Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11220

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,376,057	+		DZA65_RS11215	0.66	-0.1
2,376,058	-		DZA65_RS11215	0.66	+1.1
2,376,126	+		DZA65_RS11215	0.70	+0.4
2,376,127	-		DZA65_RS11215	0.70	+2.4
2,376,127	-		DZA65_RS11215	0.70	-3.4
2,376,127	-		DZA65_RS11215	0.70	+4.1
2,376,206	+		DZA65_RS11215	0.74	+0.6
2,376,207	-		DZA65_RS11215	0.74	-2.4
2,376,303	+		DZA65_RS11215	0.80	-1.0
2,376,427	+		DZA65_RS11215	0.86	+0.9
2,376,428	-		DZA65_RS11215	0.86	-2.2
2,376,428	-		DZA65_RS11215	0.86	-1.7
2,376,430	+		DZA65_RS11215	0.86	-1.6
2,376,430	+		DZA65_RS11215	0.86	-2.4
2,376,430	+		DZA65_RS11215	0.86	-1.7
2,376,431	-		DZA65_RS11215	0.86	+0.9
2,376,439	-		DZA65_RS11215	0.87	+0.8
2,376,517	+				-1.4
2,376,517	+				-1.4
2,376,517	+				+1.1
2,376,517	+				-1.7
2,376,517	+				-1.0
2,376,517	+				-1.4
2,376,517	+				+0.6
2,376,517	+				-1.7
2,376,517	+				-0.5
2,376,517	+				+0.3
2,376,517	+				+1.1
2,376,517	+				+0.2
2,376,518	-				-0.1
2,376,518	-				-0.1
2,376,518	-				+0.2
2,376,518	-				+0.3
2,376,518	-				+0.2
2,376,518	-				-1.6
2,376,518	-				+0.3
2,376,518	-				-0.1
2,376,518	-				+0.6
2,376,518	-				-1.0
2,376,518	-				-2.4
2,376,518	-				+1.6
2,376,518	-				+1.0
2,376,518	-				+1.3
2,376,518	-				-2.2
2,376,518	-				-3.7
2,376,518	-				-0.8
2,376,518	-				-2.4
2,376,520	+				-2.0
2,376,520	+				+0.0
2,376,520	+				+3.8
2,376,520	+				-0.4
2,376,520	+				+2.8
2,376,521	-				+0.8
2,376,521	-				-0.5
2,376,521	-				+0.6
2,376,523	-				-2.9
2,376,583	+				-0.7
2,376,632	-				+2.3
2,376,683	-				+2.8
2,376,683	-				+0.6
2,376,704	+				-0.6
2,376,704	+				-1.3
2,376,704	+				+0.0
2,376,705	-				-1.6
2,376,822	+				-2.9
2,376,822	+				-0.0
2,376,822	+				-1.4
2,376,822	+				+0.6
2,376,823	-				+0.6
2,376,823	-				-1.1
2,376,823	-				+0.9
2,376,850	+				-0.4
2,376,850	+				-1.7
2,376,888	+				-1.4
2,376,915	+				+1.9
2,376,918	-				+0.1
2,376,918	-				-2.2
2,376,918	-				-0.9
2,376,932	-				-1.0
2,376,957	-				+1.5
2,376,985	+				+0.8
2,376,985	+				+0.5
2,376,985	+				+0.6
2,376,985	+				+3.6
2,376,986	-				+1.6
2,376,991	+				+0.4
2,376,991	+				-2.4
2,376,991	+				+0.1
2,376,992	-				-0.4
2,377,002	+				+3.5
2,377,002	+				-2.1
2,377,002	+				-0.6
2,377,002	+				-0.4
2,377,002	+				-2.2
2,377,002	+				-2.2
2,377,002	+				+1.7
2,377,003	-				-1.7
2,377,003	-				+2.9
2,377,003	-				-0.4
2,377,003	-				-2.9
2,377,072	+				-0.7
2,377,073	-				-3.8
2,377,205	-		DZA65_RS11220	0.14	+1.0
2,377,272	+		DZA65_RS11220	0.19	-1.4
2,377,272	+		DZA65_RS11220	0.19	+0.6
2,377,273	-		DZA65_RS11220	0.19	-2.0
2,377,302	+		DZA65_RS11220	0.21	-1.4
2,377,302	+		DZA65_RS11220	0.21	+0.6
2,377,302	+		DZA65_RS11220	0.21	-2.0
2,377,498	+		DZA65_RS11220	0.35	-2.0
2,377,508	-		DZA65_RS11220	0.35	+1.4
2,377,524	-		DZA65_RS11220	0.36	+1.3
2,377,524	-		DZA65_RS11220	0.36	+0.6
2,377,596	+		DZA65_RS11220	0.41	-0.4
2,377,597	-		DZA65_RS11220	0.42	-1.0
2,377,629	+		DZA65_RS11220	0.44	+3.3
2,377,629	+		DZA65_RS11220	0.44	+1.3
2,377,630	-		DZA65_RS11220	0.44	-2.0
2,377,630	-		DZA65_RS11220	0.44	-0.4
2,377,651	+		DZA65_RS11220	0.45	+0.4
2,377,668	+		DZA65_RS11220	0.47	+1.8
2,377,669	-		DZA65_RS11220	0.47	-0.6
2,377,758	+		DZA65_RS11220	0.53	+1.7
2,377,758	+		DZA65_RS11220	0.53	+1.4
2,377,759	-		DZA65_RS11220	0.53	-1.5
2,377,759	-		DZA65_RS11220	0.53	-3.6
2,377,794	+		DZA65_RS11220	0.55	-2.4
2,377,795	-		DZA65_RS11220	0.55	+0.5
2,377,795	-		DZA65_RS11220	0.55	+2.7
2,377,808	-		DZA65_RS11220	0.56	+0.2
2,377,808	-		DZA65_RS11220	0.56	-0.4
2,377,808	-		DZA65_RS11220	0.56	-1.7
2,377,808	-		DZA65_RS11220	0.56	+1.6
2,377,809	+		DZA65_RS11220	0.56	-2.0
2,377,809	+		DZA65_RS11220	0.56	-2.0
2,377,809	+		DZA65_RS11220	0.56	+0.3
2,377,809	+		DZA65_RS11220	0.56	-1.2
2,377,810	-		DZA65_RS11220	0.56	+0.4
2,377,810	-				-2.0
2,377,810	-		DZA65_RS11220	0.56	+1.8
2,377,810	-		DZA65_RS11220	0.56	+1.1
2,377,834	+		DZA65_RS11220	0.58	+1.2
2,377,836	+		DZA65_RS11220	0.58	+0.0
2,377,837	-		DZA65_RS11220	0.58	+1.1
2,377,837	-		DZA65_RS11220	0.58	+1.6
2,377,938	+		DZA65_RS11220	0.65	+3.1
2,377,938	+		DZA65_RS11220	0.65	+0.6
2,377,938	+		DZA65_RS11220	0.65	+1.7
2,377,938	+		DZA65_RS11220	0.65	+0.3
2,377,938	+		DZA65_RS11220	0.65	+1.1
2,377,938	+		DZA65_RS11220	0.65	-0.3
2,377,939	-		DZA65_RS11220	0.65	-1.7
2,377,939	-		DZA65_RS11220	0.65	+0.7
2,377,939	-		DZA65_RS11220	0.65	+0.0
2,377,939	-		DZA65_RS11220	0.65	+0.8
2,377,939	-		DZA65_RS11220	0.65	-2.2
2,377,939	-		DZA65_RS11220	0.65	+1.6
2,377,955	-		DZA65_RS11220	0.67	-1.2
2,377,983	+		DZA65_RS11220	0.68	+0.3
2,377,984	-				-2.2
2,377,989	+		DZA65_RS11220	0.69	+0.6
2,377,990	-		DZA65_RS11220	0.69	-1.6
2,377,990	-		DZA65_RS11220	0.69	-0.6
2,377,990	-		DZA65_RS11220	0.69	+0.3
2,378,000	-		DZA65_RS11220	0.70	+1.3
2,378,005	-		DZA65_RS11220	0.70	+1.3
2,378,033	-		DZA65_RS11220	0.72	-0.7
2,378,034	+		DZA65_RS11220	0.72	-2.2
2,378,034	+		DZA65_RS11220	0.72	-2.4
2,378,034	+		DZA65_RS11220	0.72	+1.2
2,378,035	-		DZA65_RS11220	0.72	-2.2
2,378,035	-		DZA65_RS11220	0.72	-0.4
2,378,035	-		DZA65_RS11220	0.72	+1.5
2,378,234	+		DZA65_RS11220	0.86	+1.2
2,378,234	+		DZA65_RS11220	0.86	-0.9
2,378,234	+		DZA65_RS11220	0.86	-2.6
2,378,235	-		DZA65_RS11220	0.86	-0.7
2,378,451	+				+0.6
2,378,455	+				-0.8
2,378,456	-				+2.9
2,378,577	+				-2.0
2,379,074	+		DZA65_RS11225	0.14	-1.4
2,379,075	-		DZA65_RS11225	0.14	+1.9
2,379,075	-		DZA65_RS11225	0.14	+1.2
2,379,109	+		DZA65_RS11225	0.17	+2.8
2,379,110	-		DZA65_RS11225	0.17	-1.4
2,379,110	-		DZA65_RS11225	0.17	-1.0
2,379,152	+		DZA65_RS11225	0.20	-0.4
2,379,152	+				+1.8
2,379,152	+		DZA65_RS11225	0.20	+1.1
2,379,152	+		DZA65_RS11225	0.20	-1.0
2,379,152	+		DZA65_RS11225	0.20	+2.8
2,379,152	+		DZA65_RS11225	0.20	-0.7
2,379,153	-		DZA65_RS11225	0.20	+1.0
2,379,153	-		DZA65_RS11225	0.20	+0.4
2,379,153	-		DZA65_RS11225	0.20	-1.4
2,379,153	-		DZA65_RS11225	0.20	+0.2
2,379,153	-		DZA65_RS11225	0.20	+0.0
2,379,153	-		DZA65_RS11225	0.20	+2.0
2,379,231	+		DZA65_RS11225	0.25	+0.4
2,379,231	+		DZA65_RS11225	0.25	+1.8
2,379,232	-		DZA65_RS11225	0.25	-3.1
2,379,232	-		DZA65_RS11225	0.25	-1.5
2,379,232	-		DZA65_RS11225	0.25	-0.8
2,379,232	-		DZA65_RS11225	0.25	+0.1
2,379,320	+		DZA65_RS11225	0.31	-2.6
2,379,321	-		DZA65_RS11225	0.31	-2.4