Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08715

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,844,724	+				+1.1
1,844,742	+				-1.4
1,844,742	+				-2.8
1,844,742	+				+0.7
1,844,743	-				-1.6
1,844,743	-				-1.3
1,844,760	+				-0.9
1,844,760	+				+3.4
1,844,760	+				-0.9
1,844,761	-				+0.9
1,844,765	+				-0.9
1,844,765	+				-3.3
1,844,765	+				+0.3
1,844,765	+				+0.5
1,844,765	+				+1.6
1,844,765	+				-2.6
1,844,765	+				+0.6
1,844,765	+				-1.3
1,844,765	+				-2.1
1,844,765	+				+1.7
1,844,766	-				-0.9
1,844,766	-				-0.3
1,844,766	-				-0.9
1,844,766	-				+0.2
1,844,766	-				-0.8
1,844,769	-				+0.3
1,844,778	+				-0.0
1,844,778	+				-1.6
1,844,865	-				-2.5
1,844,894	+		DZA65_RS08710	0.13	-0.9
1,844,894	+		DZA65_RS08710	0.13	-1.6
1,844,894	+		DZA65_RS08710	0.13	-2.0
1,844,894	+		DZA65_RS08710	0.13	+0.1
1,844,935	+		DZA65_RS08710	0.18	+2.8
1,844,936	-		DZA65_RS08710	0.18	-1.1
1,845,058	+		DZA65_RS08710	0.33	-2.1
1,845,058	+		DZA65_RS08710	0.33	-0.8
1,845,058	+		DZA65_RS08710	0.33	+1.2
1,845,058	+		DZA65_RS08710	0.33	+0.7
1,845,058	+		DZA65_RS08710	0.33	+1.9
1,845,058	+		DZA65_RS08710	0.33	+2.6
1,845,059	-		DZA65_RS08710	0.33	-0.9
1,845,059	-		DZA65_RS08710	0.33	-2.1
1,845,059	-		DZA65_RS08710	0.33	-1.3
1,845,059	-		DZA65_RS08710	0.33	+2.2
1,845,102	+				-0.9
1,845,102	+		DZA65_RS08710	0.39	-1.3
1,845,102	+		DZA65_RS08710	0.39	-1.4
1,845,103	-		DZA65_RS08710	0.39	-1.9
1,845,104	+		DZA65_RS08710	0.39	+2.7
1,845,104	+		DZA65_RS08710	0.39	+3.5
1,845,104	+		DZA65_RS08710	0.39	-1.9
1,845,104	+		DZA65_RS08710	0.39	+1.9
1,845,104	+		DZA65_RS08710	0.39	+0.7
1,845,105	-		DZA65_RS08710	0.39	+0.7
1,845,105	-		DZA65_RS08710	0.39	-3.0
1,845,105	-		DZA65_RS08710	0.39	+0.1
1,845,105	-		DZA65_RS08710	0.39	-0.1
1,845,235	-		DZA65_RS08710	0.55	-0.3
1,845,354	+		DZA65_RS08710	0.70	-1.3
1,845,354	+		DZA65_RS08710	0.70	+0.7
1,845,453	+		DZA65_RS08710	0.82	+0.2
1,845,453	+		DZA65_RS08710	0.82	+1.5
1,845,453	+		DZA65_RS08710	0.82	+0.5
1,845,453	+		DZA65_RS08710	0.82	+1.3
1,845,453	+		DZA65_RS08710	0.82	+0.7
1,845,453	+		DZA65_RS08710	0.82	+0.2
1,845,454	-		DZA65_RS08710	0.82	+0.9
1,845,454	-		DZA65_RS08710	0.82	-0.5
1,845,454	-		DZA65_RS08710	0.82	+1.2
1,845,532	-				-0.6
1,845,532	-				+0.9
1,845,532	-				-0.9
1,845,532	-				-2.6
1,845,533	+				-2.8
1,845,533	+				+0.1
1,845,534	-				+0.8
1,845,534	-				-1.3
1,845,534	-				+2.8
1,845,534	-				+0.1
1,845,534	-				+0.4
1,845,565	+				-2.8
1,845,565	+				-0.3
1,845,566	-				-0.9
1,845,566	-				-1.9
1,845,566	-				-1.6
1,845,597	+				+1.5
1,845,597	+				-2.1
1,845,598	-				-2.9
1,845,598	-				-0.9
1,845,598	-				+1.6
1,845,598	-				+0.1
1,845,637	-				+2.3
1,845,686	-		DZA65_RS08715	0.11	-1.9
1,845,686	-		DZA65_RS08715	0.11	-1.1
1,845,759	-		DZA65_RS08715	0.20	+2.6
1,845,808	+		DZA65_RS08715	0.27	+2.3
1,845,808	+		DZA65_RS08715	0.27	-0.9
1,845,808	+		DZA65_RS08715	0.27	+1.8
1,845,809	-		DZA65_RS08715	0.27	+1.6
1,845,809	-		DZA65_RS08715	0.27	+1.7
1,845,809	-		DZA65_RS08715	0.27	-0.3
1,845,809	-		DZA65_RS08715	0.27	-1.6
1,845,811	+		DZA65_RS08715	0.27	+0.2
1,845,811	+		DZA65_RS08715	0.27	-2.3
1,845,811	+		DZA65_RS08715	0.27	-1.6
1,845,811	+		DZA65_RS08715	0.27	+2.9
1,845,811	+		DZA65_RS08715	0.27	+1.8
1,845,811	+		DZA65_RS08715	0.27	-3.2
1,845,811	+		DZA65_RS08715	0.27	-1.6
1,845,811	+		DZA65_RS08715	0.27	+0.5
1,845,811	+		DZA65_RS08715	0.27	-0.5
1,845,811	+		DZA65_RS08715	0.27	-0.9
1,845,811	+		DZA65_RS08715	0.27	+0.6
1,845,812	-		DZA65_RS08715	0.27	-0.9
1,845,812	-		DZA65_RS08715	0.27	-2.1
1,845,812	-		DZA65_RS08715	0.27	+1.2
1,845,845	+		DZA65_RS08715	0.31	-1.3
1,845,845	+		DZA65_RS08715	0.31	-1.6
1,845,845	+		DZA65_RS08715	0.31	-1.6
1,845,845	+		DZA65_RS08715	0.31	+1.1
1,845,869	-		DZA65_RS08715	0.35	-0.9
1,845,879	+		DZA65_RS08715	0.36	-2.3
1,845,879	+		DZA65_RS08715	0.36	+0.6
1,845,879	+		DZA65_RS08715	0.36	+0.7
1,845,879	+		DZA65_RS08715	0.36	-0.3
1,845,880	-		DZA65_RS08715	0.36	-1.6
1,845,880	-		DZA65_RS08715	0.36	-0.9
1,845,880	-		DZA65_RS08715	0.36	+1.3
1,845,880	-		DZA65_RS08715	0.36	+0.7
1,845,880	-		DZA65_RS08715	0.36	-0.6
1,845,881	+		DZA65_RS08715	0.36	+0.7
1,845,881	+		DZA65_RS08715	0.36	+0.6
1,845,881	+		DZA65_RS08715	0.36	+1.3
1,845,882	-		DZA65_RS08715	0.36	+2.0
1,845,882	-		DZA65_RS08715	0.36	-0.2
1,845,882	-		DZA65_RS08715	0.36	-1.5
1,845,882	-		DZA65_RS08715	0.36	+0.9
1,845,882	-		DZA65_RS08715	0.36	+0.2
1,845,913	-		DZA65_RS08715	0.40	-0.5
1,845,989	-		DZA65_RS08715	0.50	-1.6
1,845,989	-		DZA65_RS08715	0.50	+0.1
1,846,019	-		DZA65_RS08715	0.54	-1.6
1,846,030	-		DZA65_RS08715	0.56	-1.9
1,846,106	+		DZA65_RS08715	0.66	+0.7
1,846,106	+		DZA65_RS08715	0.66	+0.7
1,846,107	-		DZA65_RS08715	0.66	-0.3
1,846,107	-		DZA65_RS08715	0.66	-0.7
1,846,121	+		DZA65_RS08715	0.68	+0.8
1,846,121	+		DZA65_RS08715	0.68	-2.8
1,846,121	+		DZA65_RS08715	0.68	+1.8
1,846,190	+		DZA65_RS08715	0.77	+0.1
1,846,190	+		DZA65_RS08715	0.77	-3.2
1,846,209	-		DZA65_RS08715	0.79	-2.0
1,846,209	-		DZA65_RS08715	0.79	+1.5
1,846,211	+		DZA65_RS08715	0.80	+0.7
1,846,211	+		DZA65_RS08715	0.80	+2.7
1,846,211	+		DZA65_RS08715	0.80	-2.3
1,846,212	-		DZA65_RS08715	0.80	-1.7
1,846,212	-		DZA65_RS08715	0.80	+0.7
1,846,220	+		DZA65_RS08715	0.81	+0.9
1,846,220	+		DZA65_RS08715	0.81	+1.6
1,846,221	-		DZA65_RS08715	0.81	-0.9
1,846,221	-		DZA65_RS08715	0.81	-0.2
1,846,221	-		DZA65_RS08715	0.81	+2.3
1,846,221	-		DZA65_RS08715	0.81	-2.3
1,846,247	+		DZA65_RS08715	0.84	-1.3
1,846,247	+		DZA65_RS08715	0.84	-1.1
1,846,248	-		DZA65_RS08715	0.85	+2.4
1,846,248	-		DZA65_RS08715	0.85	-2.3
1,846,323	+				-1.1
1,846,324	-				+0.1
1,846,378	+				-1.3
1,846,378	+				-1.6
1,846,378	+				-2.1
1,846,379	-				+0.4
1,846,437	+				+0.3
1,846,437	+				-2.1
1,846,515	+				+1.8
1,846,515	+				-1.2
1,846,516	-				+2.9
1,846,516	-				-1.6
1,846,516	-				-2.3
1,846,519	+				+1.4
1,846,682	+		DZA65_RS08720	0.18	-2.5
1,846,682	+		DZA65_RS08720	0.18	-1.6
1,846,683	-		DZA65_RS08720	0.19	-1.6
1,846,733	-		DZA65_RS08720	0.29	-1.6
1,846,736	+		DZA65_RS08720	0.30	+2.3
1,846,736	+		DZA65_RS08720	0.30	+1.3
1,846,736	+		DZA65_RS08720	0.30	+0.4
1,846,736	+		DZA65_RS08720	0.30	+0.5
1,846,736	+		DZA65_RS08720	0.30	+0.4
1,846,736	+		DZA65_RS08720	0.30	-3.3
1,846,737	-		DZA65_RS08720	0.30	-0.3
1,846,737	-		DZA65_RS08720	0.30	-0.4
1,846,737	-		DZA65_RS08720	0.30	-2.3
1,846,737	-		DZA65_RS08720	0.30	-3.9
1,846,737	-		DZA65_RS08720	0.30	-1.6
1,846,738	+		DZA65_RS08720	0.30	+1.9
1,847,028	+				-1.3
1,847,029	-				-2.0
1,847,029	-				-1.3
1,847,037	-				-0.3
1,847,037	-				-2.9
1,847,054	-				+1.0
1,847,056	+				-2.1
1,847,057	-				-0.9
1,847,059	+				+0.3
1,847,060	-				+1.8
1,847,060	-				-0.9
1,847,063	+				+0.4
1,847,063	+				+0.3
1,847,063	+				-0.9
1,847,063	+				-0.9
1,847,063	+				+0.9
1,847,064	-				+2.5
1,847,064	-				+1.4
1,847,064	-				-0.3
1,847,064	-				-1.9
1,847,064	-				-1.6
1,847,130	+				-1.0
1,847,130	+				+0.1
1,847,130	+				+1.5
1,847,131	-				-0.3
1,847,131	-				+0.7
1,847,184	+				-1.4
1,847,184	+				-1.0
1,847,184	+				+1.7
1,847,184	+				+0.5
1,847,185	-				+0.0
1,847,188	-				+0.7
1,847,196	+				-2.1
1,847,197	-		DZA65_RS08725	0.10	+0.7
1,847,217	-		DZA65_RS08725	0.12	+1.8
1,847,230	-		DZA65_RS08725	0.13	-3.2
1,847,307	+		DZA65_RS08725	0.19	-0.3
1,847,307	+		DZA65_RS08725	0.19	-0.9
1,847,307	+		DZA65_RS08725	0.19	-0.0
1,847,307	+		DZA65_RS08725	0.19	-1.3
1,847,307	+		DZA65_RS08725	0.19	-0.9
1,847,307	+		DZA65_RS08725	0.19	-3.2
1,847,308	-		DZA65_RS08725	0.19	-1.9
1,847,308	-		DZA65_RS08725	0.19	+3.1
1,847,308	-		DZA65_RS08725	0.19	+1.8
1,847,308	-		DZA65_RS08725	0.19	-1.8
1,847,311	+		DZA65_RS08725	0.20	-1.6
1,847,311	+				+1.7
1,847,311	+		DZA65_RS08725	0.20	-2.1
1,847,312	-		DZA65_RS08725	0.20	-2.1
1,847,312	-		DZA65_RS08725	0.20	-1.8