Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12880

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,759,229	-				-1.1
2,759,270	+				-1.9
2,759,271	-				+1.3
2,759,310	+				-0.0
2,759,332	+				-0.3
2,759,332	+				-0.8
2,759,332	+				+2.3
2,759,332	+				-0.9
2,759,332	+				+2.6
2,759,332	+				-0.1
2,759,332	+				+0.8
2,759,332	+				+0.2
2,759,332	+				+0.7
2,759,332	+				-1.6
2,759,332	+				-1.1
2,759,332	+				+0.3
2,759,332	+				-1.3
2,759,333	-				+0.2
2,759,333	-				+1.3
2,759,333	-				-1.9
2,759,333	-				-1.6
2,759,333	-				+1.7
2,759,378	-				+2.0
2,759,463	+		DZA65_RS12875	0.25	+0.7
2,759,489	+		DZA65_RS12875	0.30	-1.3
2,759,535	-		DZA65_RS12875	0.39	-1.6
2,759,564	+		DZA65_RS12875	0.45	+0.7
2,759,567	+		DZA65_RS12875	0.46	-0.3
2,759,567	+		DZA65_RS12875	0.46	-1.6
2,759,568	-		DZA65_RS12875	0.46	+0.7
2,759,568	-		DZA65_RS12875	0.46	+2.3
2,759,689	-		DZA65_RS12875	0.70	-3.0
2,759,772	+		DZA65_RS12875	0.86	-0.6
2,759,772	+		DZA65_RS12875	0.86	+1.3
2,759,772	+		DZA65_RS12875	0.86	+0.5
2,759,772	+		DZA65_RS12875	0.86	-1.6
2,759,772	+		DZA65_RS12875	0.86	-0.3
2,759,773	-		DZA65_RS12875	0.87	+1.7
2,759,811	+				-2.5
2,759,811	+				-0.6
2,759,811	+				-0.9
2,759,812	-				-1.4
2,759,812	-				-0.1
2,759,838	+				-2.1
2,759,839	-				-1.3
2,759,839	-				-1.3
2,759,864	-				-2.8
2,759,869	+				+2.0
2,759,869	+				+0.8
2,759,869	+				+0.7
2,759,869	+				-2.1
2,759,869	+				+1.0
2,759,869	+				-0.9
2,759,870	-				+0.7
2,759,870	-				-0.1
2,759,870	-				-1.1
2,759,870	-				-0.8
2,759,870	-				-4.2
2,759,888	-				-1.3
2,759,888	-				-1.3
2,759,899	+				-3.0
2,759,932	-				+1.3
2,759,932	-				+0.0
2,759,932	-				+0.1
2,759,935	+				+0.0
2,759,935	+				-1.0
2,759,935	+				-1.3
2,759,936	-				-2.1
2,759,936	-				-3.9
2,759,936	-				+1.1
2,759,936	-				+1.4
2,759,936	-				-0.6
2,759,985	+				-0.5
2,759,986	-				-2.1
2,760,015	+				-2.6
2,760,025	-				+2.3
2,760,105	+				-1.6
2,760,105	+				-2.5
2,760,223	+		DZA65_RS12880	0.18	-0.3
2,760,239	+		DZA65_RS12880	0.19	+0.7
2,760,239	+		DZA65_RS12880	0.19	-2.1
2,760,239	+		DZA65_RS12880	0.19	+2.3
2,760,428	-		DZA65_RS12880	0.33	+0.9
2,760,428	-		DZA65_RS12880	0.33	-1.6
2,760,428	-		DZA65_RS12880	0.33	+0.3
2,760,428	-		DZA65_RS12880	0.33	-1.9
2,760,474	-		DZA65_RS12880	0.36	-3.8
2,760,499	+		DZA65_RS12880	0.38	-0.6
2,760,499	+		DZA65_RS12880	0.38	+1.7
2,760,500	-		DZA65_RS12880	0.38	-1.3
2,760,500	-		DZA65_RS12880	0.38	-1.5
2,760,500	-		DZA65_RS12880	0.38	+1.6
2,760,515	+		DZA65_RS12880	0.39	-0.5
2,760,515	+		DZA65_RS12880	0.39	-1.3
2,760,515	+		DZA65_RS12880	0.39	-0.5
2,760,516	-		DZA65_RS12880	0.39	-2.8
2,760,516	-		DZA65_RS12880	0.39	-2.3
2,760,516	-		DZA65_RS12880	0.39	-2.1
2,760,600	+		DZA65_RS12880	0.45	-0.6
2,760,723	+		DZA65_RS12880	0.54	-0.3
2,760,723	+		DZA65_RS12880	0.54	-2.1
2,760,723	+		DZA65_RS12880	0.54	-2.8
2,760,723	+		DZA65_RS12880	0.54	+1.2
2,760,724	-		DZA65_RS12880	0.54	-0.9
2,760,724	-		DZA65_RS12880	0.54	-1.9
2,760,764	+		DZA65_RS12880	0.57	+0.7
2,760,765	-		DZA65_RS12880	0.57	+1.0
2,760,952	+		DZA65_RS12880	0.70	+1.0
2,761,207	+		DZA65_RS12880	0.88	-2.6
2,761,207	+		DZA65_RS12880	0.88	+0.2
2,761,207	+		DZA65_RS12880	0.88	-0.5
2,761,208	-		DZA65_RS12880	0.88	-0.3
2,761,208	-		DZA65_RS12880	0.88	-0.3
2,761,208	-		DZA65_RS12880	0.88	-1.3
2,761,382	+				-0.8
2,761,383	-				+0.4
2,761,394	+				+1.6
2,761,411	+				-1.1
2,761,412	-				-0.6
2,761,412	-				-1.2
2,761,429	-				+0.2
2,761,459	-				-1.6
2,761,467	+				+0.7
2,761,468	-				-2.3
2,761,468	-				+0.1
2,761,468	-				+0.1
2,761,468	-				-1.9
2,761,510	+				+1.0
2,761,552	+				+0.0
2,761,560	+				-1.6
2,761,561	-				-1.6
2,761,616	-		DZA65_RS12885	0.12	-0.4
2,761,616	-		DZA65_RS12885	0.12	+0.0
2,761,616	-		DZA65_RS12885	0.12	-1.6
2,761,616	-		DZA65_RS12885	0.12	+3.6
2,761,672	-		DZA65_RS12885	0.18	+2.9
2,761,711	+		DZA65_RS12885	0.22	+0.6
2,761,711	+		DZA65_RS12885	0.22	+1.9
2,761,711	+		DZA65_RS12885	0.22	-0.1
2,761,711	+		DZA65_RS12885	0.22	-0.3
2,761,711	+		DZA65_RS12885	0.22	+2.4
2,761,712	-		DZA65_RS12885	0.22	-1.6
2,761,718	+		DZA65_RS12885	0.23	-1.1
2,761,718	+		DZA65_RS12885	0.23	-2.1
2,761,719	-		DZA65_RS12885	0.23	-1.9
2,761,719	-		DZA65_RS12885	0.23	-1.6
2,761,719	-		DZA65_RS12885	0.23	-1.9
2,761,822	+		DZA65_RS12885	0.35	-1.0
2,761,823	-		DZA65_RS12885	0.35	-1.6
2,761,894	+		DZA65_RS12885	0.43	+2.6
2,761,895	-		DZA65_RS12885	0.43	+0.2
2,761,895	-		DZA65_RS12885	0.43	-1.3
2,761,895	-		DZA65_RS12885	0.43	-1.3
2,761,895	-		DZA65_RS12885	0.43	-1.6
2,761,950	+		DZA65_RS12885	0.49	+3.6
2,761,950	+		DZA65_RS12885	0.49	-1.6
2,761,951	-		DZA65_RS12885	0.49	-0.9
2,761,951	-		DZA65_RS12885	0.49	+0.0
2,762,026	+		DZA65_RS12885	0.57	-1.3
2,762,026	+		DZA65_RS12885	0.57	+1.7
2,762,027	-		DZA65_RS12885	0.57	-1.6
2,762,027	-				+2.0
2,762,242	+		DZA65_RS12885	0.81	+2.1
2,762,242	+		DZA65_RS12885	0.81	-1.9
2,762,242	+		DZA65_RS12885	0.81	-0.6
2,762,270	-		DZA65_RS12885	0.84	-1.6
2,762,270	-		DZA65_RS12885	0.84	-1.3
2,762,333	+				-0.9
2,762,333	+				+0.7
2,762,333	+				-2.6
2,762,333	+				-2.6
2,762,333	+				-2.1
2,762,333	+				+1.2
2,762,333	+				-0.4
2,762,333	+				-0.3
2,762,333	+				+0.2
2,762,334	-				+0.0
2,762,334	-				-1.3
2,762,334	-				+0.2
2,762,334	-				-1.1
2,762,334	-				+0.7