Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06050

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,249,048	-		DZA65_RS06045	0.24	-1.6
1,249,069	+		DZA65_RS06045	0.26	+2.8
1,249,069	+		DZA65_RS06045	0.26	-0.6
1,249,167	+		DZA65_RS06045	0.35	-1.8
1,249,167	+		DZA65_RS06045	0.35	-2.2
1,249,167	+		DZA65_RS06045	0.35	+0.4
1,249,184	+		DZA65_RS06045	0.37	-1.0
1,249,193	+		DZA65_RS06045	0.37	-0.3
1,249,193	+		DZA65_RS06045	0.37	-1.4
1,249,194	-		DZA65_RS06045	0.38	-2.4
1,249,194	-		DZA65_RS06045	0.38	-0.0
1,249,194	-		DZA65_RS06045	0.38	-0.0
1,249,194	-		DZA65_RS06045	0.38	-2.0
1,249,194	-		DZA65_RS06045	0.38	-1.8
1,249,247	+		DZA65_RS06045	0.43	+1.3
1,249,256	+		DZA65_RS06045	0.43	+0.2
1,249,256	+		DZA65_RS06045	0.43	-1.6
1,249,257	-		DZA65_RS06045	0.43	-0.6
1,249,307	+		DZA65_RS06045	0.48	-1.4
1,249,307	+		DZA65_RS06045	0.48	-0.3
1,249,307	+		DZA65_RS06045	0.48	+0.3
1,249,308	-		DZA65_RS06045	0.48	-2.1
1,249,308	-		DZA65_RS06045	0.48	+2.8
1,249,346	+		DZA65_RS06045	0.52	+1.1
1,249,346	+		DZA65_RS06045	0.52	-0.6
1,249,346	+		DZA65_RS06045	0.52	-1.4
1,249,368	+		DZA65_RS06045	0.54	+1.4
1,249,369	-		DZA65_RS06045	0.54	+0.4
1,249,400	+		DZA65_RS06045	0.57	-1.4
1,249,400	+		DZA65_RS06045	0.57	+0.5
1,249,401	-		DZA65_RS06045	0.57	+1.0
1,249,401	-		DZA65_RS06045	0.57	-1.6
1,249,418	+		DZA65_RS06045	0.59	+2.3
1,249,418	+		DZA65_RS06045	0.59	+3.0
1,249,418	+		DZA65_RS06045	0.59	-0.7
1,249,418	+				-1.0
1,249,418	+		DZA65_RS06045	0.59	-0.6
1,249,418	+		DZA65_RS06045	0.59	+1.7
1,249,418	+		DZA65_RS06045	0.59	+1.0
1,249,418	+		DZA65_RS06045	0.59	-0.0
1,249,418	+		DZA65_RS06045	0.59	-0.2
1,249,419	-		DZA65_RS06045	0.59	-1.2
1,249,419	-		DZA65_RS06045	0.59	-0.0
1,249,419	-		DZA65_RS06045	0.59	-2.0
1,249,419	-		DZA65_RS06045	0.59	+1.3
1,249,419	-		DZA65_RS06045	0.59	+0.3
1,249,419	-		DZA65_RS06045	0.59	-1.0
1,249,460	+		DZA65_RS06045	0.63	+3.5
1,249,460	+		DZA65_RS06045	0.63	-1.0
1,249,460	+		DZA65_RS06045	0.63	+1.1
1,249,460	+		DZA65_RS06045	0.63	-1.8
1,249,460	+		DZA65_RS06045	0.63	-0.9
1,249,460	+		DZA65_RS06045	0.63	-0.6
1,249,460	+		DZA65_RS06045	0.63	-0.0
1,249,461	-		DZA65_RS06045	0.63	+0.7
1,249,461	-		DZA65_RS06045	0.63	-0.2
1,249,461	-		DZA65_RS06045	0.63	+0.5
1,249,461	-		DZA65_RS06045	0.63	+1.5
1,249,461	-		DZA65_RS06045	0.63	+1.7
1,249,461	-		DZA65_RS06045	0.63	+0.4
1,249,461	-		DZA65_RS06045	0.63	-1.8
1,249,503	-		DZA65_RS06045	0.67	-0.4
1,249,503	-		DZA65_RS06045	0.67	-1.7
1,249,503	-		DZA65_RS06045	0.67	+1.4
1,249,536	+		DZA65_RS06045	0.70	+0.1
1,249,536	+		DZA65_RS06045	0.70	+0.3
1,249,536	+		DZA65_RS06045	0.70	-2.5
1,249,558	-		DZA65_RS06045	0.72	-0.4
1,249,558	-		DZA65_RS06045	0.72	+1.5
1,249,605	+		DZA65_RS06045	0.77	-0.4
1,249,668	-		DZA65_RS06045	0.83	+1.1
1,249,742	+		DZA65_RS06045	0.90	-0.6
1,249,742	+		DZA65_RS06045	0.90	-0.2
1,249,743	-		DZA65_RS06045	0.90	+1.4
1,249,754	+				+2.3
1,249,835	-				+1.0
1,249,871	+				-2.4
1,249,871	+				-0.2
1,249,871	+				-0.2
1,249,871	+				+0.6
1,249,871	+				+1.5
1,249,872	-				+1.5
1,249,878	+				+1.0
1,249,878	+				-0.6
1,249,878	+				+3.2
1,249,878	+				+1.5
1,249,878	+				-2.0
1,249,878	+				+0.6
1,249,878	+				-0.4
1,249,878	+				+1.8
1,249,879	-				-0.9
1,249,879	-				-2.8
1,249,879	-				-1.0
1,249,879	-				-1.0
1,249,879	-				+1.3
1,249,943	-				-0.6
1,249,943	-				-1.8
1,249,943	-				-0.0
1,250,049	+				+2.9
1,250,049	+				+0.4
1,250,049	+				+1.0
1,250,050	-				+0.8
1,250,050	-				+1.3
1,250,050	-				-2.7
1,250,050	-				+0.8
1,250,079	+		DZA65_RS06050	0.11	+0.6
1,250,167	+		DZA65_RS06050	0.30	-1.0
1,250,168	-		DZA65_RS06050	0.30	-0.6
1,250,168	-		DZA65_RS06050	0.30	-0.0
1,250,318	-		DZA65_RS06050	0.63	-0.2
1,250,318	-		DZA65_RS06050	0.63	+0.6
1,250,335	+		DZA65_RS06050	0.66	+1.0
1,250,335	+		DZA65_RS06050	0.66	+0.7
1,250,336	-		DZA65_RS06050	0.66	+3.5
1,250,336	-		DZA65_RS06050	0.66	-0.6
1,250,336	-		DZA65_RS06050	0.66	+0.0
1,250,336	-		DZA65_RS06050	0.66	-0.0
1,250,336	-		DZA65_RS06050	0.66	+0.5
1,250,341	+		DZA65_RS06050	0.68	-0.4
1,250,341	+		DZA65_RS06050	0.68	-0.4
1,250,342	-		DZA65_RS06050	0.68	+1.1
1,250,342	-		DZA65_RS06050	0.68	-0.6
1,250,342	-		DZA65_RS06050	0.68	+2.2
1,250,342	-		DZA65_RS06050	0.68	-0.6
1,250,345	+		DZA65_RS06050	0.68	+1.0
1,250,345	+		DZA65_RS06050	0.68	-1.6
1,250,345	+		DZA65_RS06050	0.68	-1.6
1,250,346	-		DZA65_RS06050	0.69	-2.0
1,250,346	-		DZA65_RS06050	0.69	+3.3
1,250,346	-		DZA65_RS06050	0.69	+1.3
1,250,367	+		DZA65_RS06050	0.73	+2.3
1,250,377	+		DZA65_RS06050	0.75	-2.6
1,250,378	-		DZA65_RS06050	0.76	-3.4
1,250,430	+		DZA65_RS06050	0.87	-0.6
1,250,430	+		DZA65_RS06050	0.87	-0.6
1,250,430	+		DZA65_RS06050	0.87	-1.0
1,250,430	+		DZA65_RS06050	0.87	+0.6
1,250,430	+		DZA65_RS06050	0.87	+0.6
1,250,430	+		DZA65_RS06050	0.87	-0.0
1,250,431	-		DZA65_RS06050	0.87	+0.3
1,250,431	-		DZA65_RS06050	0.87	-1.6
1,250,431	-		DZA65_RS06050	0.87	+0.3
1,250,431	-		DZA65_RS06050	0.87	-0.4
1,250,431	-		DZA65_RS06050	0.87	+1.3
1,250,446	-				-2.0
1,250,480	+				+0.6
1,250,486	+				-1.0
1,250,486	+				-2.7
1,250,504	+				-1.8
1,250,511	+				-1.0
1,250,511	+				-2.0
1,250,512	-				-4.4
1,250,512	-				+2.3
1,250,512	-				+2.0
1,250,512	-				-0.4
1,250,515	+				-3.0
1,250,515	+				+1.1
1,250,515	+				+0.7
1,250,515	+				-1.0
1,250,516	-				+0.2
1,250,516	-				-1.6
1,250,516	-				+2.2
1,250,516	-				-1.0
1,250,516	-				+1.0
1,250,518	-				-1.4
1,250,518	-				+1.6
1,250,520	+				-0.8
1,250,521	-				-0.0
1,250,521	-				-0.6
1,250,521	-				+0.5
1,250,521	-				+2.1
1,250,529	+				+0.3
1,250,540	-				+0.5
1,250,547	+				-1.0
1,250,551	+				+1.0
1,250,551	+				+0.6
1,250,587	+				-2.6
1,250,588	-				+1.2
1,250,595	+				+1.5
1,250,595	+				+1.5
1,250,596	-				-0.3
1,250,596	-				-1.4
1,250,596	-				+1.0
1,250,596	-				+2.0
1,250,734	+				-2.5
1,250,734	+				-1.4
1,250,778	+		DZA65_RS06055	0.12	-1.8
1,250,778	+		DZA65_RS06055	0.12	-0.6
1,250,778	+		DZA65_RS06055	0.12	-0.4
1,250,778	+		DZA65_RS06055	0.12	-3.9
1,250,779	-		DZA65_RS06055	0.12	+3.0
1,250,779	-		DZA65_RS06055	0.12	+1.4
1,250,779	-		DZA65_RS06055	0.12	-0.0
1,250,779	-		DZA65_RS06055	0.12	-2.2
1,250,779	-		DZA65_RS06055	0.12	+0.2
1,250,790	+		DZA65_RS06055	0.13	-1.4
1,250,791	-		DZA65_RS06055	0.13	-1.8
1,250,950	+		DZA65_RS06055	0.22	-1.9
1,250,950	+		DZA65_RS06055	0.22	+2.3
1,250,950	+		DZA65_RS06055	0.22	-0.6
1,250,951	-		DZA65_RS06055	0.22	+0.7
1,250,951	-		DZA65_RS06055	0.22	-1.6
1,250,951	-		DZA65_RS06055	0.22	-1.0
1,250,951	-		DZA65_RS06055	0.22	-2.4
1,250,971	+		DZA65_RS06055	0.23	+0.8
1,251,035	+		DZA65_RS06055	0.26	+1.0
1,251,035	+		DZA65_RS06055	0.26	+0.8
1,251,035	+		DZA65_RS06055	0.26	-1.6
1,251,035	+		DZA65_RS06055	0.26	+3.1
1,251,035	+		DZA65_RS06055	0.26	-0.6
1,251,035	+		DZA65_RS06055	0.26	-1.5
1,251,035	+		DZA65_RS06055	0.26	-2.0
1,251,036	-		DZA65_RS06055	0.26	-2.2
1,251,036	-		DZA65_RS06055	0.26	-0.5
1,251,036	-		DZA65_RS06055	0.26	+0.4
1,251,036	-		DZA65_RS06055	0.26	-2.0
1,251,036	-		DZA65_RS06055	0.26	-0.0
1,251,036	-		DZA65_RS06055	0.26	-2.2
1,251,099	+		DZA65_RS06055	0.30	-1.0
1,251,105	-		DZA65_RS06055	0.30	+1.8
1,251,186	-		DZA65_RS06055	0.35	-1.4
1,251,191	+		DZA65_RS06055	0.35	+0.2
1,251,192	-		DZA65_RS06055	0.35	-1.4
1,251,197	+		DZA65_RS06055	0.36	-1.2
1,251,197	+		DZA65_RS06055	0.36	+2.8
1,251,197	+		DZA65_RS06055	0.36	+1.2
1,251,313	-		DZA65_RS06055	0.42	-1.6
1,251,313	-		DZA65_RS06055	0.42	+2.0
1,251,313	-		DZA65_RS06055	0.42	-1.4
1,251,313	-		DZA65_RS06055	0.42	+1.4
1,251,313	-		DZA65_RS06055	0.42	-0.1
1,251,313	-		DZA65_RS06055	0.42	-0.6
1,251,313	-		DZA65_RS06055	0.42	+2.5
1,251,367	+		DZA65_RS06055	0.45	-1.7
1,251,367	+		DZA65_RS06055	0.45	+1.5
1,251,367	+		DZA65_RS06055	0.45	+0.4
1,251,381	-		DZA65_RS06055	0.46	-2.8
1,251,414	+		DZA65_RS06055	0.48	-1.4
1,251,414	+		DZA65_RS06055	0.48	-1.4
1,251,414	+		DZA65_RS06055	0.48	-0.2
1,251,414	+		DZA65_RS06055	0.48	+0.4
1,251,414	+		DZA65_RS06055	0.48	+1.6
1,251,414	+		DZA65_RS06055	0.48	-2.0
1,251,415	-		DZA65_RS06055	0.48	-1.4
1,251,415	-		DZA65_RS06055	0.48	-1.4
1,251,415	-		DZA65_RS06055	0.48	-1.0
1,251,415	-		DZA65_RS06055	0.48	+1.3
1,251,415	-		DZA65_RS06055	0.48	-0.6
1,251,415	-		DZA65_RS06055	0.48	+1.5
1,251,415	-		DZA65_RS06055	0.48	+2.5
1,251,415	-		DZA65_RS06055	0.48	-1.4
1,251,415	-		DZA65_RS06055	0.48	+0.7
1,251,461	+		DZA65_RS06055	0.51	-1.0
1,251,462	-		DZA65_RS06055	0.51	-0.0
1,251,462	-		DZA65_RS06055	0.51	-2.2
1,251,464	+		DZA65_RS06055	0.51	-1.4
1,251,465	-		DZA65_RS06055	0.51	+2.0
1,251,465	-		DZA65_RS06055	0.51	+0.5
1,251,465	-		DZA65_RS06055	0.51	+2.4