Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16875

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,646,965	+		DZA65_RS16870	0.18	-0.8
3,646,965	+		DZA65_RS16870	0.18	-1.1
3,646,965	+		DZA65_RS16870	0.18	+0.9
3,646,965	+		DZA65_RS16870	0.18	-1.4
3,646,965	+		DZA65_RS16870	0.18	-0.5
3,646,965	+		DZA65_RS16870	0.18	-0.1
3,646,965	+		DZA65_RS16870	0.18	-2.6
3,646,965	+		DZA65_RS16870	0.18	-0.7
3,646,965	+		DZA65_RS16870	0.18	-1.9
3,646,965	+		DZA65_RS16870	0.18	-0.7
3,646,965	+		DZA65_RS16870	0.18	-2.8
3,646,965	+		DZA65_RS16870	0.18	-2.1
3,646,966	-				-1.7
3,646,966	-		DZA65_RS16870	0.18	-1.9
3,646,966	-		DZA65_RS16870	0.18	-1.4
3,646,966	-		DZA65_RS16870	0.18	-2.4
3,646,966	-		DZA65_RS16870	0.18	-0.1
3,646,966	-		DZA65_RS16870	0.18	-0.1
3,646,970	+		DZA65_RS16870	0.18	-2.3
3,646,970	+		DZA65_RS16870	0.18	+0.9
3,646,970	+		DZA65_RS16870	0.18	+2.2
3,646,971	-		DZA65_RS16870	0.18	-1.1
3,646,971	-		DZA65_RS16870	0.18	+0.9
3,646,971	-		DZA65_RS16870	0.18	-3.3
3,646,971	-		DZA65_RS16870	0.18	-2.4
3,646,971	-		DZA65_RS16870	0.18	+2.7
3,646,971	-		DZA65_RS16870	0.18	-1.7
3,646,971	-		DZA65_RS16870	0.18	-2.1
3,646,971	-		DZA65_RS16870	0.18	-0.8
3,646,971	-		DZA65_RS16870	0.18	-0.7
3,646,971	-		DZA65_RS16870	0.18	-2.8
3,646,981	+		DZA65_RS16870	0.20	+3.2
3,646,981	+		DZA65_RS16870	0.20	+0.9
3,646,981	+		DZA65_RS16870	0.20	-3.2
3,646,981	+		DZA65_RS16870	0.20	-1.1
3,646,986	+		DZA65_RS16870	0.20	-1.1
3,647,034	+		DZA65_RS16870	0.26	-0.7
3,647,034	+		DZA65_RS16870	0.26	+0.9
3,647,034	+		DZA65_RS16870	0.26	-0.7
3,647,034	+		DZA65_RS16870	0.26	-3.4
3,647,034	+		DZA65_RS16870	0.26	-1.4
3,647,035	-		DZA65_RS16870	0.27	-1.9
3,647,069	+		DZA65_RS16870	0.31	+0.3
3,647,070	-		DZA65_RS16870	0.31	-0.1
3,647,160	+		DZA65_RS16870	0.42	-1.7
3,647,160	+		DZA65_RS16870	0.42	-1.7
3,647,278	-		DZA65_RS16870	0.57	-2.6
3,647,278	-		DZA65_RS16870	0.57	-1.6
3,647,278	-		DZA65_RS16870	0.57	-1.2
3,647,355	+		DZA65_RS16870	0.67	-1.7
3,647,355	+		DZA65_RS16870	0.67	-2.1
3,647,355	+		DZA65_RS16870	0.67	-0.1
3,647,359	+		DZA65_RS16870	0.67	+1.4
3,647,359	+		DZA65_RS16870	0.67	-1.3
3,647,360	-		DZA65_RS16870	0.68	-2.1
3,647,360	-		DZA65_RS16870	0.68	-0.7
3,647,360	-		DZA65_RS16870	0.68	-1.8
3,647,360	-		DZA65_RS16870	0.68	+1.0
3,647,390	+		DZA65_RS16870	0.71	-1.1
3,647,390	+		DZA65_RS16870	0.71	-1.9
3,647,390	+		DZA65_RS16870	0.71	-4.2
3,647,390	+		DZA65_RS16870	0.71	-0.4
3,647,390	+		DZA65_RS16870	0.71	+1.4
3,647,391	-		DZA65_RS16870	0.71	-3.0
3,647,391	-		DZA65_RS16870	0.71	-2.0
3,647,391	-		DZA65_RS16870	0.71	-3.1
3,647,391	-		DZA65_RS16870	0.71	-1.9
3,647,391	-		DZA65_RS16870	0.71	-1.7
3,647,391	-		DZA65_RS16870	0.71	-0.1
3,647,404	+		DZA65_RS16870	0.73	-1.6
3,647,461	+		DZA65_RS16870	0.80	+1.5
3,647,481	-		DZA65_RS16870	0.83	-1.1
3,647,481	-		DZA65_RS16870	0.83	-3.3
3,647,498	+		DZA65_RS16870	0.85	+1.6
3,647,589	+				-0.7
3,647,589	+				+0.9
3,647,589	+				-0.1
3,647,590	-				-1.5
3,647,602	+				-2.4
3,647,602	+				-3.4
3,647,602	+				-3.2
3,647,602	+				-1.9
3,647,602	+				-1.4
3,647,602	+				-2.1
3,647,602	+				-2.3
3,647,602	+				-1.4
3,647,603	-				-0.7
3,647,603	-				-1.1
3,647,603	-				-1.9
3,647,603	-				-0.3
3,647,603	-				-1.7
3,647,603	-				-0.1
3,647,603	-				-1.7
3,647,604	+				-1.9
3,647,604	+				-1.9
3,647,604	+				-2.1
3,647,604	+				-2.4
3,647,604	+				-1.1
3,647,604	+				-0.2
3,647,604	+				-3.0
3,647,604	+				-1.4
3,647,604	+				-1.0
3,647,604	+				-4.2
3,647,605	-				-2.7
3,647,605	-				-3.1
3,647,605	-				-0.1
3,647,605	-				-1.0
3,647,605	-				-0.7
3,647,605	-				-2.4
3,647,605	-				-1.3
3,647,637	-				-1.4
3,647,642	+				+0.9
3,647,642	+				-2.4
3,647,642	+				+1.9
3,647,642	+				-1.4
3,647,642	+				-1.9
3,647,642	+				-0.4
3,647,642	+				-2.1
3,647,643	-				-0.5
3,647,644	+				-2.2
3,647,645	-				-1.1
3,647,704	+				-4.0
3,647,704	+				-1.4
3,647,704	+				-1.7
3,647,705	-				+1.6
3,647,714	+				-0.9
3,647,715	-				+1.0
3,647,715	-				-2.3
3,647,720	-				-0.2
3,647,789	+				-2.1
3,647,807	-				-0.7
3,647,809	+				-2.7
3,647,810	-				+1.5
3,647,816	+				-1.9
3,647,830	+				-0.3
3,647,830	+				+0.3
3,647,830	+				-1.4
3,647,830	+				-1.9
3,647,830	+				-0.5
3,647,830	+				-1.4
3,647,831	-				+1.3
3,647,831	-				-1.2
3,647,833	-				+2.5
3,647,833	-				+1.9
3,647,853	-				-0.7
3,647,891	-				-2.9
3,647,891	-				-0.0
3,647,891	-				-1.9
3,647,929	+				-1.4
3,647,929	+				-1.7
3,647,929	+				-2.8
3,647,930	-				+0.9
3,647,930	-				+2.2
3,647,931	+				+0.7
3,647,931	+				-0.7
3,647,932	-				+1.9
3,647,932	-				-0.1
3,647,932	-				-1.7
3,647,994	+		DZA65_RS16875	0.11	-0.3
3,647,995	-		DZA65_RS16875	0.11	-1.3
3,647,995	-		DZA65_RS16875	0.11	+2.3
3,648,003	+		DZA65_RS16875	0.15	+1.7
3,648,004	-		DZA65_RS16875	0.15	-0.7
3,648,004	-		DZA65_RS16875	0.15	+0.5
3,648,004	-		DZA65_RS16875	0.15	+0.0
3,648,004	-		DZA65_RS16875	0.15	-1.4
3,648,004	-		DZA65_RS16875	0.15	+2.2
3,648,025	-		DZA65_RS16875	0.23	-2.1
3,648,025	-		DZA65_RS16875	0.23	-0.1
3,648,025	-		DZA65_RS16875	0.23	-0.6
3,648,055	+		DZA65_RS16875	0.34	-2.3
3,648,056	-		DZA65_RS16875	0.35	-1.1
3,648,056	-		DZA65_RS16875	0.35	-2.4
3,648,056	-		DZA65_RS16875	0.35	+1.2
3,648,071	+		DZA65_RS16875	0.41	-0.1
3,648,072	-		DZA65_RS16875	0.41	-0.7
3,648,072	-		DZA65_RS16875	0.41	-1.6
3,648,072	-		DZA65_RS16875	0.41	-2.1
3,648,072	-		DZA65_RS16875	0.41	-2.6
3,648,097	+		DZA65_RS16875	0.51	-0.1
3,648,098	-		DZA65_RS16875	0.51	-0.8
3,648,098	-		DZA65_RS16875	0.51	-2.1
3,648,103	-		DZA65_RS16875	0.53	+1.1
3,648,156	+		DZA65_RS16875	0.73	-0.1
3,648,157	-		DZA65_RS16875	0.74	-0.1
3,648,216	+				-0.7
3,648,223	+				+0.6
3,648,223	+				-2.8
3,648,223	+				+2.2
3,648,223	+				-3.0
3,648,224	-				-0.1
3,648,224	-				-2.4
3,648,224	-				-1.9
3,648,224	-				-2.3
3,648,224	-				-1.1
3,648,224	-				-1.9
3,648,224	-				-0.9
3,648,254	+				-3.5
3,648,254	+				-0.1
3,648,284	+				-0.7
3,648,285	-				-2.4
3,648,285	-				+0.3
3,648,285	-				-0.7
3,648,367	+		DZA65_RS16880	0.30	+0.5
3,648,367	+		DZA65_RS16880	0.30	-1.9
3,648,367	+		DZA65_RS16880	0.30	+2.8
3,648,515	+		DZA65_RS16880	0.69	-2.3
3,648,770	+		DZA65_RS16885	0.19	+4.5
3,648,770	+		DZA65_RS16885	0.19	+0.9
3,648,770	+		DZA65_RS16885	0.19	+0.3
3,648,771	-		DZA65_RS16885	0.19	-0.1
3,648,771	-		DZA65_RS16885	0.19	+0.4
3,648,771	-		DZA65_RS16885	0.19	+0.9
3,648,775	+		DZA65_RS16885	0.19	-1.9
3,648,775	+		DZA65_RS16885	0.19	+0.4
3,648,776	-		DZA65_RS16885	0.20	+0.2
3,648,776	-		DZA65_RS16885	0.20	-0.7
3,648,824	-		DZA65_RS16885	0.26	-0.9
3,648,911	+		DZA65_RS16885	0.38	-2.4
3,648,911	+		DZA65_RS16885	0.38	-1.9
3,648,911	+		DZA65_RS16885	0.38	-2.3
3,648,911	+		DZA65_RS16885	0.38	-0.1
3,648,912	-		DZA65_RS16885	0.38	-1.1
3,648,913	+		DZA65_RS16885	0.38	-0.7
3,648,913	+				+1.2
3,648,913	+		DZA65_RS16885	0.38	-1.7
3,648,913	+		DZA65_RS16885	0.38	-1.7
3,649,205	+		DZA65_RS16885	0.78	-1.9
3,649,209	-		DZA65_RS16885	0.79	-0.1