4,637,016	-				-0.8
4,637,018	+				-0.9
4,637,018	+				-1.8
4,637,018	+				-1.7
4,637,018	+				-1.6
4,637,084	-				-2.5
4,637,123	+				-1.8
4,637,134	+				-0.4
4,637,145	+				-2.5
4,637,145	+				+3.5
4,637,233	+				-2.5
4,637,244	+				-1.6
4,637,247	+				-1.1
4,637,248	-				-0.4
4,637,346	+		DZA65_RS21445	0.15	+0.2
4,637,347	-		DZA65_RS21445	0.15	+2.4
4,637,347	-		DZA65_RS21445	0.15	-2.1
4,637,347	-		DZA65_RS21445	0.15	-1.6
4,637,501	+		DZA65_RS21445	0.26	-1.4
4,637,583	+		DZA65_RS21445	0.32	-2.4
4,637,584	-		DZA65_RS21445	0.32	-2.1
4,637,622	+		DZA65_RS21445	0.35	+0.2
4,637,677	-		DZA65_RS21445	0.39	-0.4
4,637,805	+		DZA65_RS21445	0.48	-2.5
4,638,100	-		DZA65_RS21445	0.69	-0.8
4,638,168	-		DZA65_RS21445	0.74	-0.4
4,638,183	+		DZA65_RS21445	0.75	+0.2
4,638,183	+		DZA65_RS21445	0.75	-1.4
4,638,184	-		DZA65_RS21445	0.75	+1.2
4,638,184	-		DZA65_RS21445	0.75	-0.8
4,638,188	+		DZA65_RS21445	0.75	-0.4
4,638,438	-				+3.6
4,638,440	+				-2.5
4,638,440	+				-0.8
4,638,441	-				-1.5
4,638,441	-				+0.7
4,638,441	-				+0.3
4,638,567	-				+0.1
4,638,588	+				+1.2
4,638,588	+				-1.8
4,638,644	+				+1.2
4,638,648	+				-0.3
4,638,652	+				-0.8
4,638,669	+				-0.8
4,638,771	+		DZA65_RS21450	0.11	-0.6
4,638,772	-		DZA65_RS21450	0.11	+0.4
4,638,772	-		DZA65_RS21450	0.11	-2.2
4,638,787	+		DZA65_RS21450	0.13	-0.6
4,638,787	+		DZA65_RS21450	0.13	+1.8
4,638,787	+		DZA65_RS21450	0.13	-0.8
4,638,788	-		DZA65_RS21450	0.13	+2.6
4,638,788	-		DZA65_RS21450	0.13	-2.6
4,638,788	-		DZA65_RS21450	0.13	-0.2
4,638,807	+		DZA65_RS21450	0.15	-2.3
4,638,807	+		DZA65_RS21450	0.15	-0.4
4,638,807	+		DZA65_RS21450	0.15	-0.4
4,638,808	-		DZA65_RS21450	0.15	-2.0
4,638,808	-		DZA65_RS21450	0.15	-2.5
4,638,819	+		DZA65_RS21450	0.16	-2.9
4,638,819	+		DZA65_RS21450	0.16	+1.3
4,638,819	+		DZA65_RS21450	0.16	+2.1
4,638,820	-		DZA65_RS21450	0.17	-2.2
4,638,820	-		DZA65_RS21450	0.17	-1.6
4,638,820	-		DZA65_RS21450	0.17	-1.3
4,638,820	-		DZA65_RS21450	0.17	+0.1
4,638,874	+		DZA65_RS21450	0.22	-0.8
4,638,874	+		DZA65_RS21450	0.22	+0.6
4,638,877	+		DZA65_RS21450	0.23	-0.4
4,638,877	+		DZA65_RS21450	0.23	+0.9
4,638,877	+		DZA65_RS21450	0.23	+2.2
4,638,878	-		DZA65_RS21450	0.23	-0.6
4,638,878	-		DZA65_RS21450	0.23	+0.9
4,638,893	+		DZA65_RS21450	0.25	-1.4
4,639,077	+		DZA65_RS21450	0.45	-1.0
4,639,077	+		DZA65_RS21450	0.45	+1.6
4,639,077	+		DZA65_RS21450	0.45	-1.8
4,639,077	+		DZA65_RS21450	0.45	+1.5
4,639,077	+		DZA65_RS21450	0.45	+1.1
4,639,078	-		DZA65_RS21450	0.45	-1.2
4,639,218	+		DZA65_RS21450	0.60	-0.8
4,639,218	+		DZA65_RS21450	0.60	+2.6
4,639,218	+		DZA65_RS21450	0.60	+1.4
4,639,218	+		DZA65_RS21450	0.60	-2.0
4,639,218	+		DZA65_RS21450	0.60	-0.4
4,639,218	+		DZA65_RS21450	0.60	+1.4
4,639,218	+		DZA65_RS21450	0.60	+0.2
4,639,218	+		DZA65_RS21450	0.60	-2.0
4,639,219	-		DZA65_RS21450	0.60	-1.6
4,639,219	-		DZA65_RS21450	0.60	-0.4
4,639,219	-		DZA65_RS21450	0.60	-2.7
4,639,219	-		DZA65_RS21450	0.60	-0.6
4,639,240	+		DZA65_RS21450	0.62	-0.0
4,639,240	+		DZA65_RS21450	0.62	+1.6
4,639,240	+		DZA65_RS21450	0.62	+0.7
4,639,240	+		DZA65_RS21450	0.62	-1.4
4,639,241	-		DZA65_RS21450	0.62	+1.9
4,639,241	-		DZA65_RS21450	0.62	+1.2
4,639,275	+		DZA65_RS21450	0.66	-0.4
4,639,276	-		DZA65_RS21450	0.66	+1.9
4,639,276	-		DZA65_RS21450	0.66	-1.4
4,639,304	-		DZA65_RS21450	0.69	-1.2