Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19940 and DZA65_RS19945 are separated by 71 nucleotides DZA65_RS19945 and DZA65_RS19950 are separated by 14 nucleotides DZA65_RS19950 and DZA65_RS19955 overlap by 17 nucleotides DZA65_RS19955 and DZA65_RS19960 are separated by 4 nucleotides
DZA65_RS19940: DZA65_RS19940 - IS630 family transposase, at 4,315,685 to 4,316,311
_RS19940
DZA65_RS19945: DZA65_RS19945 - nitrogen fixation protein NifM, at 4,316,383 to 4,317,168
_RS19945
DZA65_RS19950: DZA65_RS19950 - nitrogen fixation protein NifZ, at 4,317,183 to 4,317,626
_RS19950
DZA65_RS19955: DZA65_RS19955 - nitrogen fixation protein NifW, at 4,317,610 to 4,317,879
_RS19955
DZA65_RS19960: DZA65_RS19960 - homocitrate synthase, at 4,317,884 to 4,319,032
_RS19960
Position (kb) 4317
4318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4316.282 kb on + strand at 4316.312 kb on + strand at 4316.312 kb on + strand at 4316.313 kb on - strand at 4316.313 kb on - strand at 4316.313 kb on - strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.334 kb on + strand at 4316.335 kb on - strand at 4316.335 kb on - strand at 4316.343 kb on + strand at 4316.344 kb on - strand at 4316.353 kb on + strand at 4316.353 kb on + strand at 4316.354 kb on - strand at 4316.354 kb on - strand at 4316.354 kb on - strand at 4316.371 kb on - strand at 4316.371 kb on - strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.384 kb on + strand at 4316.385 kb on - strand at 4316.385 kb on - strand at 4316.385 kb on - strand at 4316.438 kb on + strand at 4316.743 kb on - strand, within DZA65_RS19945 at 4316.817 kb on - strand, within DZA65_RS19945 at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.091 kb on + strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.092 kb on - strand at 4317.254 kb on + strand, within DZA65_RS19950 at 4317.255 kb on - strand, within DZA65_RS19950 at 4317.255 kb on - strand, within DZA65_RS19950 at 4317.354 kb on - strand, within DZA65_RS19950 at 4317.354 kb on - strand, within DZA65_RS19950 at 4317.354 kb on - strand, within DZA65_RS19950 at 4317.354 kb on - strand, within DZA65_RS19950 at 4317.466 kb on + strand, within DZA65_RS19950 at 4317.466 kb on + strand, within DZA65_RS19950 at 4317.466 kb on + strand, within DZA65_RS19950 at 4317.466 kb on + strand, within DZA65_RS19950 at 4317.466 kb on + strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.467 kb on - strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.470 kb on + strand, within DZA65_RS19950 at 4317.471 kb on - strand, within DZA65_RS19950 at 4317.471 kb on - strand, within DZA65_RS19950 at 4317.471 kb on - strand, within DZA65_RS19950 at 4317.508 kb on + strand, within DZA65_RS19950 at 4317.509 kb on - strand, within DZA65_RS19950 at 4317.653 kb on + strand, within DZA65_RS19955 at 4317.653 kb on + strand, within DZA65_RS19955 at 4317.653 kb on + strand, within DZA65_RS19955 at 4317.653 kb on + strand, within DZA65_RS19955 at 4317.653 kb on + strand, within DZA65_RS19955 at 4317.654 kb on - strand, within DZA65_RS19955 at 4317.654 kb on - strand, within DZA65_RS19955 at 4317.654 kb on - strand, within DZA65_RS19955 at 4317.800 kb on + strand, within DZA65_RS19955 at 4317.800 kb on + strand, within DZA65_RS19955 at 4317.801 kb on - strand, within DZA65_RS19955 at 4317.850 kb on + strand, within DZA65_RS19955 at 4317.866 kb on + strand at 4317.866 kb on + strand at 4317.866 kb on + strand at 4317.866 kb on + strand at 4317.867 kb on - strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.933 kb on + strand at 4317.934 kb on - strand at 4317.934 kb on - strand at 4317.934 kb on - strand at 4317.934 kb on - strand at 4317.934 kb on - strand at 4317.965 kb on - strand at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.137 kb on + strand, within DZA65_RS19960 at 4318.138 kb on - strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.220 kb on + strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.221 kb on - strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960 at 4318.537 kb on + strand, within DZA65_RS19960
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 4,316,282 + -2.3 4,316,312 + +1.5 4,316,312 + -1.6 4,316,313 - -2.7 4,316,313 - -1.7 4,316,313 - -0.9 4,316,334 + +0.7 4,316,334 + +0.1 4,316,334 + -0.8 4,316,334 + -1.2 4,316,335 - -1.7 4,316,335 - -0.9 4,316,343 + -0.9 4,316,344 - +1.0 4,316,353 + -2.0 4,316,353 + -0.6 4,316,354 - +0.4 4,316,354 - -2.1 4,316,354 - -1.8 4,316,371 - +0.1 4,316,371 - +0.6 4,316,384 + -0.3 4,316,384 + -2.0 4,316,384 + -0.4 4,316,384 + +0.1 4,316,384 + +0.7 4,316,385 - +0.4 4,316,385 - +0.7 4,316,385 - -0.9 4,316,438 + +0.6 4,316,743 - DZA65_RS19945 0.46 -0.2 4,316,817 - DZA65_RS19945 0.55 -0.4 4,317,091 + -0.9 4,317,091 + +2.2 4,317,091 + +2.4 4,317,091 + -0.4 4,317,092 - +0.3 4,317,092 - +0.1 4,317,092 - +2.7 4,317,092 - +1.7 4,317,092 - -1.7 4,317,254 + DZA65_RS19950 0.16 +0.0 4,317,255 - DZA65_RS19950 0.16 -1.2 4,317,255 - DZA65_RS19950 0.16 -1.9 4,317,354 - DZA65_RS19950 0.39 -0.4 4,317,354 - DZA65_RS19950 0.39 +2.2 4,317,354 - DZA65_RS19950 0.39 +1.7 4,317,354 - DZA65_RS19950 0.39 -2.2 4,317,466 + DZA65_RS19950 0.64 -1.2 4,317,466 + DZA65_RS19950 0.64 +0.6 4,317,466 + DZA65_RS19950 0.64 -0.6 4,317,466 + DZA65_RS19950 0.64 -1.9 4,317,466 + DZA65_RS19950 0.64 -1.4 4,317,467 - DZA65_RS19950 0.64 -0.4 4,317,467 - DZA65_RS19950 0.64 +1.1 4,317,467 - DZA65_RS19950 0.64 -0.4 4,317,467 - DZA65_RS19950 0.64 +0.5 4,317,467 - DZA65_RS19950 0.64 -0.2 4,317,467 - DZA65_RS19950 0.64 +0.6 4,317,467 - DZA65_RS19950 0.64 +2.0 4,317,470 + DZA65_RS19950 0.65 +0.1 4,317,470 + DZA65_RS19950 0.65 +1.3 4,317,470 + DZA65_RS19950 0.65 +0.7 4,317,470 + DZA65_RS19950 0.65 -1.6 4,317,470 + DZA65_RS19950 0.65 +1.1 4,317,470 + DZA65_RS19950 0.65 +2.0 4,317,471 - DZA65_RS19950 0.65 +1.2 4,317,471 - DZA65_RS19950 0.65 -1.9 4,317,471 - DZA65_RS19950 0.65 -0.9 4,317,508 + DZA65_RS19950 0.73 +2.9 4,317,509 - DZA65_RS19950 0.73 +2.1 4,317,653 + DZA65_RS19955 0.16 -0.9 4,317,653 + DZA65_RS19955 0.16 +2.5 4,317,653 + DZA65_RS19955 0.16 -0.6 4,317,653 + DZA65_RS19955 0.16 -0.9 4,317,653 + DZA65_RS19955 0.16 -1.9 4,317,654 - DZA65_RS19955 0.16 +2.4 4,317,654 - DZA65_RS19955 0.16 -0.9 4,317,654 - DZA65_RS19955 0.16 +1.1 4,317,800 + DZA65_RS19955 0.70 +1.1 4,317,800 + DZA65_RS19955 0.70 +2.1 4,317,801 - DZA65_RS19955 0.71 -0.9 4,317,850 + DZA65_RS19955 0.89 +1.6 4,317,866 + -1.4 4,317,866 + -0.2 4,317,866 + -0.3 4,317,866 + -2.9 4,317,867 - +1.7 4,317,933 + -0.4 4,317,933 + +0.7 4,317,933 + -1.2 4,317,933 + -0.9 4,317,933 + +1.8 4,317,933 + +0.3 4,317,933 + -1.2 4,317,933 + -2.6 4,317,934 - +2.2 4,317,934 - +1.0 4,317,934 - +2.9 4,317,934 - +0.4 4,317,934 - -1.9 4,317,965 - -0.4 4,318,137 + DZA65_RS19960 0.22 +0.6 4,318,137 + DZA65_RS19960 0.22 -1.7 4,318,137 + DZA65_RS19960 0.22 +0.8 4,318,137 + DZA65_RS19960 0.22 -0.4 4,318,138 - DZA65_RS19960 0.22 -0.4 4,318,220 + DZA65_RS19960 0.29 -1.2 4,318,220 + DZA65_RS19960 0.29 +0.1 4,318,220 + DZA65_RS19960 0.29 -1.2 4,318,220 + DZA65_RS19960 0.29 -1.6 4,318,220 + DZA65_RS19960 0.29 +0.7 4,318,220 + DZA65_RS19960 0.29 -1.4 4,318,220 + DZA65_RS19960 0.29 -0.9 4,318,221 - DZA65_RS19960 0.29 -1.0 4,318,221 - DZA65_RS19960 0.29 -0.9 4,318,221 - DZA65_RS19960 0.29 +0.1 4,318,221 - DZA65_RS19960 0.29 -1.3 4,318,221 - DZA65_RS19960 0.29 +0.3 4,318,221 - DZA65_RS19960 0.29 -1.7 4,318,221 - DZA65_RS19960 0.29 -0.0 4,318,221 - DZA65_RS19960 0.29 -2.0 4,318,221 - DZA65_RS19960 0.29 -1.2 4,318,221 - DZA65_RS19960 0.29 +2.5 4,318,221 - DZA65_RS19960 0.29 -0.4 4,318,537 + DZA65_RS19960 0.57 -0.4 4,318,537 + DZA65_RS19960 0.57 -0.2
Or see this region's nucleotide sequence