Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16040

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,475,837	+		DZA65_RS16035	0.40	-2.9
3,475,850	-		DZA65_RS16035	0.41	-2.5
3,476,118	-				-1.1
3,476,147	+		DZA65_RS16035	0.59	-0.4
3,476,147	+		DZA65_RS16035	0.59	-0.7
3,476,339	+		DZA65_RS16035	0.71	+1.7
3,476,339	+		DZA65_RS16035	0.71	+2.0
3,476,339	+		DZA65_RS16035	0.71	+2.1
3,476,339	+		DZA65_RS16035	0.71	+0.6
3,476,340	-		DZA65_RS16035	0.71	+0.9
3,476,340	-				+0.3
3,476,340	-		DZA65_RS16035	0.71	+1.9
3,476,340	-		DZA65_RS16035	0.71	+1.3
3,476,340	-		DZA65_RS16035	0.71	-0.7
3,476,340	-		DZA65_RS16035	0.71	-1.9
3,476,416	+		DZA65_RS16035	0.75	+0.9
3,476,417	-		DZA65_RS16035	0.76	+1.5
3,476,515	+				+1.7
3,476,537	+		DZA65_RS16035	0.83	-0.1
3,476,538	-		DZA65_RS16035	0.83	-0.0
3,476,538	-		DZA65_RS16035	0.83	-1.1
3,476,545	+		DZA65_RS16035	0.83	-1.4
3,476,546	-		DZA65_RS16035	0.83	-1.4
3,476,733	+				-2.9
3,476,734	-				+0.3
3,476,762	+				+0.6
3,476,852	+				+0.4
3,476,852	+				-1.1
3,476,853	-				-3.9
3,476,853	-				-0.1
3,476,897	-				-1.4
3,476,897	-				-0.8
3,476,999	+				-0.2
3,477,000	-				-0.4
3,477,128	+		DZA65_RS16040	0.14	-0.2
3,477,205	+		DZA65_RS16040	0.18	+1.1
3,477,206	-		DZA65_RS16040	0.18	-1.1
3,477,280	+		DZA65_RS16040	0.22	-3.3
3,477,281	-		DZA65_RS16040	0.22	+2.3
3,477,281	-		DZA65_RS16040	0.22	+1.0
3,477,283	+		DZA65_RS16040	0.22	+1.5
3,477,283	+		DZA65_RS16040	0.22	-1.7
3,477,283	+		DZA65_RS16040	0.22	-0.0
3,477,283	+		DZA65_RS16040	0.22	+0.2
3,477,284	-		DZA65_RS16040	0.22	-2.3
3,477,284	-		DZA65_RS16040	0.22	-2.1
3,477,284	-		DZA65_RS16040	0.22	+0.8
3,477,377	+		DZA65_RS16040	0.26	+1.4
3,477,378	-		DZA65_RS16040	0.26	+0.9
3,477,378	-		DZA65_RS16040	0.26	+1.4
3,477,404	+		DZA65_RS16040	0.27	+1.9
3,477,404	+		DZA65_RS16040	0.27	-1.7
3,477,405	-		DZA65_RS16040	0.27	-0.1
3,477,405	-		DZA65_RS16040	0.27	-1.8
3,477,405	-		DZA65_RS16040	0.27	-0.1
3,477,525	+		DZA65_RS16040	0.33	-1.1
3,477,640	+		DZA65_RS16040	0.38	-0.7
3,477,654	+		DZA65_RS16040	0.39	+1.9
3,477,655	-		DZA65_RS16040	0.39	-1.7
3,477,689	+		DZA65_RS16040	0.40	+0.1
3,477,689	+		DZA65_RS16040	0.40	-1.1
3,477,689	+		DZA65_RS16040	0.40	-2.1
3,477,689	+		DZA65_RS16040	0.40	-1.9
3,477,689	+		DZA65_RS16040	0.40	-1.4
3,477,690	-		DZA65_RS16040	0.41	-1.9
3,477,690	-		DZA65_RS16040	0.41	-0.5
3,477,699	+		DZA65_RS16040	0.41	-1.7
3,477,699	+		DZA65_RS16040	0.41	-1.3
3,477,699	+		DZA65_RS16040	0.41	-0.4
3,477,700	-		DZA65_RS16040	0.41	+1.2
3,477,700	-		DZA65_RS16040	0.41	+1.5
3,477,700	-		DZA65_RS16040	0.41	-0.3
3,477,756	+		DZA65_RS16040	0.44	-1.4
3,477,756	+		DZA65_RS16040	0.44	-2.1
3,477,757	-		DZA65_RS16040	0.44	-1.1
3,477,757	-		DZA65_RS16040	0.44	+0.7
3,477,757	-		DZA65_RS16040	0.44	-0.4
3,477,789	+		DZA65_RS16040	0.45	-0.1
3,477,789	+		DZA65_RS16040	0.45	+1.9
3,477,789	+		DZA65_RS16040	0.45	-2.6
3,477,789	+		DZA65_RS16040	0.45	+0.7
3,477,789	+		DZA65_RS16040	0.45	+2.0
3,477,789	+		DZA65_RS16040	0.45	+1.9
3,477,789	+		DZA65_RS16040	0.45	-2.9
3,477,790	-		DZA65_RS16040	0.45	-1.7
3,477,790	-		DZA65_RS16040	0.45	-0.7
3,477,790	-		DZA65_RS16040	0.45	+0.5
3,477,790	-		DZA65_RS16040	0.45	-2.1
3,477,790	-		DZA65_RS16040	0.45	-1.4
3,477,790	-		DZA65_RS16040	0.45	-0.1
3,477,830	+		DZA65_RS16040	0.47	-1.6
3,477,873	+		DZA65_RS16040	0.49	+0.4
3,477,873	+		DZA65_RS16040	0.49	+0.5
3,478,061	+		DZA65_RS16040	0.58	+1.9
3,478,061	+		DZA65_RS16040	0.58	+0.1
3,478,061	+		DZA65_RS16040	0.58	-1.1
3,478,061	+		DZA65_RS16040	0.58	+1.6
3,478,061	+		DZA65_RS16040	0.58	-1.4
3,478,061	+		DZA65_RS16040	0.58	+4.2
3,478,061	+		DZA65_RS16040	0.58	-1.7
3,478,061	+		DZA65_RS16040	0.58	+1.3
3,478,061	+		DZA65_RS16040	0.58	+0.7
3,478,061	+		DZA65_RS16040	0.58	-0.1
3,478,062	-				-0.7
3,478,062	-		DZA65_RS16040	0.58	-2.4
3,478,062	-		DZA65_RS16040	0.58	-0.1
3,478,062	-		DZA65_RS16040	0.58	-0.1
3,478,062	-		DZA65_RS16040	0.58	-1.4
3,478,062	-		DZA65_RS16040	0.58	-3.0
3,478,062	-		DZA65_RS16040	0.58	-2.7
3,478,062	-		DZA65_RS16040	0.58	-1.7
3,478,062	-		DZA65_RS16040	0.58	-1.9
3,478,062	-		DZA65_RS16040	0.58	-1.4
3,478,062	-		DZA65_RS16040	0.58	-1.1
3,478,227	-		DZA65_RS16040	0.65	-1.6
3,478,294	+		DZA65_RS16040	0.69	-1.1
3,478,294	+		DZA65_RS16040	0.69	-0.6
3,478,295	-		DZA65_RS16040	0.69	+0.2
3,478,296	+		DZA65_RS16040	0.69	-1.0
3,478,296	+		DZA65_RS16040	0.69	-1.7
3,478,296	+		DZA65_RS16040	0.69	-2.6
3,478,296	+		DZA65_RS16040	0.69	+0.4
3,478,296	+		DZA65_RS16040	0.69	-0.7
3,478,297	-		DZA65_RS16040	0.69	-1.4
3,478,297	-		DZA65_RS16040	0.69	-2.6
3,478,297	-		DZA65_RS16040	0.69	-0.4
3,478,297	-		DZA65_RS16040	0.69	-0.7
3,478,297	-		DZA65_RS16040	0.69	-1.1
3,478,392	+		DZA65_RS16040	0.73	-1.3
3,478,393	-		DZA65_RS16040	0.73	+0.6
3,478,393	-		DZA65_RS16040	0.73	+0.5
3,478,839	+				-1.7
3,478,839	+				-1.0
3,478,839	+				+0.9
3,478,839	+				-1.4
3,478,839	+				+0.9
3,478,839	+				+0.3
3,478,839	+				-1.3
3,478,839	+				+3.2
3,478,839	+				+2.3
3,478,839	+				-1.9
3,478,839	+				-0.2
3,478,839	+				+0.9
3,478,840	-				-0.7
3,478,840	-				-2.5
3,478,840	-				+0.3
3,478,840	-				-0.5
3,478,840	-				+1.9
3,478,840	-				-2.1
3,478,840	-				-3.9
3,478,840	-				+2.2
3,478,840	-				-0.3
3,478,840	-				+0.0
3,478,840	-				+0.9
3,478,840	-				-1.3
3,478,840	-				+1.5
3,478,840	-				-0.1
3,478,952	+				+1.2
3,478,952	+				+0.7
3,478,952	+				-0.2
3,478,953	-				+0.1
3,478,953	-				-0.7
3,479,065	+				-2.9
3,479,065	+				-2.1
3,479,065	+				-1.1
3,479,065	+				+0.9
3,479,065	+				-1.1
3,479,065	+				-0.1
3,479,065	+				-0.1
3,479,065	+				+1.9
3,479,065	+				+2.5
3,479,065	+				+0.3
3,479,065	+				+0.5
3,479,065	+				-0.1
3,479,065	+				+0.4
3,479,065	+				+0.9
3,479,065	+				-2.1
3,479,065	+				+2.5
3,479,065	+				-1.7
3,479,065	+				+2.7
3,479,065	+				-2.4
3,479,065	+				-1.9
3,479,065	+				-1.1
3,479,065	+				-2.3
3,479,065	+				-3.2
3,479,065	+				-1.4
3,479,065	+				-0.7
3,479,065	+				+0.7
3,479,065	+				-2.8
3,479,065	+				+0.1
3,479,065	+				+1.7
3,479,065	+				-0.1
3,479,065	+				-0.6
3,479,065	+				-0.1
3,479,065	+				+0.9
3,479,065	+				+1.9
3,479,065	+				-1.4
3,479,065	+				+1.7
3,479,066	-				+0.2
3,479,066	-				+2.0
3,479,066	-				-1.9
3,479,066	-				-1.1
3,479,066	-				+0.9
3,479,066	-				+1.9
3,479,066	-				-0.5
3,479,066	-				+1.0
3,479,066	-				+1.5
3,479,066	-				-0.7
3,479,066	-				-1.9
3,479,066	-				-1.7
3,479,066	-				-0.3
3,479,066	-				-0.1
3,479,066	-				+2.4
3,479,066	-				-0.4
3,479,066	-				-1.3
3,479,066	-				-1.4
3,479,066	-				+0.5
3,479,066	-				-0.9
3,479,066	-				-0.4
3,479,066	-				-0.1
3,479,066	-				-1.9
3,479,066	-				+0.9
3,479,066	-				-3.7
3,479,066	-				+1.9
3,479,066	-				+0.3
3,479,066	-				+0.2
3,479,066	-				-2.3
3,479,066	-				+3.1
3,479,077	-				-0.2
3,479,084	+				-3.6
3,479,085	-				+1.3
3,479,085	-				-0.5
3,479,087	+				+3.0
3,479,088	-				-0.9
3,479,098	+				-1.0
3,479,098	+				+1.0
3,479,099	-				+2.5
3,479,122	+				+0.8
3,479,122	+				-1.7
3,479,123	-				-1.8
3,479,150	+				-0.3
3,479,150	+				-0.9
3,479,150	+				-0.5
3,479,151	-				-0.9
3,479,151	-				-1.7
3,479,151	-				-1.2
3,479,151	-				-1.6
3,479,151	-				+1.3
3,479,151	-				+2.3
3,479,151	-				+0.4
3,479,151	-				-1.3
3,479,151	-				-1.9
3,479,151	-				-1.7
3,479,151	-				-0.7
3,479,154	+				+1.6
3,479,155	-				-1.7
3,479,155	-				-1.9
3,479,155	-				-1.9
3,479,155	-				-1.7
3,479,155	-				-0.1
3,479,155	-				+1.3
3,479,157	+				+1.5
3,479,157	+				+3.0
3,479,158	-				+1.9
3,479,158	-				+1.6
3,479,158	-				+0.9
3,479,158	-				-2.3
3,479,158	-				+0.4
3,479,158	-				-1.1
3,479,158	-				+1.6
3,479,161	+				-2.8
3,479,161	+				+0.3
3,479,161	+				-0.7
3,479,161	+				+1.4
3,479,162	-				+0.2
3,479,162	-				+0.5
3,479,162	-				+1.0
3,479,162	-				+1.9
3,479,162	-				-0.7
3,479,167	+				-2.4
3,479,167	+				-1.7
3,479,167	+				-0.1
3,479,167	+				-2.3
3,479,167	+				-1.4
3,479,167	+				+1.4
3,479,167	+				+1.4
3,479,167	+				+1.5
3,479,168	-				-1.4
3,479,177	+				+0.9
3,479,177	+				+0.3
3,479,178	-				+3.1
3,479,178	-				+1.1
3,479,179	-				-0.1
3,479,183	-				+1.3
3,479,213	+				-0.7
3,479,213	+				-0.9
3,479,213	+				+4.7
3,479,217	+				-1.4
3,479,318	+				-2.1
3,479,318	+				+1.6
3,479,477	+		DZA65_RS16045	0.14	-1.7
3,479,478	-		DZA65_RS16045	0.14	+0.0
3,479,478	-		DZA65_RS16045	0.14	-1.1
3,479,616	+		DZA65_RS16045	0.20	-1.1
3,479,654	+		DZA65_RS16045	0.22	-1.1
3,479,654	+		DZA65_RS16045	0.22	-0.1
3,479,654	+		DZA65_RS16045	0.22	+0.5
3,479,654	+		DZA65_RS16045	0.22	-1.1
3,479,654	+		DZA65_RS16045	0.22	-2.3
3,479,654	+		DZA65_RS16045	0.22	-2.4
3,479,655	-		DZA65_RS16045	0.22	+0.3
3,479,660	+		DZA65_RS16045	0.22	-1.7
3,479,660	+		DZA65_RS16045	0.22	+0.9
3,479,797	+		DZA65_RS16045	0.29	-0.1
3,479,861	+		DZA65_RS16045	0.32	+0.2
3,479,862	-		DZA65_RS16045	0.32	+1.4