Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20185

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,373,680	+		DZA65_RS20180	0.44	+0.0
4,373,725	+		DZA65_RS20180	0.47	+1.5
4,373,725	+		DZA65_RS20180	0.47	-0.2
4,373,725	+		DZA65_RS20180	0.47	-1.1
4,373,725	+		DZA65_RS20180	0.47	-1.2
4,373,725	+		DZA65_RS20180	0.47	-0.9
4,373,726	-		DZA65_RS20180	0.47	+1.4
4,373,726	-		DZA65_RS20180	0.47	-1.2
4,373,726	-		DZA65_RS20180	0.47	+1.5
4,373,726	-		DZA65_RS20180	0.47	-2.3
4,373,726	-		DZA65_RS20180	0.47	-0.2
4,373,790	+		DZA65_RS20180	0.51	-2.2
4,373,791	-		DZA65_RS20180	0.51	+1.8
4,373,791	-		DZA65_RS20180	0.51	+2.1
4,373,795	+		DZA65_RS20180	0.51	-0.7
4,373,795	+		DZA65_RS20180	0.51	-0.2
4,373,795	+		DZA65_RS20180	0.51	-3.2
4,373,795	+		DZA65_RS20180	0.51	+0.1
4,373,795	+		DZA65_RS20180	0.51	+0.2
4,373,795	+		DZA65_RS20180	0.51	-1.7
4,373,795	+		DZA65_RS20180	0.51	+0.1
4,373,795	+		DZA65_RS20180	0.51	-2.5
4,373,795	+		DZA65_RS20180	0.51	-0.2
4,373,796	-		DZA65_RS20180	0.51	+1.9
4,373,796	-		DZA65_RS20180	0.51	-2.6
4,373,796	-		DZA65_RS20180	0.51	-1.7
4,373,796	-		DZA65_RS20180	0.51	-1.0
4,373,796	-		DZA65_RS20180	0.51	-1.9
4,373,796	-		DZA65_RS20180	0.51	-2.5
4,373,800	-		DZA65_RS20180	0.51	+2.1
4,373,821	+		DZA65_RS20180	0.52	-0.7
4,373,822	-		DZA65_RS20180	0.52	-1.5
4,373,855	+		DZA65_RS20180	0.54	+0.5
4,373,855	+		DZA65_RS20180	0.54	-1.9
4,373,856	-		DZA65_RS20180	0.54	-0.9
4,373,896	+		DZA65_RS20180	0.56	+0.7
4,373,896	+		DZA65_RS20180	0.56	-0.9
4,373,896	+		DZA65_RS20180	0.56	+0.3
4,373,896	+		DZA65_RS20180	0.56	+0.5
4,373,896	+		DZA65_RS20180	0.56	+1.1
4,373,896	+		DZA65_RS20180	0.56	+3.1
4,373,897	-		DZA65_RS20180	0.56	-0.9
4,373,897	-		DZA65_RS20180	0.56	+1.3
4,373,897	-		DZA65_RS20180	0.56	+1.7
4,373,897	-		DZA65_RS20180	0.56	+2.0
4,373,897	-		DZA65_RS20180	0.56	-1.5
4,373,897	-		DZA65_RS20180	0.56	-0.7
4,373,950	+		DZA65_RS20180	0.59	-0.0
4,373,950	+		DZA65_RS20180	0.59	-1.7
4,373,950	+		DZA65_RS20180	0.59	+1.1
4,373,950	+		DZA65_RS20180	0.59	+1.5
4,373,950	+		DZA65_RS20180	0.59	+0.4
4,373,951	-		DZA65_RS20180	0.59	+1.4
4,373,951	-		DZA65_RS20180	0.59	-0.7
4,373,951	-		DZA65_RS20180	0.59	+3.4
4,373,951	-		DZA65_RS20180	0.59	-1.5
4,373,956	-		DZA65_RS20180	0.60	+2.4
4,374,276	+		DZA65_RS20180	0.78	-1.7
4,374,277	-		DZA65_RS20180	0.78	+1.1
4,374,280	+		DZA65_RS20180	0.78	-2.2
4,374,280	+		DZA65_RS20180	0.78	-1.2
4,374,280	+		DZA65_RS20180	0.78	+0.5
4,374,281	-		DZA65_RS20180	0.78	-2.0
4,374,281	-		DZA65_RS20180	0.78	+0.8
4,374,281	-		DZA65_RS20180	0.78	-2.1
4,374,281	-		DZA65_RS20180	0.78	-1.7
4,374,374	+		DZA65_RS20180	0.83	+2.8
4,374,374	+		DZA65_RS20180	0.83	-0.7
4,374,374	+		DZA65_RS20180	0.83	+1.3
4,374,375	-		DZA65_RS20180	0.83	+0.8
4,374,394	+		DZA65_RS20180	0.84	-0.5
4,374,394	+		DZA65_RS20180	0.84	+0.1
4,374,395	-		DZA65_RS20180	0.84	+0.8
4,374,395	-		DZA65_RS20180	0.84	+1.7
4,374,395	-		DZA65_RS20180	0.84	-0.5
4,374,395	-		DZA65_RS20180	0.84	-1.5
4,374,395	-		DZA65_RS20180	0.84	-2.2
4,374,435	+		DZA65_RS20180	0.86	+1.0
4,374,435	+		DZA65_RS20180	0.86	+0.1
4,374,435	+		DZA65_RS20180	0.86	+3.7
4,374,435	+		DZA65_RS20180	0.86	-0.5
4,374,435	+		DZA65_RS20180	0.86	-0.5
4,374,435	+		DZA65_RS20180	0.86	+1.0
4,374,435	+		DZA65_RS20180	0.86	+0.9
4,374,436	-		DZA65_RS20180	0.86	+2.1
4,374,436	-		DZA65_RS20180	0.86	+1.7
4,374,436	-		DZA65_RS20180	0.86	+0.6
4,374,436	-		DZA65_RS20180	0.86	-0.0
4,374,547	+				-2.3
4,374,547	+				+1.1
4,374,547	+				+1.7
4,374,548	-				+0.6
4,374,548	-				+1.5
4,374,548	-				-1.7
4,374,548	-				-1.2
4,374,548	-				+1.1
4,374,577	+				-0.3
4,374,577	+				-1.2
4,374,577	+				+1.3
4,374,622	+				-0.5
4,374,623	-				+1.4
4,374,679	+				+0.1
4,374,679	+				-1.5
4,374,680	-				+2.9
4,374,712	+				-1.2
4,374,749	+		DZA65_RS20185	0.11	+2.4
4,374,749	+		DZA65_RS20185	0.11	+2.7
4,374,749	+		DZA65_RS20185	0.11	-0.9
4,374,749	+		DZA65_RS20185	0.11	-0.9
4,374,749	+		DZA65_RS20185	0.11	+0.4
4,374,749	+		DZA65_RS20185	0.11	-0.5
4,374,749	+		DZA65_RS20185	0.11	-0.2
4,374,749	+		DZA65_RS20185	0.11	-2.3
4,374,749	+		DZA65_RS20185	0.11	-1.5
4,374,749	+		DZA65_RS20185	0.11	+0.8
4,374,750	-		DZA65_RS20185	0.11	-1.7
4,374,750	-		DZA65_RS20185	0.11	-0.7
4,374,750	-		DZA65_RS20185	0.11	+4.0
4,374,750	-		DZA65_RS20185	0.11	+0.1
4,374,750	-		DZA65_RS20185	0.11	-1.8
4,374,750	-		DZA65_RS20185	0.11	-2.8
4,374,761	+		DZA65_RS20185	0.12	-0.9
4,374,761	+		DZA65_RS20185	0.12	+0.2
4,374,761	+		DZA65_RS20185	0.12	-1.7
4,374,762	-		DZA65_RS20185	0.12	-2.3
4,374,762	-		DZA65_RS20185	0.12	+0.1
4,374,762	-		DZA65_RS20185	0.12	+1.9
4,374,763	+		DZA65_RS20185	0.13	+1.3
4,374,764	-		DZA65_RS20185	0.13	-1.2
4,374,797	+		DZA65_RS20185	0.17	+2.0
4,374,797	+		DZA65_RS20185	0.17	-2.2
4,374,798	-		DZA65_RS20185	0.17	+0.5
4,374,798	-		DZA65_RS20185	0.17	+1.4
4,374,831	-		DZA65_RS20185	0.22	+1.1
4,374,904	+		DZA65_RS20185	0.32	+0.6
4,374,904	+		DZA65_RS20185	0.32	+0.1
4,374,904	+		DZA65_RS20185	0.32	-1.2
4,374,905	-		DZA65_RS20185	0.32	-1.9
4,374,905	-		DZA65_RS20185	0.32	-2.5
4,374,905	-		DZA65_RS20185	0.32	-1.0
4,374,923	+		DZA65_RS20185	0.34	+2.3
4,374,924	-		DZA65_RS20185	0.34	+0.9
4,375,028	+		DZA65_RS20185	0.49	+0.1
4,375,028	+		DZA65_RS20185	0.49	-1.7
4,375,028	+		DZA65_RS20185	0.49	-2.2
4,375,028	+		DZA65_RS20185	0.49	+2.6
4,375,028	+		DZA65_RS20185	0.49	-1.5
4,375,029	-		DZA65_RS20185	0.49	+0.1
4,375,029	-		DZA65_RS20185	0.49	+0.8
4,375,029	-		DZA65_RS20185	0.49	-1.5
4,375,029	-		DZA65_RS20185	0.49	+3.4
4,375,029	-		DZA65_RS20185	0.49	-0.9
4,375,029	-		DZA65_RS20185	0.49	-1.1
4,375,097	+		DZA65_RS20185	0.58	-1.9
4,375,097	+		DZA65_RS20185	0.58	-0.7
4,375,097	+		DZA65_RS20185	0.58	+0.9
4,375,097	+		DZA65_RS20185	0.58	-0.7
4,375,097	+		DZA65_RS20185	0.58	+0.1
4,375,098	-		DZA65_RS20185	0.58	-2.6
4,375,098	-		DZA65_RS20185	0.58	+0.4
4,375,098	-		DZA65_RS20185	0.58	-1.7
4,375,098	-		DZA65_RS20185	0.58	+1.1
4,375,136	+		DZA65_RS20185	0.63	+1.9
4,375,136	+		DZA65_RS20185	0.63	+1.2
4,375,137	-		DZA65_RS20185	0.63	+0.6
4,375,285	+		DZA65_RS20185	0.84	+2.7
4,375,285	+		DZA65_RS20185	0.84	-1.0
4,375,286	-		DZA65_RS20185	0.84	-2.5
4,375,298	+		DZA65_RS20185	0.85	-0.9
4,375,383	+				+1.1
4,375,383	+				-0.2
4,375,383	+				+1.4
4,375,384	-				-1.5
4,375,392	+				-2.3
4,375,392	+				-1.7
4,375,392	+				-0.5
4,375,392	+				-1.2
4,375,392	+				-0.5
4,375,392	+				+0.1
4,375,392	+				-0.1
4,375,392	+				+1.5
4,375,392	+				+1.2
4,375,392	+				-0.9
4,375,392	+				+0.8
4,375,393	-				+1.1
4,375,393	-				+3.1
4,375,393	-				+1.1
4,375,393	-				-1.8
4,375,393	-				-0.9
4,375,393	-				-0.5
4,375,393	-				-2.2
4,375,393	-				+1.1
4,375,403	+				+2.0
4,375,403	+				-0.2
4,375,432	+				+0.6
4,375,432	+				+3.3
4,375,432	+				+0.1
4,375,433	-				+0.4
4,375,439	+				+1.1
4,375,439	+				+2.1
4,375,439	+				-0.5
4,375,439	+				+1.1
4,375,439	+				+0.5
4,375,440	-				+0.1
4,375,440	-				-2.0
4,375,440	-				-0.1
4,375,440	-				-0.1
4,375,440	-				-2.3
4,375,440	-				+1.1
4,375,493	+		DZA65_RS20190	0.19	+0.1
4,375,493	+		DZA65_RS20190	0.19	+0.1
4,375,493	+		DZA65_RS20190	0.19	+1.8
4,375,493	+		DZA65_RS20190	0.19	+1.1
4,375,493	+		DZA65_RS20190	0.19	-0.5
4,375,493	+		DZA65_RS20190	0.19	+1.7
4,375,494	-		DZA65_RS20190	0.19	-1.3
4,375,494	-		DZA65_RS20190	0.19	+1.2
4,375,494	-		DZA65_RS20190	0.19	-0.9
4,375,494	-		DZA65_RS20190	0.19	-0.5
4,375,494	-		DZA65_RS20190	0.19	+0.7
4,375,494	-		DZA65_RS20190	0.19	-1.5
4,375,494	-		DZA65_RS20190	0.19	+0.9
4,375,495	+		DZA65_RS20190	0.19	+4.5
4,375,496	-		DZA65_RS20190	0.20	-0.6
4,375,623	+		DZA65_RS20190	0.52	-1.5
4,375,623	+		DZA65_RS20190	0.52	+1.6
4,375,623	+		DZA65_RS20190	0.52	+2.1
4,375,623	+		DZA65_RS20190	0.52	+0.3
4,375,637	-		DZA65_RS20190	0.55	+1.1
4,375,637	-		DZA65_RS20190	0.55	+2.4
4,375,637	-		DZA65_RS20190	0.55	+0.7
4,375,637	-		DZA65_RS20190	0.55	-2.5
4,375,637	-		DZA65_RS20190	0.55	-1.7
4,375,706	-		DZA65_RS20190	0.73	-1.5
4,375,706	-		DZA65_RS20190	0.73	+2.5
4,375,978	+		DZA65_RS20195	0.42	+1.3
4,375,978	+		DZA65_RS20195	0.42	+0.1
4,375,978	+		DZA65_RS20195	0.42	-0.5
4,375,979	-		DZA65_RS20195	0.42	-1.2
4,375,979	-		DZA65_RS20195	0.42	-1.7
4,375,979	-		DZA65_RS20195	0.42	+0.7
4,375,979	-		DZA65_RS20195	0.42	+2.1
4,375,979	-		DZA65_RS20195	0.42	+1.7
4,376,070	+		DZA65_RS20195	0.68	-2.2
4,376,071	-		DZA65_RS20195	0.68	-0.0
4,376,071	-		DZA65_RS20195	0.68	-0.2
4,376,128	+		DZA65_RS20195	0.84	-0.6
4,376,128	+		DZA65_RS20195	0.84	-1.7
4,376,160	+				-2.6
4,376,160	+				-0.9
4,376,161	-				-3.3
4,376,174	+				+0.1
4,376,174	+				+1.8
4,376,174	+				+0.8
4,376,174	+				-0.9
4,376,175	-				+0.4
4,376,175	-				+0.8
4,376,182	+				+0.5
4,376,182	+				+0.6
4,376,182	+				-1.9
4,376,182	+				+3.0
4,376,182	+				-1.9
4,376,182	+				+0.6
4,376,182	+				+0.8
4,376,182	+				-1.9
4,376,182	+				+0.1
4,376,182	+				-1.9
4,376,183	-				+0.6
4,376,183	-				+0.5
4,376,183	-				-0.5
4,376,183	-				+0.1
4,376,183	-				+1.3
4,376,183	-				-2.0
4,376,183	-				-1.3
4,376,183	-				-0.5
4,376,183	-				+3.2
4,376,183	-				-2.3
4,376,190	+				-0.7
4,376,190	+				-1.2
4,376,190	+				-0.0
4,376,230	+				-1.5
4,376,230	+				+2.4
4,376,231	-				-2.6
4,376,231	-				-1.7
4,376,273	+				+0.1
4,376,273	+				+1.3
4,376,273	+				+1.4
4,376,273	+				+1.1
4,376,274	-				-1.2
4,376,274	-				-2.7
4,376,274	-				-1.5
4,376,290	+				+1.5
4,376,325	-				-3.3
4,376,342	+				-1.0
4,376,342	+				+1.1
4,376,343	-				+1.2
4,376,343	-				-1.7
4,376,343	-				-0.9
4,376,343	-				-2.7
4,376,359	+				+2.3
4,376,359	+				+2.1
4,376,360	-				+1.1
4,376,394	+				-3.4
4,376,394	+				+1.1
4,376,395	-				-1.2
4,376,395	-				-0.5
4,376,395	-				-1.3