Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20795

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,484,326	+		DZA65_RS20790	0.16	-2.0
4,484,326	+		DZA65_RS20790	0.16	+0.6
4,484,326	+				-1.4
4,484,326	+		DZA65_RS20790	0.16	+0.3
4,484,326	+		DZA65_RS20790	0.16	-2.2
4,484,326	+		DZA65_RS20790	0.16	+1.2
4,484,326	+		DZA65_RS20790	0.16	+3.9
4,484,326	+		DZA65_RS20790	0.16	-3.1
4,484,326	+		DZA65_RS20790	0.16	+0.8
4,484,326	+		DZA65_RS20790	0.16	-1.2
4,484,326	+		DZA65_RS20790	0.16	+2.0
4,484,326	+		DZA65_RS20790	0.16	+0.4
4,484,326	+		DZA65_RS20790	0.16	+0.2
4,484,326	+		DZA65_RS20790	0.16	-1.8
4,484,326	+		DZA65_RS20790	0.16	+1.2
4,484,326	+		DZA65_RS20790	0.16	-0.7
4,484,326	+		DZA65_RS20790	0.16	+2.1
4,484,327	-		DZA65_RS20790	0.16	-1.2
4,484,327	-		DZA65_RS20790	0.16	-1.4
4,484,327	-		DZA65_RS20790	0.16	-0.8
4,484,327	-		DZA65_RS20790	0.16	+0.2
4,484,327	-		DZA65_RS20790	0.16	+1.2
4,484,327	-		DZA65_RS20790	0.16	-0.7
4,484,327	-		DZA65_RS20790	0.16	+1.2
4,484,327	-		DZA65_RS20790	0.16	+1.3
4,484,327	-		DZA65_RS20790	0.16	-2.3
4,484,327	-		DZA65_RS20790	0.16	+3.7
4,484,327	-		DZA65_RS20790	0.16	+1.3
4,484,328	+		DZA65_RS20790	0.16	-1.2
4,484,328	+		DZA65_RS20790	0.16	-2.2
4,484,328	+		DZA65_RS20790	0.16	-0.1
4,484,328	+		DZA65_RS20790	0.16	-1.2
4,484,328	+		DZA65_RS20790	0.16	+0.7
4,484,329	-		DZA65_RS20790	0.16	-1.2
4,484,329	-		DZA65_RS20790	0.16	+0.8
4,484,329	-		DZA65_RS20790	0.16	-1.2
4,484,329	-		DZA65_RS20790	0.16	-2.3
4,484,353	-		DZA65_RS20790	0.19	+0.3
4,484,371	+		DZA65_RS20790	0.21	-1.2
4,484,371	+		DZA65_RS20790	0.21	+0.9
4,484,372	-		DZA65_RS20790	0.21	-0.8
4,484,394	+		DZA65_RS20790	0.23	+0.3
4,484,395	-				+0.2
4,484,395	-		DZA65_RS20790	0.23	+1.3
4,484,395	-		DZA65_RS20790	0.23	+1.2
4,484,395	-		DZA65_RS20790	0.23	+0.2
4,484,395	-		DZA65_RS20790	0.23	+0.6
4,484,402	+		DZA65_RS20790	0.24	+0.2
4,484,402	+		DZA65_RS20790	0.24	-2.2
4,484,403	-		DZA65_RS20790	0.24	+1.0
4,484,403	-		DZA65_RS20790	0.24	+0.4
4,484,447	-		DZA65_RS20790	0.29	-1.2
4,484,459	-		DZA65_RS20790	0.31	-2.8
4,484,599	+		DZA65_RS20790	0.46	+2.6
4,484,599	+		DZA65_RS20790	0.46	+1.2
4,484,599	+		DZA65_RS20790	0.46	+0.6
4,484,599	+		DZA65_RS20790	0.46	-3.0
4,484,599	+		DZA65_RS20790	0.46	-0.8
4,484,600	-		DZA65_RS20790	0.46	-1.8
4,484,600	-		DZA65_RS20790	0.46	+0.8
4,484,600	-		DZA65_RS20790	0.46	-2.0
4,484,600	-		DZA65_RS20790	0.46	-1.8
4,484,602	+		DZA65_RS20790	0.47	+3.2
4,484,602	+		DZA65_RS20790	0.47	+0.6
4,484,603	-		DZA65_RS20790	0.47	-1.7
4,484,603	-		DZA65_RS20790	0.47	+0.5
4,484,603	-		DZA65_RS20790	0.47	+1.2
4,484,646	-		DZA65_RS20790	0.51	-1.8
4,484,646	-		DZA65_RS20790	0.51	-1.8
4,484,646	-		DZA65_RS20790	0.51	-1.8
4,484,646	-		DZA65_RS20790	0.51	+0.3
4,484,692	+		DZA65_RS20790	0.57	-0.8
4,484,693	-		DZA65_RS20790	0.57	-2.0
4,484,776	+		DZA65_RS20790	0.66	+0.9
4,484,778	+		DZA65_RS20790	0.66	-2.4
4,484,778	+		DZA65_RS20790	0.66	-0.9
4,484,778	+		DZA65_RS20790	0.66	-2.4
4,484,778	+		DZA65_RS20790	0.66	-2.2
4,484,778	+		DZA65_RS20790	0.66	-0.8
4,484,778	+		DZA65_RS20790	0.66	+1.2
4,484,778	+		DZA65_RS20790	0.66	-0.0
4,484,778	+		DZA65_RS20790	0.66	-0.8
4,484,778	+		DZA65_RS20790	0.66	-0.4
4,484,778	+		DZA65_RS20790	0.66	+1.3
4,484,778	+		DZA65_RS20790	0.66	-2.2
4,484,779	-		DZA65_RS20790	0.66	-0.2
4,484,779	-		DZA65_RS20790	0.66	-0.8
4,484,779	-		DZA65_RS20790	0.66	+0.2
4,484,779	-		DZA65_RS20790	0.66	+2.7
4,484,779	-		DZA65_RS20790	0.66	+0.2
4,484,779	-		DZA65_RS20790	0.66	-1.2
4,484,779	-		DZA65_RS20790	0.66	-0.4
4,484,838	-		DZA65_RS20790	0.73	-1.4
4,484,838	-		DZA65_RS20790	0.73	-2.2
4,484,911	+		DZA65_RS20790	0.81	-3.9
4,484,911	+		DZA65_RS20790	0.81	+1.7
4,484,911	+		DZA65_RS20790	0.81	-2.2
4,484,912	-		DZA65_RS20790	0.81	-1.4
4,484,912	-		DZA65_RS20790	0.81	-2.2
4,484,912	-		DZA65_RS20790	0.81	+1.7
4,484,933	+		DZA65_RS20790	0.84	+1.0
4,484,933	+		DZA65_RS20790	0.84	-1.8
4,484,933	+		DZA65_RS20790	0.84	-2.2
4,484,933	+		DZA65_RS20790	0.84	-0.3
4,484,933	+		DZA65_RS20790	0.84	+2.2
4,484,933	+		DZA65_RS20790	0.84	+1.2
4,484,933	+		DZA65_RS20790	0.84	+0.2
4,484,933	+		DZA65_RS20790	0.84	+2.2
4,484,933	+		DZA65_RS20790	0.84	-1.0
4,484,933	+		DZA65_RS20790	0.84	+0.6
4,484,933	+		DZA65_RS20790	0.84	-1.8
4,484,934	-		DZA65_RS20790	0.84	+0.2
4,484,934	-		DZA65_RS20790	0.84	-0.8
4,484,934	-		DZA65_RS20790	0.84	-1.2
4,484,934	-		DZA65_RS20790	0.84	-1.2
4,484,934	-		DZA65_RS20790	0.84	+2.2
4,484,934	-				-0.8
4,484,934	-		DZA65_RS20790	0.84	-0.3
4,484,939	-		DZA65_RS20790	0.84	+1.0
4,484,939	-		DZA65_RS20790	0.84	+0.2
4,484,948	+		DZA65_RS20790	0.85	+0.4
4,485,014	+				-0.1
4,485,015	-				+0.2
4,485,031	+				+1.5
4,485,032	-				-0.7
4,485,032	-				+1.2
4,485,072	+				+0.6
4,485,096	+				-1.7
4,485,106	+				+2.1
4,485,106	+				-1.2
4,485,106	+				+3.8
4,485,106	+				-2.2
4,485,107	-				-3.8
4,485,124	+				-2.1
4,485,124	+				+0.3
4,485,124	+				+0.2
4,485,125	-				+0.2
4,485,125	-				-0.6
4,485,125	-				-2.0
4,485,126	+				-2.0
4,485,126	+				-1.0
4,485,126	+				-0.4
4,485,126	+				-0.5
4,485,126	+				+0.9
4,485,126	+				-0.0
4,485,126	+				+0.6
4,485,126	+				+3.2
4,485,126	+				-2.1
4,485,126	+				+0.2
4,485,127	-				-0.8
4,485,127	-				-2.2
4,485,127	-				+2.9
4,485,127	-				-0.8
4,485,127	-				+0.8
4,485,127	-				+0.2
4,485,127	-				-2.0
4,485,146	+				+0.2
4,485,146	+				-1.8
4,485,146	+				+1.9
4,485,146	+				-2.7
4,485,151	+				+1.9
4,485,151	+				-0.3
4,485,151	+				-0.4
4,485,152	-				+1.6
4,485,152	-				-0.4
4,485,152	-				-1.7
4,485,192	+				-0.4
4,485,193	-				-1.7
4,485,197	+				-1.2
4,485,197	+				-1.7
4,485,197	+				-0.4
4,485,197	+				+0.8
4,485,197	+				+1.6
4,485,197	+				+1.7
4,485,197	+				+2.5
4,485,198	-				-0.8
4,485,201	+				-0.8
4,485,201	+				-1.2
4,485,201	+				-1.2
4,485,201	+				+1.1
4,485,201	+				+1.4
4,485,201	+				-2.9
4,485,201	+				-0.4
4,485,201	+				-0.2
4,485,201	+				-1.7
4,485,201	+				-0.1
4,485,202	-				+0.6
4,485,202	-				+2.4
4,485,202	-				+0.6
4,485,202	-				-1.7
4,485,202	-				+1.2
4,485,202	-				+0.8
4,485,202	-				+0.6
4,485,202	-				-1.4
4,485,202	-				+2.6
4,485,257	+				-0.8
4,485,263	+				-0.0
4,485,263	+				-0.4
4,485,264	-				+0.2
4,485,264	-				-1.2
4,485,264	-				+1.7
4,485,266	-				+0.2
4,485,599	-		DZA65_RS20795	0.16	-0.4
4,485,668	+		DZA65_RS20795	0.19	-0.4
4,485,669	-		DZA65_RS20795	0.19	-2.9
4,485,669	-		DZA65_RS20795	0.19	-1.2
4,485,669	-		DZA65_RS20795	0.19	-1.7
4,485,683	+		DZA65_RS20795	0.20	-1.7
4,485,683	+		DZA65_RS20795	0.20	+1.5
4,485,684	-		DZA65_RS20795	0.20	+2.4
4,485,684	-		DZA65_RS20795	0.20	-0.7
4,485,728	+		DZA65_RS20795	0.21	+3.0
4,485,728	+				-0.8
4,485,729	-		DZA65_RS20795	0.21	-1.7
4,485,818	+		DZA65_RS20795	0.25	+0.2
4,485,818	+		DZA65_RS20795	0.25	-1.3
4,485,824	+		DZA65_RS20795	0.25	-1.0
4,485,825	-		DZA65_RS20795	0.25	-1.8
4,485,881	+		DZA65_RS20795	0.27	+3.4
4,485,882	-		DZA65_RS20795	0.27	-0.8
4,485,886	+		DZA65_RS20795	0.28	+3.3
4,485,887	-		DZA65_RS20795	0.28	-2.0
4,485,899	+		DZA65_RS20795	0.28	-0.4
4,485,900	-		DZA65_RS20795	0.28	-0.4
4,485,935	+		DZA65_RS20795	0.29	-0.8
4,485,968	+		DZA65_RS20795	0.31	-0.8
4,485,968	+		DZA65_RS20795	0.31	+2.0
4,485,968	+		DZA65_RS20795	0.31	-1.1
4,485,968	+		DZA65_RS20795	0.31	-1.3
4,485,968	+		DZA65_RS20795	0.31	-0.4
4,485,968	+		DZA65_RS20795	0.31	-1.4
4,485,968	+		DZA65_RS20795	0.31	-0.2
4,485,968	+		DZA65_RS20795	0.31	-0.8
4,485,969	-				-0.3
4,485,969	-				-1.8
4,485,969	-		DZA65_RS20795	0.31	-0.4
4,485,969	-		DZA65_RS20795	0.31	-0.8
4,485,969	-		DZA65_RS20795	0.31	-1.2
4,485,969	-		DZA65_RS20795	0.31	-0.7
4,485,969	-		DZA65_RS20795	0.31	+0.2
4,485,969	-		DZA65_RS20795	0.31	-0.8
4,486,022	+		DZA65_RS20795	0.33	+1.2
4,486,022	+		DZA65_RS20795	0.33	-0.8
4,486,022	+		DZA65_RS20795	0.33	+0.9
4,486,022	+		DZA65_RS20795	0.33	-1.2
4,486,023	-		DZA65_RS20795	0.33	+2.1
4,486,023	-		DZA65_RS20795	0.33	-1.7
4,486,023	-		DZA65_RS20795	0.33	-2.8
4,486,025	-		DZA65_RS20795	0.33	-1.2
4,486,025	-		DZA65_RS20795	0.33	+0.2
4,486,043	+		DZA65_RS20795	0.34	-1.8
4,486,093	+		DZA65_RS20795	0.36	-1.8
4,486,093	+		DZA65_RS20795	0.36	-2.8
4,486,094	-		DZA65_RS20795	0.36	-1.4
4,486,109	+		DZA65_RS20795	0.36	+1.2
4,486,109	+		DZA65_RS20795	0.36	-1.2
4,486,110	-		DZA65_RS20795	0.36	-1.6
4,486,183	+		DZA65_RS20795	0.39	-1.4
4,486,184	-		DZA65_RS20795	0.39	-1.7
4,486,509	+		DZA65_RS20795	0.52	+2.5
4,486,595	+		DZA65_RS20795	0.55	-1.7
4,486,595	+		DZA65_RS20795	0.55	-2.4
4,486,595	+		DZA65_RS20795	0.55	-0.3
4,486,595	+		DZA65_RS20795	0.55	-1.2
4,486,595	+		DZA65_RS20795	0.55	+2.5
4,486,595	+		DZA65_RS20795	0.55	+0.8
4,486,595	+		DZA65_RS20795	0.55	+1.0
4,486,596	-		DZA65_RS20795	0.55	-1.4
4,486,596	-		DZA65_RS20795	0.55	+1.4
4,486,631	-				-0.2
4,486,633	+		DZA65_RS20795	0.57	-1.7
4,486,633	+		DZA65_RS20795	0.57	+1.2
4,486,633	+		DZA65_RS20795	0.57	-0.8
4,486,633	+				-1.2
4,486,633	+		DZA65_RS20795	0.57	-1.2
4,486,634	-		DZA65_RS20795	0.57	-1.4
4,486,712	+		DZA65_RS20795	0.60	+0.7
4,486,800	-		DZA65_RS20795	0.63	-1.5
4,486,800	-		DZA65_RS20795	0.63	+0.2
4,486,843	+		DZA65_RS20795	0.65	-0.2
4,486,843	+		DZA65_RS20795	0.65	-1.4
4,486,844	-		DZA65_RS20795	0.65	-1.4
4,486,852	+				-1.7
4,486,885	+		DZA65_RS20795	0.67	-2.7
4,486,899	+		DZA65_RS20795	0.67	-2.0
4,486,899	+		DZA65_RS20795	0.67	-2.2
4,486,900	-		DZA65_RS20795	0.67	-0.7
4,486,949	+		DZA65_RS20795	0.69	-0.1
4,486,949	+		DZA65_RS20795	0.69	-1.4
4,486,949	+		DZA65_RS20795	0.69	-0.4
4,486,981	+		DZA65_RS20795	0.70	+3.7
4,486,984	+		DZA65_RS20795	0.70	-1.2
4,486,985	-		DZA65_RS20795	0.70	-0.4
4,486,985	-		DZA65_RS20795	0.70	+4.2
4,487,042	+		DZA65_RS20795	0.73	-1.8
4,487,042	+		DZA65_RS20795	0.73	-1.2
4,487,043	-		DZA65_RS20795	0.73	+2.8
4,487,043	-		DZA65_RS20795	0.73	+0.2
4,487,043	-		DZA65_RS20795	0.73	-2.9
4,487,245	+		DZA65_RS20795	0.81	-3.2
4,487,245	+		DZA65_RS20795	0.81	-2.2
4,487,246	-		DZA65_RS20795	0.81	-2.3
4,487,246	-		DZA65_RS20795	0.81	-1.8
4,487,246	-		DZA65_RS20795	0.81	-1.2
4,487,246	-		DZA65_RS20795	0.81	-2.2
4,487,246	-		DZA65_RS20795	0.81	-1.7
4,487,246	-		DZA65_RS20795	0.81	-1.2
4,487,323	+		DZA65_RS20795	0.84	-1.2
4,487,341	+		DZA65_RS20795	0.84	+1.5
4,487,341	+		DZA65_RS20795	0.84	-1.3
4,487,341	+		DZA65_RS20795	0.84	+2.4
4,487,647	+				+0.2
4,487,708	-				-1.5
4,487,753	+				-1.0
4,487,770	+				-1.2
4,487,770	+				+1.5
4,487,770	+				-0.8
4,487,770	+				-0.4
4,487,770	+				-1.2
4,487,770	+				+4.0
4,487,771	-				+1.5
4,487,771	-				+1.8
4,487,771	-				+0.7
4,487,771	-				-0.8
4,487,771	-				-0.4
4,487,771	-				-1.4
4,487,787	+				+1.2
4,487,787	+				+2.8
4,487,787	+				+2.3
4,487,787	+				-1.4
4,487,787	+				-2.7
4,487,787	+				+0.2
4,487,788	-				+1.3
4,487,796	-				-0.9
4,487,805	-				-1.4
4,487,805	-				+2.1
4,487,805	-				-1.7
4,487,805	-				-0.8
4,487,821	+				+0.2
4,487,821	+				-0.8
4,487,821	+				-0.1
4,487,821	+				-0.8
4,487,821	+				+0.2
4,487,822	-				-2.5
4,487,822	-				+2.2
4,487,822	-				-1.8
4,487,822	-				+0.8
4,487,822	-				+0.4
4,487,830	-				+2.0
4,487,838	+				-2.0
4,487,838	+				-1.9
4,487,839	-				-2.2
4,487,839	-				-1.4
4,487,839	-				-1.4
4,487,839	-				-1.4
4,487,839	-				+0.2
4,487,847	-				-0.3
4,487,855	+				-1.4
4,487,855	+				-2.2
4,487,855	+				-3.2
4,487,863	+				-0.2
4,487,864	-				-1.4
4,487,864	-				-0.7
4,487,910	-				-0.1
4,487,943	-				-1.4
4,488,126	+		DZA65_RS20800	0.34	+0.5
4,488,126	+		DZA65_RS20800	0.34	-0.8
4,488,127	-		DZA65_RS20800	0.34	-1.8
4,488,127	-		DZA65_RS20800	0.34	+0.9
4,488,247	+		DZA65_RS20800	0.55	-1.7
4,488,248	-		DZA65_RS20800	0.56	-1.2
4,488,248	-		DZA65_RS20800	0.56	-1.7
4,488,248	-		DZA65_RS20800	0.56	-0.2
4,488,248	-		DZA65_RS20800	0.56	+0.9
4,488,275	+		DZA65_RS20800	0.61	-1.8
4,488,276	-		DZA65_RS20800	0.61	+0.8
4,488,296	+		DZA65_RS20800	0.64	+2.6
4,488,369	+		DZA65_RS20800	0.78	+0.9
4,488,369	+		DZA65_RS20800	0.78	+0.9
4,488,369	+		DZA65_RS20800	0.78	-1.2
4,488,369	+		DZA65_RS20800	0.78	-0.6
4,488,369	+		DZA65_RS20800	0.78	-2.2
4,488,369	+		DZA65_RS20800	0.78	-1.2
4,488,370	-		DZA65_RS20800	0.78	+0.2
4,488,370	-		DZA65_RS20800	0.78	-0.8
4,488,370	-				+2.4
4,488,370	-		DZA65_RS20800	0.78	+1.0
4,488,370	-		DZA65_RS20800	0.78	-1.3
4,488,370	-		DZA65_RS20800	0.78	-1.3
4,488,370	-		DZA65_RS20800	0.78	-1.4
4,488,370	-		DZA65_RS20800	0.78	+0.2
4,488,377	+		DZA65_RS20800	0.79	+1.2
4,488,378	-		DZA65_RS20800	0.79	-1.7
4,488,399	+		DZA65_RS20800	0.83	+2.7
4,488,400	-		DZA65_RS20800	0.83	-2.8
4,488,400	-		DZA65_RS20800	0.83	-2.5
4,488,400	-		DZA65_RS20800	0.83	-2.5
4,488,400	-		DZA65_RS20800	0.83	+0.5
4,488,483	+				-0.8
4,488,483	+				-0.1
4,488,484	-				-1.9
4,488,486	+				+2.1
4,488,486	+				-1.4
4,488,486	+				-1.2
4,488,487	-				+0.9
4,488,487	-				-0.4
4,488,487	-				+1.9
4,488,487	-				+1.0
4,488,487	-				+2.6
4,488,487	-				-2.2
4,488,502	+				+3.4
4,488,502	+				+2.6
4,488,502	+				+1.7
4,488,503	-				+2.6
4,488,503	-				-0.8
4,488,503	-				+2.3
4,488,503	-				+1.2
4,488,503	-				-1.7
4,488,504	+				+2.7
4,488,524	+				-1.3
4,488,525	-				-1.4
4,488,525	-				+2.1
4,488,525	-				+1.0
4,488,525	-				+1.3
4,488,582	-				-1.1
4,488,588	+				+0.2
4,488,589	-				+3.6
4,488,589	-				+1.2
4,488,589	-				+0.9
4,488,589	-				+2.0
4,488,613	-				-1.6
4,488,618	+				-0.2
4,488,618	+				-1.2
4,488,619	-				+0.8
4,488,636	+				-1.4
4,488,636	+				-1.9
4,488,637	-				+3.4
4,488,651	-				+0.2
4,488,670	+				+3.8
4,488,670	+				-0.6
4,488,672	-				-3.2
4,488,697	+				+1.9
4,488,698	-				-2.8
4,488,704	+				-0.5
4,488,705	-				+0.6
4,488,705	-				-0.8
4,488,705	-				+2.4
4,488,705	-				-1.7
4,488,730	-				+3.7