Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08630

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,826,577	+		DZA65_RS08625	0.51	+1.4
1,826,577	+		DZA65_RS08625	0.51	+1.3
1,826,578	-		DZA65_RS08625	0.51	-0.9
1,826,596	+		DZA65_RS08625	0.52	+0.3
1,826,596	+		DZA65_RS08625	0.52	+2.4
1,826,596	+		DZA65_RS08625	0.52	+2.8
1,826,596	+		DZA65_RS08625	0.52	-2.6
1,826,679	+		DZA65_RS08625	0.58	+0.1
1,826,679	+		DZA65_RS08625	0.58	+3.4
1,826,679	+		DZA65_RS08625	0.58	+0.1
1,826,679	+		DZA65_RS08625	0.58	-1.9
1,826,680	-		DZA65_RS08625	0.58	+1.5
1,826,700	+		DZA65_RS08625	0.59	+2.8
1,826,701	-		DZA65_RS08625	0.59	+0.4
1,826,701	-		DZA65_RS08625	0.59	+2.3
1,826,701	-		DZA65_RS08625	0.59	-0.9
1,826,701	-		DZA65_RS08625	0.59	+0.7
1,826,817	+		DZA65_RS08625	0.66	-0.9
1,826,887	+		DZA65_RS08625	0.71	-2.5
1,826,887	+		DZA65_RS08625	0.71	+0.7
1,826,887	+		DZA65_RS08625	0.71	-0.3
1,826,887	+		DZA65_RS08625	0.71	-1.3
1,826,943	+		DZA65_RS08625	0.75	-1.6
1,826,943	+		DZA65_RS08625	0.75	-1.3
1,826,943	+		DZA65_RS08625	0.75	-1.3
1,826,944	-		DZA65_RS08625	0.75	+3.7
1,826,944	-		DZA65_RS08625	0.75	+2.8
1,826,972	-		DZA65_RS08625	0.76	-1.3
1,826,972	-		DZA65_RS08625	0.76	-0.9
1,826,983	+		DZA65_RS08625	0.77	+0.5
1,826,983	+		DZA65_RS08625	0.77	+1.8
1,826,984	-		DZA65_RS08625	0.77	-0.4
1,826,984	-		DZA65_RS08625	0.77	+2.6
1,826,984	-		DZA65_RS08625	0.77	+0.7
1,826,984	-		DZA65_RS08625	0.77	-3.1
1,827,062	+		DZA65_RS08625	0.82	+0.7
1,827,063	-		DZA65_RS08625	0.82	+0.1
1,827,063	-		DZA65_RS08625	0.82	+1.1
1,827,158	+		DZA65_RS08625	0.88	+0.3
1,827,158	+		DZA65_RS08625	0.88	-0.3
1,827,229	+				+1.9
1,827,229	+				+0.7
1,827,229	+				+1.4
1,827,230	-				-3.0
1,827,259	-				+2.2
1,827,295	+				+1.2
1,827,296	-				-0.9
1,827,296	-				-0.4
1,827,322	+				+0.6
1,827,322	+				-2.7
1,827,337	+				-2.3
1,827,338	-				+2.3
1,827,338	-				+2.3
1,827,338	-				-0.5
1,827,338	-				+0.1
1,827,338	-				-1.9
1,827,386	+				+1.0
1,827,387	-				-2.5
1,827,395	-				+0.5
1,827,420	-				-2.8
1,827,420	-				+3.4
1,827,420	-				-2.6
1,827,631	+				+1.7
1,827,631	+				-1.6
1,827,631	+				+0.1
1,827,811	+		DZA65_RS08630	0.30	+4.3
1,827,811	+		DZA65_RS08630	0.30	+2.2
1,827,811	+		DZA65_RS08630	0.30	+1.0
1,827,811	+		DZA65_RS08630	0.30	+1.9
1,827,811	+		DZA65_RS08630	0.30	-1.3
1,827,811	+		DZA65_RS08630	0.30	-0.9
1,827,812	-		DZA65_RS08630	0.30	+0.1
1,827,812	-		DZA65_RS08630	0.30	-1.6
1,827,812	-		DZA65_RS08630	0.30	+0.9
1,827,812	-		DZA65_RS08630	0.30	+0.5
1,827,812	-		DZA65_RS08630	0.30	-1.6
1,827,812	-		DZA65_RS08630	0.30	-0.9
1,827,812	-		DZA65_RS08630	0.30	-0.6
1,827,812	-		DZA65_RS08630	0.30	-0.7
1,827,812	-		DZA65_RS08630	0.30	+1.7
1,827,812	-		DZA65_RS08630	0.30	-0.5
1,827,812	-		DZA65_RS08630	0.30	-3.0
1,827,812	-		DZA65_RS08630	0.30	-0.6
1,827,812	-		DZA65_RS08630	0.30	-0.5
1,827,836	+		DZA65_RS08630	0.33	+0.0
1,828,003	+		DZA65_RS08630	0.52	+0.1
1,828,003	+		DZA65_RS08630	0.52	+0.6
1,828,003	+		DZA65_RS08630	0.52	+0.5
1,828,003	+		DZA65_RS08630	0.52	+2.3
1,828,004	-		DZA65_RS08630	0.53	+1.1
1,828,004	-		DZA65_RS08630	0.53	-1.1
1,828,063	+		DZA65_RS08630	0.60	-0.3
1,828,215	+		DZA65_RS08630	0.78	-0.3
1,828,237	-		DZA65_RS08630	0.80	+0.7
1,828,242	-		DZA65_RS08630	0.81	-0.6
1,828,309	+		DZA65_RS08630	0.89	-1.6
1,828,309	+		DZA65_RS08630	0.89	+0.1
1,828,310	-		DZA65_RS08630	0.89	+0.1
1,828,310	-		DZA65_RS08630	0.89	-0.9
1,828,310	-		DZA65_RS08630	0.89	+1.0
1,828,310	-		DZA65_RS08630	0.89	+0.0
1,828,310	-		DZA65_RS08630	0.89	-0.9
1,828,402	+				-0.5
1,828,410	-				-0.6
1,828,442	-				-2.9
1,828,473	+				-2.2
1,828,504	-				-1.9
1,828,509	+				+0.7
1,828,509	+				-2.9
1,828,509	+				+3.3
1,828,509	+				-1.6
1,828,509	+				+1.0
1,828,510	-				-0.3
1,828,510	-				+0.0
1,828,510	-				-0.2
1,828,510	-				-0.7
1,828,515	+				-0.4
1,828,515	+				+0.6
1,828,515	+				-1.9
1,828,515	+				+0.7
1,828,515	+				-3.4
1,828,515	+				-0.0
1,828,515	+				+0.2
1,828,515	+				+1.0
1,828,515	+				-1.3
1,828,515	+				+2.6
1,828,515	+				+0.2
1,828,515	+				-0.3
1,828,516	-				+0.4
1,828,516	-				-0.9
1,828,516	-				-0.7
1,828,516	-				-1.6
1,828,516	-				-1.6
1,828,602	+				+2.5
1,828,602	+				-0.3
1,828,603	-				+2.3
1,828,603	-				-1.1
1,828,603	-				-1.6
1,828,608	-				-0.8
1,828,608	-				-1.9
1,828,749	+		DZA65_RS08635	0.21	-1.6
1,828,801	+		DZA65_RS08635	0.26	+0.7
1,828,801	+				+2.8
1,828,918	+		DZA65_RS08635	0.36	-2.0
1,828,919	-		DZA65_RS08635	0.36	-1.0
1,828,919	-		DZA65_RS08635	0.36	+2.9
1,828,919	-		DZA65_RS08635	0.36	+0.9
1,828,927	+		DZA65_RS08635	0.37	-2.6
1,828,927	+		DZA65_RS08635	0.37	-0.1
1,828,927	+		DZA65_RS08635	0.37	-1.6
1,828,928	-		DZA65_RS08635	0.37	-3.2
1,828,955	+		DZA65_RS08635	0.40	+0.0
1,828,955	+		DZA65_RS08635	0.40	-1.9
1,828,955	+		DZA65_RS08635	0.40	-2.3
1,828,955	+		DZA65_RS08635	0.40	-0.0
1,829,020	+		DZA65_RS08635	0.45	+0.1
1,829,042	-		DZA65_RS08635	0.47	+0.5
1,829,113	+		DZA65_RS08635	0.54	-2.1
1,829,221	+		DZA65_RS08635	0.63	-1.9
1,829,222	-		DZA65_RS08635	0.63	-2.4
1,829,222	-		DZA65_RS08635	0.63	-1.6
1,829,222	-		DZA65_RS08635	0.63	+1.6
1,829,222	-		DZA65_RS08635	0.63	-2.9
1,829,222	-		DZA65_RS08635	0.63	-3.0
1,829,351	-		DZA65_RS08635	0.75	-0.3
1,829,351	-		DZA65_RS08635	0.75	-3.0
1,829,352	+		DZA65_RS08635	0.75	-1.3
1,829,353	-		DZA65_RS08635	0.75	-1.3
1,829,353	-		DZA65_RS08635	0.75	-2.1
1,829,353	-		DZA65_RS08635	0.75	-2.3
1,829,358	+		DZA65_RS08635	0.76	+1.1