Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07690 and DZA65_RS07695 are separated by 113 nucleotides DZA65_RS07695 and DZA65_RS07700 are separated by 14 nucleotides DZA65_RS07700 and DZA65_RS07705 are separated by 11 nucleotides
DZA65_RS07690: DZA65_RS07690 - Hcp family type VI secretion system effector, at 1,598,387 to 1,598,905
_RS07690
DZA65_RS07695: DZA65_RS07695 - type VI secretion system tip protein VgrG, at 1,599,019 to 1,600,872
_RS07695
DZA65_RS07700: DZA65_RS07700 - DUF1795 domain-containing protein, at 1,600,887 to 1,601,294
_RS07700
DZA65_RS07705: DZA65_RS07705 - type IV secretion protein Rhs, at 1,601,306 to 1,605,265
_RS07705
Position (kb) 1599
1600
1601 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1598.142 kb on - strand at 1598.200 kb on + strand at 1598.387 kb on - strand at 1598.387 kb on - strand at 1598.402 kb on + strand at 1598.402 kb on + strand at 1598.403 kb on - strand at 1598.477 kb on + strand, within DZA65_RS07690 at 1598.477 kb on + strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.633 kb on - strand, within DZA65_RS07690 at 1598.903 kb on + strand at 1598.903 kb on + strand at 1598.903 kb on + strand at 1598.904 kb on - strand at 1599.211 kb on + strand, within DZA65_RS07695 at 1599.455 kb on - strand, within DZA65_RS07695 at 1599.455 kb on - strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.524 kb on - strand, within DZA65_RS07695 at 1599.524 kb on - strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.704 kb on - strand, within DZA65_RS07695 at 1599.724 kb on + strand, within DZA65_RS07695 at 1600.044 kb on - strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.171 kb on - strand, within DZA65_RS07695 at 1600.542 kb on + strand, within DZA65_RS07695 at 1600.695 kb on + strand at 1600.695 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.136 kb on - strand, within DZA65_RS07700 at 1601.211 kb on - strand, within DZA65_RS07700 at 1601.318 kb on - strand at 1601.458 kb on + strand at 1601.459 kb on - strand at 1601.589 kb on + strand at 1601.589 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.638 kb on - strand at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 1,598,142 - -1.3 1,598,200 + +1.4 1,598,387 - -0.6 1,598,387 - +1.1 1,598,402 + -2.6 1,598,402 + +0.7 1,598,403 - -2.5 1,598,477 + DZA65_RS07690 0.17 +1.8 1,598,477 + DZA65_RS07690 0.17 -0.9 1,598,631 - DZA65_RS07690 0.47 -1.6 1,598,631 - DZA65_RS07690 0.47 -1.6 1,598,631 - DZA65_RS07690 0.47 -1.3 1,598,631 - DZA65_RS07690 0.47 +0.3 1,598,633 - DZA65_RS07690 0.47 -2.8 1,598,903 + +1.1 1,598,903 + -1.6 1,598,903 + +0.1 1,598,904 - -1.3 1,599,211 + DZA65_RS07695 0.10 -1.3 1,599,455 - DZA65_RS07695 0.24 +1.3 1,599,455 - DZA65_RS07695 0.24 +2.1 1,599,523 + DZA65_RS07695 0.27 +0.3 1,599,523 + DZA65_RS07695 0.27 -1.6 1,599,523 + DZA65_RS07695 0.27 +0.7 1,599,524 - DZA65_RS07695 0.27 +0.7 1,599,524 - DZA65_RS07695 0.27 +0.5 1,599,643 + DZA65_RS07695 0.34 +0.7 1,599,643 + DZA65_RS07695 0.34 +1.8 1,599,643 + DZA65_RS07695 0.34 -3.8 1,599,643 + DZA65_RS07695 0.34 -0.8 1,599,643 + DZA65_RS07695 0.34 -0.3 1,599,643 + DZA65_RS07695 0.34 +0.7 1,599,643 + DZA65_RS07695 0.34 +2.2 1,599,643 + DZA65_RS07695 0.34 +1.2 1,599,643 + +2.0 1,599,643 + DZA65_RS07695 0.34 -1.6 1,599,643 + DZA65_RS07695 0.34 +2.1 1,599,643 + DZA65_RS07695 0.34 -0.9 1,599,644 - DZA65_RS07695 0.34 +0.6 1,599,644 - DZA65_RS07695 0.34 +2.3 1,599,644 - DZA65_RS07695 0.34 -2.1 1,599,644 - DZA65_RS07695 0.34 -0.3 1,599,644 - DZA65_RS07695 0.34 +0.7 1,599,644 - DZA65_RS07695 0.34 +0.5 1,599,644 - DZA65_RS07695 0.34 -2.5 1,599,704 - DZA65_RS07695 0.37 +0.4 1,599,724 + DZA65_RS07695 0.38 -0.5 1,600,044 - DZA65_RS07695 0.55 +1.1 1,600,099 + DZA65_RS07695 0.58 +0.3 1,600,099 + DZA65_RS07695 0.58 +0.0 1,600,100 - DZA65_RS07695 0.58 -2.1 1,600,100 - DZA65_RS07695 0.58 -2.3 1,600,162 + DZA65_RS07695 0.62 +3.0 1,600,162 + DZA65_RS07695 0.62 -2.2 1,600,162 + DZA65_RS07695 0.62 -1.3 1,600,163 - DZA65_RS07695 0.62 +0.9 1,600,163 - DZA65_RS07695 0.62 +1.6 1,600,171 - DZA65_RS07695 0.62 -0.3 1,600,542 + DZA65_RS07695 0.82 +0.3 1,600,695 + -0.2 1,600,695 + -2.8 1,600,886 + +2.3 1,600,886 + +0.1 1,600,886 + -1.0 1,600,886 + +0.7 1,600,886 + -1.6 1,600,886 + -2.3 1,600,886 + +0.1 1,600,886 + -1.6 1,600,886 + -0.1 1,600,886 + -0.9 1,600,886 + +0.7 1,600,886 + -0.3 1,600,886 + +1.0 1,600,886 + -1.3 1,600,886 + +0.2 1,600,886 + -1.3 1,600,886 + -0.1 1,600,886 + -0.2 1,600,886 + -1.3 1,600,886 + +0.5 1,600,886 + +0.5 1,600,886 + +0.6 1,600,887 - -0.7 1,600,887 - -1.6 1,600,887 - +1.3 1,600,887 - +0.7 1,600,887 - +1.8 1,600,887 - -0.3 1,600,887 - -1.9 1,600,887 - -1.9 1,600,887 - -2.8 1,600,887 - -1.6 1,600,887 - +1.2 1,600,887 - -1.9 1,600,887 - +1.8 1,600,887 - -2.6 1,600,887 - -1.5 1,600,887 - +0.7 1,600,887 - +1.4 1,600,887 - +0.4 1,600,887 - +1.3 1,600,887 - +0.9 1,600,887 - +3.4 1,600,887 - -2.3 1,600,887 - -0.9 1,600,887 - +1.9 1,600,887 - +1.7 1,600,887 - +4.6 1,600,887 - -0.6 1,600,887 - -0.3 1,600,887 - +0.7 1,600,887 - -0.9 1,600,887 - -1.3 1,600,887 - -1.1 1,600,887 - +1.3 1,600,890 + -1.1 1,600,890 + +1.5 1,600,890 + -0.6 1,600,890 + +0.9 1,600,891 - +2.0 1,600,891 - -1.6 1,600,891 - +1.6 1,601,031 + DZA65_RS07700 0.35 -0.9 1,601,031 + DZA65_RS07700 0.35 -2.1 1,601,031 + DZA65_RS07700 0.35 +0.1 1,601,133 + DZA65_RS07700 0.60 -0.9 1,601,133 + DZA65_RS07700 0.60 -2.3 1,601,133 + DZA65_RS07700 0.60 +0.9 1,601,134 - DZA65_RS07700 0.61 +1.6 1,601,134 - DZA65_RS07700 0.61 +1.7 1,601,134 - DZA65_RS07700 0.61 +0.7 1,601,134 - DZA65_RS07700 0.61 +0.7 1,601,134 - DZA65_RS07700 0.61 +1.3 1,601,134 - DZA65_RS07700 0.61 +0.1 1,601,135 + DZA65_RS07700 0.61 -0.3 1,601,135 + DZA65_RS07700 0.61 -1.3 1,601,135 + DZA65_RS07700 0.61 -0.3 1,601,136 - DZA65_RS07700 0.61 -1.1 1,601,211 - DZA65_RS07700 0.79 -1.6 1,601,318 - -0.3 1,601,458 + -0.5 1,601,459 - -1.6 1,601,589 + -1.3 1,601,589 + +1.7 1,601,637 + -0.3 1,601,637 + +0.1 1,601,637 + +1.6 1,601,637 + -1.9 1,601,638 - +0.1 1,601,761 + DZA65_RS07705 0.11 +1.5 1,601,761 + DZA65_RS07705 0.11 -0.3 1,601,857 + DZA65_RS07705 0.14 -2.6 1,601,857 + DZA65_RS07705 0.14 -1.9
Or see this region's nucleotide sequence