Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12480

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,669,679	+		DZA65_RS12475	0.18	-1.1
2,669,727	+		DZA65_RS12475	0.23	-1.3
2,669,758	+		DZA65_RS12475	0.26	-0.9
2,669,758	+		DZA65_RS12475	0.26	-1.3
2,669,759	-		DZA65_RS12475	0.26	-2.5
2,669,759	-		DZA65_RS12475	0.26	+1.0
2,669,759	-		DZA65_RS12475	0.26	-2.7
2,669,827	-		DZA65_RS12475	0.32	+0.3
2,669,827	-		DZA65_RS12475	0.32	-1.7
2,669,842	+		DZA65_RS12475	0.34	-0.7
2,669,842	+		DZA65_RS12475	0.34	+1.0
2,669,842	+		DZA65_RS12475	0.34	-0.4
2,669,842	+		DZA65_RS12475	0.34	-0.7
2,669,842	+		DZA65_RS12475	0.34	+2.7
2,669,842	+		DZA65_RS12475	0.34	+0.7
2,669,842	+		DZA65_RS12475	0.34	-1.3
2,669,843	-		DZA65_RS12475	0.34	-1.7
2,669,843	-		DZA65_RS12475	0.34	+0.7
2,669,843	-		DZA65_RS12475	0.34	-1.1
2,669,843	-		DZA65_RS12475	0.34	-0.1
2,669,843	-		DZA65_RS12475	0.34	-1.3
2,669,843	-		DZA65_RS12475	0.34	-1.3
2,669,843	-		DZA65_RS12475	0.34	+0.0
2,669,843	-		DZA65_RS12475	0.34	+0.1
2,669,843	-		DZA65_RS12475	0.34	+2.2
2,670,121	+		DZA65_RS12475	0.61	-3.0
2,670,121	+		DZA65_RS12475	0.61	-2.3
2,670,121	+		DZA65_RS12475	0.61	-1.7
2,670,121	+		DZA65_RS12475	0.61	-1.7
2,670,121	+		DZA65_RS12475	0.61	+0.1
2,670,122	-		DZA65_RS12475	0.61	-2.1
2,670,122	-		DZA65_RS12475	0.61	-3.1
2,670,122	-		DZA65_RS12475	0.61	+0.9
2,670,127	+		DZA65_RS12475	0.62	-1.7
2,670,128	-		DZA65_RS12475	0.62	-1.5
2,670,128	-		DZA65_RS12475	0.62	-0.3
2,670,128	-		DZA65_RS12475	0.62	-1.3
2,670,144	+		DZA65_RS12475	0.63	-1.1
2,670,145	-		DZA65_RS12475	0.63	-0.6
2,670,163	+		DZA65_RS12475	0.65	-0.0
2,670,164	-		DZA65_RS12475	0.65	+0.4
2,670,196	+		DZA65_RS12475	0.68	-1.0
2,670,197	-		DZA65_RS12475	0.68	-0.6
2,670,254	+		DZA65_RS12475	0.74	+1.3
2,670,262	+		DZA65_RS12475	0.75	-1.9
2,670,262	+		DZA65_RS12475	0.75	+0.1
2,670,263	-		DZA65_RS12475	0.75	-3.0
2,670,263	-		DZA65_RS12475	0.75	+0.3
2,670,263	-		DZA65_RS12475	0.75	-1.3
2,670,433	-				-2.0
2,670,520	+				+1.6
2,670,520	+				+0.2
2,670,521	-				-0.2
2,670,521	-				+4.3
2,670,521	-				+1.8
2,670,599	+				-1.7
2,670,599	+				-0.3
2,670,599	+				-3.0
2,670,599	+				-1.3
2,670,599	+				+1.3
2,670,600	-				-1.3
2,670,600	-				-1.7
2,670,600	-				-1.9
2,670,600	-				-2.5
2,670,619	+				-2.0
2,670,619	+				-0.9
2,670,643	+				-1.3
2,670,643	+				-1.7
2,670,643	+				-2.3
2,670,660	+				-2.5
2,670,660	+				-2.2
2,670,660	+				-3.2
2,670,660	+				-3.5
2,670,660	+				-1.9
2,670,660	+				-1.6
2,670,660	+				-1.2
2,670,660	+				-1.2
2,670,660	+				-0.9
2,670,660	+				+1.9
2,670,661	-				-0.7
2,670,661	-				-0.4
2,670,661	-				-2.5
2,670,661	-				-0.3
2,670,769	+		DZA65_RS12480	0.12	-0.3
2,670,769	+		DZA65_RS12480	0.12	-0.9
2,670,770	-		DZA65_RS12480	0.12	-0.9
2,670,770	-		DZA65_RS12480	0.12	-1.9
2,670,770	-		DZA65_RS12480	0.12	+0.1
2,670,770	-		DZA65_RS12480	0.12	-0.9
2,670,806	-		DZA65_RS12480	0.14	-2.7
2,671,119	+		DZA65_RS12480	0.37	-1.3
2,671,119	+		DZA65_RS12480	0.37	+0.4
2,671,119	+		DZA65_RS12480	0.37	+0.2
2,671,119	+		DZA65_RS12480	0.37	-2.2
2,671,120	-		DZA65_RS12480	0.37	-2.2
2,671,129	+		DZA65_RS12480	0.38	-2.7
2,671,209	+		DZA65_RS12480	0.43	-1.3
2,671,209	+		DZA65_RS12480	0.43	-2.3
2,671,209	+		DZA65_RS12480	0.43	-0.3
2,671,209	+		DZA65_RS12480	0.43	-0.9
2,671,209	+		DZA65_RS12480	0.43	-0.9
2,671,209	+		DZA65_RS12480	0.43	-2.2
2,671,209	+		DZA65_RS12480	0.43	-0.9
2,671,209	+		DZA65_RS12480	0.43	+2.7
2,671,209	+		DZA65_RS12480	0.43	-1.7
2,671,209	+		DZA65_RS12480	0.43	-0.3
2,671,209	+		DZA65_RS12480	0.43	+0.7
2,671,209	+		DZA65_RS12480	0.43	+0.0
2,671,209	+		DZA65_RS12480	0.43	-0.5
2,671,209	+		DZA65_RS12480	0.43	-2.7
2,671,209	+		DZA65_RS12480	0.43	+0.7
2,671,209	+		DZA65_RS12480	0.43	-1.9
2,671,210	-		DZA65_RS12480	0.43	-1.7
2,671,210	-		DZA65_RS12480	0.43	-1.5
2,671,210	-		DZA65_RS12480	0.43	-2.5
2,671,210	-		DZA65_RS12480	0.43	-2.2
2,671,210	-		DZA65_RS12480	0.43	-3.0
2,671,210	-		DZA65_RS12480	0.43	-1.9
2,671,210	-		DZA65_RS12480	0.43	-0.3
2,671,210	-		DZA65_RS12480	0.43	-1.7
2,671,210	-		DZA65_RS12480	0.43	-1.7
2,671,210	-		DZA65_RS12480	0.43	-1.2
2,671,210	-		DZA65_RS12480	0.43	-2.3
2,671,210	-		DZA65_RS12480	0.43	-0.1
2,671,214	+		DZA65_RS12480	0.44	-0.3
2,671,214	+				-0.9
2,671,214	+		DZA65_RS12480	0.44	-0.3
2,671,214	+		DZA65_RS12480	0.44	-1.8
2,671,214	+		DZA65_RS12480	0.44	-1.9
2,671,214	+		DZA65_RS12480	0.44	+2.0
2,671,215	-		DZA65_RS12480	0.44	+0.8
2,671,215	-		DZA65_RS12480	0.44	-0.9
2,671,265	+		DZA65_RS12480	0.47	-0.6
2,671,265	+		DZA65_RS12480	0.47	-0.8
2,671,266	-		DZA65_RS12480	0.47	+1.2
2,671,325	-		DZA65_RS12480	0.52	+0.1
2,671,445	+		DZA65_RS12480	0.60	-2.2
2,671,446	-		DZA65_RS12480	0.60	-2.7
2,671,588	+		DZA65_RS12480	0.71	-3.0
2,671,588	+		DZA65_RS12480	0.71	-2.3
2,671,720	-		DZA65_RS12480	0.80	-3.2
2,671,768	+		DZA65_RS12480	0.84	-0.9
2,671,768	+		DZA65_RS12480	0.84	-1.3
2,671,768	+		DZA65_RS12480	0.84	+0.3
2,671,769	-		DZA65_RS12480	0.84	+0.4
2,671,769	-		DZA65_RS12480	0.84	+0.3
2,671,769	-		DZA65_RS12480	0.84	-0.3
2,671,804	+		DZA65_RS12480	0.86	-0.1
2,671,805	-		DZA65_RS12480	0.86	+1.2
2,671,952	-				-1.7
2,671,996	+				-0.3
2,671,996	+				+1.7
2,671,997	-				+0.7
2,671,997	-				-0.3
2,671,997	-				+1.1
2,672,019	+				-1.9
2,672,020	-				-0.2
2,672,043	+				-1.3
2,672,043	+				-1.5
2,672,043	+				-2.2
2,672,043	+				-2.3
2,672,043	+				+0.5
2,672,043	+				-0.9
2,672,043	+				-0.9
2,672,044	-				+1.0
2,672,044	-				-2.8
2,672,044	-				-1.3
2,672,044	-				-1.7
2,672,072	+				+0.5
2,672,072	+				-0.3
2,672,072	+				-0.7
2,672,073	-				-2.2
2,672,127	+				-0.7
2,672,127	+				-1.3
2,672,127	+				-2.6
2,672,132	-				-2.2
2,672,132	-				-0.9
2,672,171	+				-2.3
2,672,172	-				+1.1
2,672,198	+				-3.2
2,672,198	+				+0.7
2,672,325	+				+2.5
2,672,325	+				-1.7
2,672,326	-				-2.1
2,672,347	+				-0.3
2,672,347	+				+0.6
2,672,350	+				-0.3
2,672,350	+				-3.0
2,672,350	+				-0.3
2,672,350	+				+2.7
2,672,350	+				-1.9
2,672,351	-				+0.3
2,672,351	-				-0.9
2,672,351	-				-1.3
2,672,351	-				-3.4
2,672,351	-				+0.7
2,672,351	-				-0.9
2,672,364	+				-0.3
2,672,365	-				-2.5
2,672,366	+				+0.5
2,672,366	+				+0.7
2,672,366	+				+1.4
2,672,366	+				-2.5
2,672,367	-				-2.3
2,672,374	-				-3.4
2,672,589	-				-0.9
2,672,633	+		DZA65_RS12485	0.12	-2.9
2,672,633	+		DZA65_RS12485	0.12	-0.3
2,672,633	+		DZA65_RS12485	0.12	+0.7
2,672,729	+		DZA65_RS12485	0.17	-0.6
2,672,746	+		DZA65_RS12485	0.18	+0.7
2,672,746	+		DZA65_RS12485	0.18	-0.2
2,672,747	-		DZA65_RS12485	0.18	-2.3
2,672,747	-		DZA65_RS12485	0.18	-1.7
2,672,862	+		DZA65_RS12485	0.25	-1.1
2,672,893	+		DZA65_RS12485	0.26	+0.1
2,672,934	-		DZA65_RS12485	0.29	-1.3
2,672,965	+		DZA65_RS12485	0.30	-1.3