Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17710

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,812,109	+		DZA65_RS17705	0.30	-2.0
3,812,109	+		DZA65_RS17705	0.30	+0.6
3,812,109	+		DZA65_RS17705	0.30	-0.2
3,812,109	+		DZA65_RS17705	0.30	+0.6
3,812,109	+		DZA65_RS17705	0.30	+0.9
3,812,109	+		DZA65_RS17705	0.30	-0.6
3,812,109	+		DZA65_RS17705	0.30	+0.9
3,812,109	+		DZA65_RS17705	0.30	+1.9
3,812,109	+		DZA65_RS17705	0.30	-0.8
3,812,109	+		DZA65_RS17705	0.30	-0.9
3,812,109	+		DZA65_RS17705	0.30	+1.1
3,812,110	-		DZA65_RS17705	0.30	-1.9
3,812,110	-		DZA65_RS17705	0.30	+1.8
3,812,110	-		DZA65_RS17705	0.30	+2.9
3,812,110	-		DZA65_RS17705	0.30	+0.9
3,812,110	-		DZA65_RS17705	0.30	-1.4
3,812,110	-		DZA65_RS17705	0.30	-1.1
3,812,110	-		DZA65_RS17705	0.30	+2.0
3,812,110	-		DZA65_RS17705	0.30	-0.6
3,812,110	-		DZA65_RS17705	0.30	+2.0
3,812,110	-		DZA65_RS17705	0.30	+0.5
3,812,110	-		DZA65_RS17705	0.30	+0.3
3,812,119	+		DZA65_RS17705	0.31	-2.5
3,812,146	+		DZA65_RS17705	0.33	+0.1
3,812,147	-		DZA65_RS17705	0.33	-1.5
3,812,147	-		DZA65_RS17705	0.33	-1.0
3,812,172	+		DZA65_RS17705	0.35	+3.3
3,812,172	+		DZA65_RS17705	0.35	-1.1
3,812,173	-		DZA65_RS17705	0.35	-1.1
3,812,173	-				-3.1
3,812,237	+		DZA65_RS17705	0.40	+1.9
3,812,237	+		DZA65_RS17705	0.40	+0.8
3,812,326	+		DZA65_RS17705	0.47	-1.6
3,812,326	+		DZA65_RS17705	0.47	-3.8
3,812,326	+		DZA65_RS17705	0.47	-1.9
3,812,327	-		DZA65_RS17705	0.47	-1.1
3,812,327	-		DZA65_RS17705	0.47	+1.9
3,812,327	-		DZA65_RS17705	0.47	+0.2
3,812,327	-		DZA65_RS17705	0.47	+0.9
3,812,404	+		DZA65_RS17705	0.53	+0.7
3,812,425	+		DZA65_RS17705	0.55	-2.4
3,812,425	+		DZA65_RS17705	0.55	+2.2
3,812,425	+		DZA65_RS17705	0.55	-2.9
3,812,425	+		DZA65_RS17705	0.55	+0.9
3,812,425	+		DZA65_RS17705	0.55	-1.9
3,812,425	+		DZA65_RS17705	0.55	-2.5
3,812,426	-		DZA65_RS17705	0.55	-0.3
3,812,426	-		DZA65_RS17705	0.55	-0.1
3,812,426	-		DZA65_RS17705	0.55	+0.1
3,812,426	-		DZA65_RS17705	0.55	-2.4
3,812,426	-		DZA65_RS17705	0.55	+1.5
3,812,426	-		DZA65_RS17705	0.55	-0.3
3,812,426	-		DZA65_RS17705	0.55	-0.9
3,812,504	+		DZA65_RS17705	0.61	-0.6
3,812,504	+		DZA65_RS17705	0.61	-2.1
3,812,504	+		DZA65_RS17705	0.61	+0.6
3,812,504	+		DZA65_RS17705	0.61	+0.2
3,812,504	+		DZA65_RS17705	0.61	-1.9
3,812,505	-		DZA65_RS17705	0.61	-2.2
3,812,505	-		DZA65_RS17705	0.61	-1.4
3,812,505	-		DZA65_RS17705	0.61	-1.1
3,812,505	-		DZA65_RS17705	0.61	+4.9
3,812,505	-		DZA65_RS17705	0.61	-1.6
3,812,609	+		DZA65_RS17705	0.69	-1.4
3,812,609	+		DZA65_RS17705	0.69	+0.6
3,812,696	+		DZA65_RS17705	0.76	-2.9
3,812,824	+		DZA65_RS17705	0.86	+2.2
3,812,824	+		DZA65_RS17705	0.86	-3.0
3,812,825	-		DZA65_RS17705	0.86	+0.9
3,812,825	-		DZA65_RS17705	0.86	+2.4
3,812,825	-		DZA65_RS17705	0.86	+0.2
3,812,825	-		DZA65_RS17705	0.86	-2.1
3,812,825	-		DZA65_RS17705	0.86	+0.1
3,812,825	-		DZA65_RS17705	0.86	-3.3
3,812,856	+		DZA65_RS17705	0.89	+1.9
3,812,856	+		DZA65_RS17705	0.89	+1.5
3,812,856	+		DZA65_RS17705	0.89	-1.9
3,812,856	+		DZA65_RS17705	0.89	+1.5
3,812,857	-		DZA65_RS17705	0.89	+1.9
3,812,875	+				-0.1
3,812,875	+				-3.6
3,812,875	+				+0.5
3,812,876	-				-1.6
3,812,876	-				-0.1
3,812,876	-				+2.5
3,812,876	-				+0.3
3,812,932	+				-1.6
3,812,932	+				+0.9
3,812,932	+				-1.1
3,813,042	-				+0.4
3,813,184	+		DZA65_RS17710	0.34	-1.1
3,813,184	+		DZA65_RS17710	0.34	-1.9
3,813,184	+		DZA65_RS17710	0.34	-1.9
3,813,184	+		DZA65_RS17710	0.34	+0.2
3,813,185	-		DZA65_RS17710	0.34	-2.1
3,813,185	-		DZA65_RS17710	0.34	+2.4
3,813,185	-		DZA65_RS17710	0.34	-2.1
3,813,185	-		DZA65_RS17710	0.34	-1.1
3,813,229	+		DZA65_RS17710	0.42	-1.4
3,813,230	-		DZA65_RS17710	0.42	-1.1
3,813,230	-		DZA65_RS17710	0.42	-2.5
3,813,288	-		DZA65_RS17710	0.53	-1.1
3,813,397	+		DZA65_RS17710	0.73	-0.1
3,813,397	+		DZA65_RS17710	0.73	-0.6
3,813,398	-		DZA65_RS17710	0.74	-0.1
3,813,398	-		DZA65_RS17710	0.74	-1.6
3,813,478	-		DZA65_RS17710	0.88	-2.5
3,813,519	+				+2.2
3,813,519	+				+0.9
3,813,519	+				+2.3
3,813,520	-				-0.1
3,813,520	-				-0.1
3,813,534	+				-0.6
3,813,534	+				+0.9
3,813,575	+				+1.2
3,813,575	+				+1.8
3,813,575	+				+0.6
3,813,575	+				+2.6
3,813,576	-				-1.4
3,813,576	-				-0.3
3,813,580	+				-0.6
3,813,580	+				+1.5
3,813,580	+				-0.2
3,813,580	+				-0.6
3,813,580	+				-1.6
3,813,581	-				+0.7
3,813,581	-				-3.5
3,813,618	-				-0.1
3,813,701	+				+1.5
3,813,701	+				+1.1
3,813,732	+				+1.1
3,813,732	+				+0.8
3,813,732	+				+1.3
3,813,733	-				+1.7
3,813,754	+				-1.4
3,813,835	+		DZA65_RS17715	0.16	-1.9
3,813,899	+		DZA65_RS17715	0.21	-1.4
3,813,899	+		DZA65_RS17715	0.21	-1.6
3,813,899	+		DZA65_RS17715	0.21	+0.9
3,813,900	-		DZA65_RS17715	0.21	+0.5
3,813,925	+		DZA65_RS17715	0.23	+0.4
3,813,925	+		DZA65_RS17715	0.23	+0.1
3,813,925	+		DZA65_RS17715	0.23	+0.5
3,813,925	+		DZA65_RS17715	0.23	-0.8
3,813,925	+		DZA65_RS17715	0.23	+1.5
3,813,926	-		DZA65_RS17715	0.23	+0.4
3,813,926	-		DZA65_RS17715	0.23	-1.4
3,813,926	-		DZA65_RS17715	0.23	+2.8
3,813,926	-		DZA65_RS17715	0.23	+2.9
3,813,926	-		DZA65_RS17715	0.23	-2.1
3,814,034	+				-1.1
3,814,034	+		DZA65_RS17715	0.31	+0.2
3,814,035	-		DZA65_RS17715	0.32	-1.8
3,814,035	-		DZA65_RS17715	0.32	+1.4
3,814,108	+		DZA65_RS17715	0.37	-1.1
3,814,108	+		DZA65_RS17715	0.37	-0.6
3,814,108	+		DZA65_RS17715	0.37	-2.5
3,814,108	+		DZA65_RS17715	0.37	+0.4
3,814,108	+		DZA65_RS17715	0.37	+0.9
3,814,109	-		DZA65_RS17715	0.37	-0.1
3,814,109	-		DZA65_RS17715	0.37	+0.0
3,814,109	-		DZA65_RS17715	0.37	-2.9
3,814,235	+		DZA65_RS17715	0.48	-0.4
3,814,235	+		DZA65_RS17715	0.48	-2.9
3,814,235	+		DZA65_RS17715	0.48	-3.2
3,814,236	-		DZA65_RS17715	0.48	-1.4
3,814,236	-		DZA65_RS17715	0.48	-0.9
3,814,236	-		DZA65_RS17715	0.48	+1.5
3,814,256	+		DZA65_RS17715	0.49	-0.4
3,814,256	+		DZA65_RS17715	0.49	-1.2
3,814,257	-		DZA65_RS17715	0.49	-0.7
3,814,294	+		DZA65_RS17715	0.52	+1.3
3,814,391	+		DZA65_RS17715	0.60	-1.9
3,814,493	+		DZA65_RS17715	0.68	-0.6
3,814,517	+		DZA65_RS17715	0.70	+0.4