Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18905

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,082,753	-		DZA65_RS18900	0.22	+1.0
4,082,753	-		DZA65_RS18900	0.22	-0.1
4,082,884	+		DZA65_RS18900	0.37	+2.8
4,082,884	+		DZA65_RS18900	0.37	-2.8
4,082,884	+		DZA65_RS18900	0.37	-0.9
4,082,884	+		DZA65_RS18900	0.37	+1.4
4,082,885	-		DZA65_RS18900	0.37	-2.2
4,082,885	-		DZA65_RS18900	0.37	-0.2
4,082,885	-		DZA65_RS18900	0.37	+1.9
4,083,047	-		DZA65_RS18900	0.56	-0.9
4,083,313	+		DZA65_RS18900	0.87	-1.7
4,083,314	-		DZA65_RS18900	0.87	+1.7
4,083,314	-		DZA65_RS18900	0.87	+2.1
4,083,314	-		DZA65_RS18900	0.87	+1.2
4,083,314	-		DZA65_RS18900	0.87	-0.9
4,083,314	-		DZA65_RS18900	0.87	-0.8
4,083,316	+		DZA65_RS18900	0.87	+3.2
4,083,316	+		DZA65_RS18900	0.87	-1.1
4,083,317	-		DZA65_RS18900	0.87	+0.1
4,083,357	+				+0.4
4,083,357	+				+1.6
4,083,358	-				+0.4
4,083,358	-				-2.2
4,083,358	-				+0.1
4,083,411	+				+1.1
4,083,411	+				+1.9
4,083,412	-				-0.8
4,083,752	-		DZA65_RS18905	0.33	-0.9
4,083,813	+		DZA65_RS18905	0.39	+0.8
4,083,813	+		DZA65_RS18905	0.39	+1.4
4,083,866	-		DZA65_RS18905	0.46	+0.8
4,083,866	-		DZA65_RS18905	0.46	+1.1
4,083,866	-		DZA65_RS18905	0.46	-1.9
4,083,943	+				+0.8
4,083,943	+		DZA65_RS18905	0.54	-1.2
4,083,943	+		DZA65_RS18905	0.54	-3.2
4,083,943	+		DZA65_RS18905	0.54	+0.6
4,083,943	+		DZA65_RS18905	0.54	-1.0
4,083,943	+		DZA65_RS18905	0.54	+1.6
4,083,943	+		DZA65_RS18905	0.54	+1.4
4,083,943	+		DZA65_RS18905	0.54	+2.8
4,083,943	+		DZA65_RS18905	0.54	+1.4
4,083,943	+		DZA65_RS18905	0.54	-2.4
4,083,943	+		DZA65_RS18905	0.54	+1.0
4,083,943	+		DZA65_RS18905	0.54	+0.8
4,083,944	-		DZA65_RS18905	0.54	+2.3
4,083,944	-		DZA65_RS18905	0.54	+1.1
4,083,944	-		DZA65_RS18905	0.54	-0.9
4,083,944	-		DZA65_RS18905	0.54	-0.4
4,083,944	-		DZA65_RS18905	0.54	+2.2
4,083,944	-		DZA65_RS18905	0.54	+0.4
4,083,956	+		DZA65_RS18905	0.56	-3.2
4,083,956	+		DZA65_RS18905	0.56	-0.0
4,083,956	+		DZA65_RS18905	0.56	+1.4
4,083,956	+		DZA65_RS18905	0.56	-1.6
4,083,957	-		DZA65_RS18905	0.56	-0.3
4,083,957	-		DZA65_RS18905	0.56	-2.2
4,083,957	-		DZA65_RS18905	0.56	+0.8
4,083,957	-		DZA65_RS18905	0.56	-0.9
4,083,957	-		DZA65_RS18905	0.56	+3.5
4,083,973	+		DZA65_RS18905	0.58	+0.1
4,083,973	+		DZA65_RS18905	0.58	-0.2
4,083,973	+		DZA65_RS18905	0.58	-0.3
4,083,973	+		DZA65_RS18905	0.58	+0.7
4,083,974	-		DZA65_RS18905	0.58	-0.1
4,084,045	+		DZA65_RS18905	0.66	+0.8
4,084,168	+		DZA65_RS18905	0.80	-2.7
4,084,168	+		DZA65_RS18905	0.80	-1.2
4,084,169	-		DZA65_RS18905	0.80	-1.7
4,084,169	-		DZA65_RS18905	0.80	-0.8
4,084,169	-				-1.5
4,084,211	+		DZA65_RS18905	0.85	+1.6
4,084,212	-		DZA65_RS18905	0.85	-0.7
4,084,291	+				-0.7
4,084,291	+				+1.1
4,084,291	+				+2.2
4,084,292	-				-1.9
4,084,292	-				-0.5
4,084,292	-				+1.1
4,084,292	-				-0.3
4,084,292	-				+0.5
4,084,292	-				-3.2
4,084,306	-				-1.5
4,084,342	+				+0.1
4,084,342	+				+0.4
4,084,342	+				+0.1
4,084,342	+				+1.7
4,084,342	+				+1.2
4,084,342	+				-0.5
4,084,342	+				-0.6
4,084,342	+				-0.9
4,084,342	+				+1.5
4,084,342	+				-0.8
4,084,343	-				-2.1
4,084,343	-				+2.2
4,084,343	-				-2.7
4,084,343	-				-2.5
4,084,343	-				+0.1
4,084,445	-				-1.2
4,084,463	-				+1.0
4,084,530	-				+0.0
4,084,530	-				+2.1
4,084,544	+				-1.2
4,084,544	+				-1.5
4,084,545	-				+0.7
4,084,545	-				-1.7
4,084,545	-				-3.2
4,084,545	-				-0.9
4,084,551	+				-0.9
4,084,551	+				+1.1
4,084,551	+				-2.9
4,084,551	+				+1.1
4,084,551	+				+0.8
4,084,551	+				+1.4
4,084,551	+				-0.5
4,084,551	+				-1.4
4,084,551	+				-1.2
4,084,551	+				-1.5
4,084,551	+				-2.5
4,084,551	+				+2.7
4,084,551	+				-0.2
4,084,551	+				+3.0
4,084,551	+				+1.1
4,084,551	+				+1.1
4,084,551	+				-2.2
4,084,551	+				-0.7
4,084,552	-				-0.1
4,084,552	-				-0.5
4,084,552	-				-0.5
4,084,552	-				+0.3
4,084,552	-				-0.5
4,084,552	-				+1.1
4,084,552	-				-1.5
4,084,552	-				+0.1
4,084,552	-				+2.7
4,084,554	+				+1.9
4,084,554	+				-1.5
4,084,554	+				+1.6
4,084,554	+				-0.9
4,084,554	+				-0.5
4,084,554	+				-2.1
4,084,554	+				-2.2
4,084,554	+				+2.6
4,084,554	+				-1.7
4,084,555	-				-0.8
4,084,555	-				+0.2
4,084,555	-				+1.6
4,084,555	-				+0.8
4,084,555	-				-2.7
4,084,555	-				-0.9
4,084,571	+				+1.5
4,084,606	+				-1.2
4,084,606	+				+0.2
4,084,606	+				+0.1
4,084,607	-				+3.4
4,084,944	+		DZA65_RS18910	0.69	+1.8
4,084,945	-		DZA65_RS18910	0.69	-2.4
4,084,945	-		DZA65_RS18910	0.69	+2.8
4,084,966	+		DZA65_RS18910	0.72	+0.3
4,084,966	+		DZA65_RS18910	0.72	-2.9
4,084,966	+		DZA65_RS18910	0.72	+0.8
4,084,969	+		DZA65_RS18910	0.73	-1.9
4,084,969	+		DZA65_RS18910	0.73	-1.2
4,084,969	+		DZA65_RS18910	0.73	-1.1
4,084,969	+		DZA65_RS18910	0.73	+1.3
4,084,969	+		DZA65_RS18910	0.73	-0.5
4,084,969	+		DZA65_RS18910	0.73	-1.7
4,084,970	-		DZA65_RS18910	0.73	+1.2
4,084,970	-		DZA65_RS18910	0.73	-2.6
4,084,970	-		DZA65_RS18910	0.73	+1.5
4,084,970	-		DZA65_RS18910	0.73	+1.1
4,084,970	-		DZA65_RS18910	0.73	+0.3
4,084,970	-		DZA65_RS18910	0.73	+0.6
4,084,970	-		DZA65_RS18910	0.73	+2.8
4,084,970	-		DZA65_RS18910	0.73	+0.4
4,084,980	+		DZA65_RS18910	0.75	+1.8
4,084,980	+		DZA65_RS18910	0.75	-1.2
4,085,017	-		DZA65_RS18910	0.81	-0.9
4,085,017	-		DZA65_RS18910	0.81	+2.1
4,085,029	+		DZA65_RS18910	0.84	-1.1
4,085,029	+		DZA65_RS18910	0.84	+2.0
4,085,029	+		DZA65_RS18910	0.84	-1.2
4,085,030	-		DZA65_RS18910	0.84	-1.9
4,085,089	+				-1.5
4,085,119	+				+0.3
4,085,119	+				+0.1
4,085,119	+				-0.2
4,085,120	-				+1.0
4,085,120	-				+2.4
4,085,120	-				-1.5
4,085,120	-				+1.7
4,085,136	-				+0.4
4,085,236	+				+0.7
4,085,236	+				+1.5
4,085,236	+				-2.5
4,085,236	+				+2.3
4,085,236	+				-1.2
4,085,237	-				-0.5
4,085,237	-				-1.7