Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19040

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,115,842	-		DZA65_RS19035	0.32	+1.8
4,115,842	-		DZA65_RS19035	0.32	+0.8
4,115,891	+		DZA65_RS19035	0.37	+0.3
4,115,891	+		DZA65_RS19035	0.37	+2.1
4,115,910	+		DZA65_RS19035	0.40	-0.3
4,115,910	+		DZA65_RS19035	0.40	+0.3
4,115,910	+		DZA65_RS19035	0.40	-2.1
4,115,911	-		DZA65_RS19035	0.40	-0.8
4,115,911	-		DZA65_RS19035	0.40	-0.7
4,115,965	+		DZA65_RS19035	0.46	+0.1
4,115,965	+		DZA65_RS19035	0.46	-1.6
4,115,965	+		DZA65_RS19035	0.46	+1.9
4,115,965	+		DZA65_RS19035	0.46	-2.6
4,115,966	-		DZA65_RS19035	0.46	-0.5
4,115,966	-		DZA65_RS19035	0.46	-1.0
4,116,012	+		DZA65_RS19035	0.51	-0.7
4,116,046	+		DZA65_RS19035	0.55	-1.9
4,116,046	+		DZA65_RS19035	0.55	-0.4
4,116,046	+		DZA65_RS19035	0.55	+2.3
4,116,046	+		DZA65_RS19035	0.55	-1.7
4,116,124	-		DZA65_RS19035	0.64	-0.1
4,116,138	+		DZA65_RS19035	0.65	-2.6
4,116,138	+		DZA65_RS19035	0.65	+0.5
4,116,382	+				-3.4
4,116,382	+				-0.5
4,116,382	+				+2.8
4,116,382	+				-1.2
4,116,382	+				+2.1
4,116,382	+				+0.1
4,116,382	+				-0.7
4,116,382	+				-0.7
4,116,382	+				+1.9
4,116,382	+				+1.2
4,116,382	+				+2.2
4,116,382	+				+3.3
4,116,382	+				+0.8
4,116,382	+				+4.3
4,116,382	+				-0.8
4,116,383	-				+0.7
4,116,383	-				+3.0
4,116,383	-				-0.9
4,116,383	-				-1.2
4,116,383	-				+2.1
4,116,383	-				-0.2
4,116,383	-				+0.9
4,116,383	-				+1.1
4,116,383	-				-1.2
4,116,383	-				+3.0
4,116,383	-				-0.2
4,116,383	-				-1.9
4,116,383	-				-3.7
4,116,383	-				-0.3
4,116,383	-				-1.2
4,116,383	-				-1.7
4,116,384	+				-1.2
4,116,384	+				+0.1
4,116,384	+				+0.1
4,116,384	+				-0.9
4,116,384	+				+1.1
4,116,384	+				+2.1
4,116,385	-				-2.7
4,116,385	-				-0.9
4,116,385	-				-0.5
4,116,393	-				-1.9
4,116,445	+				-0.5
4,116,445	+				-0.9
4,116,446	-				-2.6
4,116,446	-				-1.9
4,116,471	+				+1.1
4,116,472	-				-1.7
4,116,472	-				+1.4
4,116,472	-				+1.5
4,116,550	+				-1.2
4,116,551	-				-3.7
4,116,551	-				-1.2
4,116,551	-				+3.0
4,116,551	-				+0.1
4,116,705	+				+0.7
4,116,705	+				+3.5
4,116,705	+				-0.2
4,116,706	-				-0.5
4,116,706	-				-0.5
4,116,706	-				-0.2
4,116,706	-				+1.5
4,116,706	-				+0.2
4,116,706	-				-0.9
4,116,732	+				-2.6
4,116,733	-				+4.3
4,116,733	-				-1.5
4,116,733	-				+1.4
4,116,733	-				-0.0
4,116,794	-		DZA65_RS19040	0.19	+0.8
4,116,802	+		DZA65_RS19040	0.21	-1.0
4,116,802	+		DZA65_RS19040	0.21	-2.1
4,116,802	+		DZA65_RS19040	0.21	+0.0
4,116,803	-		DZA65_RS19040	0.21	-0.1
4,116,851	-		DZA65_RS19040	0.32	+0.8
4,116,852	+		DZA65_RS19040	0.32	+2.1
4,116,852	+		DZA65_RS19040	0.32	+0.6
4,116,853	-		DZA65_RS19040	0.32	-3.6
4,116,936	+		DZA65_RS19040	0.51	+1.1
4,116,936	+		DZA65_RS19040	0.51	-1.8
4,116,936	+		DZA65_RS19040	0.51	+0.1
4,116,936	+		DZA65_RS19040	0.51	-1.1
4,116,936	+		DZA65_RS19040	0.51	-2.1
4,116,936	+		DZA65_RS19040	0.51	-1.7
4,116,937	-		DZA65_RS19040	0.51	-1.5
4,116,937	-		DZA65_RS19040	0.51	-0.9
4,116,937	-		DZA65_RS19040	0.51	+1.1
4,116,937	-		DZA65_RS19040	0.51	+1.2
4,116,937	-		DZA65_RS19040	0.51	-3.5
4,116,937	-		DZA65_RS19040	0.51	+1.2
4,116,937	-		DZA65_RS19040	0.51	+0.5
4,116,946	+		DZA65_RS19040	0.53	-0.9
4,116,946	+		DZA65_RS19040	0.53	-0.9
4,116,947	-		DZA65_RS19040	0.54	+2.7
4,116,981	+		DZA65_RS19040	0.61	+2.4
4,116,982	-		DZA65_RS19040	0.61	+0.9
4,117,024	-		DZA65_RS19040	0.71	-2.4
4,117,024	-		DZA65_RS19040	0.71	-3.2
4,117,099	-		DZA65_RS19040	0.88	-1.1
4,117,141	-				-1.5
4,117,192	+				+3.7
4,117,192	+				-1.9
4,117,192	+				+0.4
4,117,192	+				+1.6
4,117,192	+				+1.4
4,117,392	+		DZA65_RS19045	0.16	+1.7
4,117,534	+		DZA65_RS19045	0.26	-2.4
4,117,534	+		DZA65_RS19045	0.26	+3.1
4,117,534	+		DZA65_RS19045	0.26	-1.2
4,117,535	-				-0.9
4,117,535	-		DZA65_RS19045	0.27	+0.8
4,117,535	-		DZA65_RS19045	0.27	-0.5
4,117,535	-		DZA65_RS19045	0.27	-1.5
4,117,538	+		DZA65_RS19045	0.27	-0.9
4,117,538	+		DZA65_RS19045	0.27	-2.4
4,117,538	+		DZA65_RS19045	0.27	+0.1
4,117,606	+		DZA65_RS19045	0.32	-3.2
4,117,893	+		DZA65_RS19045	0.52	+1.8
4,117,893	+		DZA65_RS19045	0.52	+1.8
4,117,893	+		DZA65_RS19045	0.52	+1.5
4,117,893	+		DZA65_RS19045	0.52	+0.7
4,117,894	-		DZA65_RS19045	0.52	+0.3
4,117,894	-		DZA65_RS19045	0.52	-0.5
4,117,894	-		DZA65_RS19045	0.52	-1.8
4,117,894	-		DZA65_RS19045	0.52	-0.5
4,117,894	-		DZA65_RS19045	0.52	+1.9
4,117,894	-		DZA65_RS19045	0.52	+0.5
4,117,894	-		DZA65_RS19045	0.52	-0.9
4,117,923	-		DZA65_RS19045	0.54	+0.8
4,117,931	+		DZA65_RS19045	0.54	+1.9
4,117,932	-		DZA65_RS19045	0.54	-2.5
4,117,932	-		DZA65_RS19045	0.54	-0.9
4,117,952	+		DZA65_RS19045	0.56	-1.7
4,117,952	+		DZA65_RS19045	0.56	-0.2
4,118,131	+		DZA65_RS19045	0.68	+2.5
4,118,132	-		DZA65_RS19045	0.68	+2.3
4,118,132	-		DZA65_RS19045	0.68	-1.7
4,118,132	-		DZA65_RS19045	0.68	+0.6
4,118,138	+		DZA65_RS19045	0.69	-1.2
4,118,148	-		DZA65_RS19045	0.70	-0.5
4,118,148	-		DZA65_RS19045	0.70	-1.6
4,118,148	-		DZA65_RS19045	0.70	+3.6
4,118,148	-		DZA65_RS19045	0.70	-1.3