Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05830

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,200,043	+		DZA65_RS05825	0.53	+1.7
1,200,043	+		DZA65_RS05825	0.53	-0.6
1,200,043	+		DZA65_RS05825	0.53	-0.6
1,200,044	-		DZA65_RS05825	0.53	-3.1
1,200,044	-		DZA65_RS05825	0.53	+2.9
1,200,044	-		DZA65_RS05825	0.53	-0.1
1,200,044	-		DZA65_RS05825	0.53	+2.3
1,200,044	-		DZA65_RS05825	0.53	+0.5
1,200,115	+		DZA65_RS05825	0.59	+2.6
1,200,115	+		DZA65_RS05825	0.59	+1.1
1,200,115	+		DZA65_RS05825	0.59	-2.5
1,200,115	+		DZA65_RS05825	0.59	+1.5
1,200,115	+		DZA65_RS05825	0.59	-2.4
1,200,116	-		DZA65_RS05825	0.59	+2.2
1,200,116	-		DZA65_RS05825	0.59	-1.6
1,200,116	-		DZA65_RS05825	0.59	-1.1
1,200,116	-		DZA65_RS05825	0.59	-0.1
1,200,116	-		DZA65_RS05825	0.59	+3.4
1,200,223	+		DZA65_RS05825	0.69	+1.2
1,200,284	-		DZA65_RS05825	0.75	-1.1
1,200,401	+		DZA65_RS05825	0.85	-1.1
1,200,401	+		DZA65_RS05825	0.85	-0.1
1,200,401	+		DZA65_RS05825	0.85	-1.1
1,200,412	-		DZA65_RS05825	0.86	-0.6
1,200,412	-		DZA65_RS05825	0.86	-0.6
1,200,430	+		DZA65_RS05825	0.88	-1.1
1,200,430	+		DZA65_RS05825	0.88	-0.5
1,200,430	+		DZA65_RS05825	0.88	-1.3
1,200,430	+		DZA65_RS05825	0.88	-1.4
1,200,430	+		DZA65_RS05825	0.88	-1.1
1,200,431	-		DZA65_RS05825	0.88	-1.1
1,200,431	-		DZA65_RS05825	0.88	-2.1
1,200,431	-		DZA65_RS05825	0.88	-0.4
1,200,431	-		DZA65_RS05825	0.88	-0.6
1,200,431	-		DZA65_RS05825	0.88	+2.8
1,200,432	+		DZA65_RS05825	0.88	-0.6
1,200,432	+		DZA65_RS05825	0.88	-0.2
1,200,432	+		DZA65_RS05825	0.88	-3.2
1,200,432	+		DZA65_RS05825	0.88	-1.9
1,200,433	-		DZA65_RS05825	0.88	-0.1
1,200,433	-		DZA65_RS05825	0.88	-1.6
1,200,433	-		DZA65_RS05825	0.88	-2.1
1,200,433	-		DZA65_RS05825	0.88	-2.9
1,200,598	+				-0.6
1,200,611	+				-1.9
1,200,633	+				-1.6
1,200,634	-				+0.1
1,200,635	+				-0.7
1,200,635	+				-2.2
1,200,635	+				+0.9
1,200,636	-				-1.4
1,200,636	-				+1.4
1,200,644	-				-1.6
1,200,653	-				-0.4
1,200,656	+				+1.9
1,200,656	+				+1.7
1,200,684	-				+0.9
1,200,707	+				+0.1
1,200,708	-				-0.1
1,200,708	-				-0.6
1,200,708	-				+1.4
1,200,723	+				+0.2
1,200,724	-				-1.2
1,200,724	-				-2.2
1,200,725	+				-0.5
1,200,750	+				+0.9
1,200,772	+				-0.0
1,200,772	+				-2.2
1,200,781	-				-0.1
1,200,781	-				+1.2
1,200,805	-				-1.8
1,200,805	-				+0.6
1,200,814	+				+0.2
1,200,814	+				-1.6
1,200,814	+				+1.0
1,200,815	-				-2.1
1,200,815	-				-0.1
1,200,815	-				-3.0
1,200,815	-				-0.3
1,200,815	-				-0.6
1,200,815	-				-0.4
1,200,815	-				-0.8
1,200,823	-				-2.8
1,200,832	-				+0.8
1,200,858	+				-2.1
1,200,968	+				-1.6
1,200,969	-				-2.4
1,200,969	-				-0.1
1,201,011	-				-0.6
1,201,011	-				-0.7
1,201,031	+				+1.1
1,201,031	+				-0.9
1,201,031	+				-1.1
1,201,031	+				+0.1
1,201,031	+				+0.1
1,201,033	+				+2.1
1,201,033	+				+1.5
1,201,033	+				+1.5
1,201,033	+				-1.4
1,201,033	+				-1.6
1,201,033	+				-0.2
1,201,033	+				+0.9
1,201,033	+				-2.8
1,201,033	+				+1.6
1,201,033	+				+0.5
1,201,033	+				-1.1
1,201,034	-				-0.6
1,201,034	-				-1.6
1,201,034	-				+0.6
1,201,034	-				+2.9
1,201,034	-				-0.1
1,201,034	-				-1.4
1,201,034	-				+0.3
1,201,034	-				-0.6
1,201,034	-				+0.9
1,201,034	-				+0.9
1,201,034	-				-1.1
1,201,034	-				-0.0
1,201,034	-				-1.1
1,201,034	-				-1.1
1,201,034	-				-1.3
1,201,034	-				+1.1
1,201,034	-				-0.6
1,201,034	-				+0.9
1,201,065	+				-0.6
1,201,065	+				-0.5
1,201,065	+				+0.9
1,201,066	-				-1.1
1,201,119	+				-1.4
1,201,119	+				-0.4
1,201,120	-				-1.1
1,201,120	-				+0.7
1,201,120	-				-1.1
1,201,220	+		DZA65_RS05830	0.14	-1.9
1,201,251	+		DZA65_RS05830	0.16	+1.9
1,201,289	+		DZA65_RS05830	0.19	-0.1
1,201,290	-		DZA65_RS05830	0.19	+1.2
1,201,290	-		DZA65_RS05830	0.19	+1.3
1,201,306	+		DZA65_RS05830	0.20	-0.6
1,201,307	-		DZA65_RS05830	0.20	-1.3
1,201,307	-		DZA65_RS05830	0.20	-1.1
1,201,307	-		DZA65_RS05830	0.20	-1.4
1,201,347	+		DZA65_RS05830	0.23	-4.2
1,201,411	+		DZA65_RS05830	0.28	-1.1
1,201,412	-		DZA65_RS05830	0.28	-1.6
1,201,423	+		DZA65_RS05830	0.29	-1.4
1,201,423	+				-1.1
1,201,423	+		DZA65_RS05830	0.29	-1.6
1,201,453	+		DZA65_RS05830	0.31	-0.1
1,201,473	+		DZA65_RS05830	0.33	-0.6
1,201,485	+		DZA65_RS05830	0.34	-1.4
1,201,485	+		DZA65_RS05830	0.34	-0.1
1,201,486	-		DZA65_RS05830	0.34	-2.5
1,201,486	-		DZA65_RS05830	0.34	-2.1
1,201,579	+		DZA65_RS05830	0.41	-0.2
1,201,579	+		DZA65_RS05830	0.41	-1.6
1,201,580	-		DZA65_RS05830	0.41	-2.1
1,201,580	-		DZA65_RS05830	0.41	+3.1
1,201,765	+		DZA65_RS05830	0.55	+0.4
1,201,765	+		DZA65_RS05830	0.55	+0.7
1,201,765	+		DZA65_RS05830	0.55	-1.8
1,201,765	+		DZA65_RS05830	0.55	-1.4
1,201,846	+		DZA65_RS05830	0.61	-2.8
1,201,846	+		DZA65_RS05830	0.61	+1.5
1,201,846	+				-1.6
1,201,846	+		DZA65_RS05830	0.61	-2.1
1,201,847	-		DZA65_RS05830	0.61	-3.1
1,201,847	-		DZA65_RS05830	0.61	+1.0
1,201,847	-		DZA65_RS05830	0.61	-2.4
1,201,847	-		DZA65_RS05830	0.61	-2.2
1,201,847	-		DZA65_RS05830	0.61	-0.6
1,201,855	+		DZA65_RS05830	0.62	+0.0
1,201,855	+		DZA65_RS05830	0.62	-1.4
1,201,855	+		DZA65_RS05830	0.62	+1.7
1,201,855	+		DZA65_RS05830	0.62	-0.1
1,201,855	+		DZA65_RS05830	0.62	-1.2
1,201,855	+		DZA65_RS05830	0.62	-1.1
1,201,855	+		DZA65_RS05830	0.62	-1.9
1,201,855	+		DZA65_RS05830	0.62	-1.6
1,201,856	-				-1.9
1,201,856	-		DZA65_RS05830	0.62	+0.9
1,201,856	-		DZA65_RS05830	0.62	+0.7
1,201,856	-		DZA65_RS05830	0.62	-0.9
1,201,856	-		DZA65_RS05830	0.62	-1.5
1,201,879	-		DZA65_RS05830	0.64	-2.6
1,201,879	-		DZA65_RS05830	0.64	-1.6
1,201,879	-		DZA65_RS05830	0.64	-1.1
1,201,964	-		DZA65_RS05830	0.70	+1.3
1,201,964	-		DZA65_RS05830	0.70	+0.9
1,201,979	-		DZA65_RS05830	0.71	-1.9
1,201,983	+		DZA65_RS05830	0.72	-2.0
1,201,983	+				-1.6
1,201,984	-		DZA65_RS05830	0.72	-2.8
1,202,091	+		DZA65_RS05830	0.80	-2.2
1,202,091	+		DZA65_RS05830	0.80	-0.4
1,202,091	+		DZA65_RS05830	0.80	-3.1
1,202,091	+		DZA65_RS05830	0.80	-1.8
1,202,091	+		DZA65_RS05830	0.80	-2.1
1,202,092	-		DZA65_RS05830	0.80	+0.8
1,202,092	-		DZA65_RS05830	0.80	-1.1
1,202,092	-		DZA65_RS05830	0.80	-0.3
1,202,092	-		DZA65_RS05830	0.80	+0.8
1,202,133	+		DZA65_RS05830	0.83	-1.6
1,202,134	-		DZA65_RS05830	0.83	-1.6
1,202,134	-		DZA65_RS05830	0.83	-0.6
1,202,199	+		DZA65_RS05830	0.88	+2.7
1,202,199	+		DZA65_RS05830	0.88	-1.1
1,202,199	+		DZA65_RS05830	0.88	-0.5
1,202,199	+		DZA65_RS05830	0.88	-1.9
1,202,199	+		DZA65_RS05830	0.88	-1.1
1,202,200	-		DZA65_RS05830	0.88	-1.1
1,202,200	-		DZA65_RS05830	0.88	-0.4
1,202,200	-		DZA65_RS05830	0.88	-1.1
1,202,200	-		DZA65_RS05830	0.88	-0.1
1,202,292	+				-2.1
1,202,292	+				-1.4
1,202,293	-				-0.6
1,202,314	+				+2.4
1,202,315	-				+0.1
1,202,322	+				-0.6
1,202,416	+				-0.6
1,202,416	+				-1.1
1,202,432	+				+2.5
1,202,432	+				+1.7
1,202,433	-				-2.6
1,202,436	+				+1.1
1,202,436	+				-1.4
1,202,437	-				-1.1
1,202,437	-				+0.0
1,202,457	+				-1.9
1,202,457	+				-1.3
1,202,457	+				-0.2
1,202,457	+				-0.1
1,202,457	+				-2.2
1,202,457	+				-1.4
1,202,457	+				-0.1
1,202,458	-				+2.9
1,202,458	-				-2.2
1,202,458	-				+1.1
1,202,458	-				+1.7
1,202,458	-				-1.6
1,202,489	+				+0.5
1,202,489	+				+1.9
1,202,489	+				-3.2
1,202,489	+				-1.5
1,202,489	+				+1.4
1,202,489	+				-0.4
1,202,489	+				+0.1
1,202,490	-				+0.9
1,202,490	-				-2.9
1,202,490	-				-1.8
1,202,490	-				-2.4
1,202,548	+				-1.8
1,202,548	+				+0.6
1,202,549	-				+1.7
1,202,589	-				-0.6
1,202,589	-				-1.0
1,202,623	+		DZA65_RS05835	0.12	+0.9
1,202,623	+		DZA65_RS05835	0.12	+0.0
1,202,623	+		DZA65_RS05835	0.12	-1.3
1,202,623	+		DZA65_RS05835	0.12	+1.5
1,202,623	+		DZA65_RS05835	0.12	+0.6
1,202,623	+		DZA65_RS05835	0.12	-1.9
1,202,623	+		DZA65_RS05835	0.12	+0.8
1,202,623	+		DZA65_RS05835	0.12	-1.5
1,202,623	+		DZA65_RS05835	0.12	-1.1
1,202,624	-		DZA65_RS05835	0.12	+1.3
1,202,624	-		DZA65_RS05835	0.12	+0.2
1,202,624	-		DZA65_RS05835	0.12	+0.3
1,202,624	-		DZA65_RS05835	0.12	-0.4
1,202,624	-		DZA65_RS05835	0.12	+0.9
1,202,624	-		DZA65_RS05835	0.12	-0.6
1,202,624	-		DZA65_RS05835	0.12	+0.3
1,202,625	+		DZA65_RS05835	0.12	-2.3
1,202,625	+		DZA65_RS05835	0.12	-2.5
1,202,625	+		DZA65_RS05835	0.12	+1.4
1,202,625	+		DZA65_RS05835	0.12	+0.5
1,202,625	+		DZA65_RS05835	0.12	-0.4
1,202,625	+		DZA65_RS05835	0.12	+1.6
1,202,626	-		DZA65_RS05835	0.12	-3.0
1,202,626	-		DZA65_RS05835	0.12	-1.2
1,202,626	-		DZA65_RS05835	0.12	-1.1
1,202,626	-		DZA65_RS05835	0.12	-3.3
1,202,626	-		DZA65_RS05835	0.12	+0.2
1,202,722	+		DZA65_RS05835	0.20	-1.1
1,202,722	+		DZA65_RS05835	0.20	-1.1
1,202,722	+		DZA65_RS05835	0.20	-1.5
1,202,723	-		DZA65_RS05835	0.20	+0.1
1,202,740	+		DZA65_RS05835	0.21	-1.1
1,202,740	+		DZA65_RS05835	0.21	-1.9
1,202,740	+		DZA65_RS05835	0.21	-1.5
1,202,740	+		DZA65_RS05835	0.21	+2.9
1,202,740	+		DZA65_RS05835	0.21	+0.1
1,202,740	+		DZA65_RS05835	0.21	-1.9
1,202,741	-		DZA65_RS05835	0.21	+0.5
1,202,741	-		DZA65_RS05835	0.21	-2.2
1,202,741	-		DZA65_RS05835	0.21	+0.5
1,202,794	+		DZA65_RS05835	0.25	-2.3
1,202,794	+		DZA65_RS05835	0.25	-0.1
1,202,794	+		DZA65_RS05835	0.25	-0.3
1,202,794	+		DZA65_RS05835	0.25	+0.9
1,202,794	+		DZA65_RS05835	0.25	-0.4
1,202,794	+		DZA65_RS05835	0.25	+1.3
1,202,794	+		DZA65_RS05835	0.25	-0.0
1,202,794	+		DZA65_RS05835	0.25	+0.6
1,202,794	+		DZA65_RS05835	0.25	-1.1
1,202,794	+		DZA65_RS05835	0.25	-0.1
1,202,794	+		DZA65_RS05835	0.25	-1.4
1,202,794	+		DZA65_RS05835	0.25	-1.9
1,202,794	+		DZA65_RS05835	0.25	-1.1
1,202,794	+		DZA65_RS05835	0.25	-1.5
1,202,794	+		DZA65_RS05835	0.25	+0.1
1,202,794	+		DZA65_RS05835	0.25	-0.9
1,202,794	+		DZA65_RS05835	0.25	-2.1
1,202,794	+		DZA65_RS05835	0.25	+2.1
1,202,794	+		DZA65_RS05835	0.25	-0.1
1,202,794	+		DZA65_RS05835	0.25	-1.9
1,202,794	+		DZA65_RS05835	0.25	-0.1
1,202,795	-		DZA65_RS05835	0.25	-1.9
1,202,795	-		DZA65_RS05835	0.25	-1.1
1,202,795	-		DZA65_RS05835	0.25	-0.2
1,202,795	-		DZA65_RS05835	0.25	-0.3
1,202,795	-		DZA65_RS05835	0.25	+0.2
1,202,795	-		DZA65_RS05835	0.25	+2.5
1,202,795	-		DZA65_RS05835	0.25	-0.4
1,202,795	-		DZA65_RS05835	0.25	-2.4
1,202,795	-		DZA65_RS05835	0.25	+1.2
1,202,795	-		DZA65_RS05835	0.25	+0.1
1,202,795	-		DZA65_RS05835	0.25	+0.4
1,202,795	-		DZA65_RS05835	0.25	-1.1
1,202,795	-		DZA65_RS05835	0.25	-0.9
1,202,795	-		DZA65_RS05835	0.25	+1.0
1,202,795	-		DZA65_RS05835	0.25	+1.7
1,202,795	-		DZA65_RS05835	0.25	+1.9
1,202,795	-		DZA65_RS05835	0.25	+1.9
1,202,795	-		DZA65_RS05835	0.25	-0.1
1,202,795	-		DZA65_RS05835	0.25	+0.8
1,202,795	-		DZA65_RS05835	0.25	+0.9
1,202,797	-		DZA65_RS05835	0.25	-1.6
1,202,805	-		DZA65_RS05835	0.26	-1.4
1,202,960	+		DZA65_RS05835	0.37	-0.3
1,202,960	+		DZA65_RS05835	0.37	+0.7
1,202,960	+		DZA65_RS05835	0.37	-1.9
1,202,960	+				+0.2
1,202,960	+		DZA65_RS05835	0.37	+1.5
1,202,960	+		DZA65_RS05835	0.37	+0.5
1,202,961	-		DZA65_RS05835	0.37	-0.1
1,202,961	-		DZA65_RS05835	0.37	-1.4
1,202,961	-		DZA65_RS05835	0.37	-2.9
1,202,964	+		DZA65_RS05835	0.37	-1.4
1,202,964	+		DZA65_RS05835	0.37	-0.4
1,202,964	+		DZA65_RS05835	0.37	-0.6
1,202,964	+		DZA65_RS05835	0.37	+0.8
1,202,964	+		DZA65_RS05835	0.37	-3.0
1,202,964	+		DZA65_RS05835	0.37	-0.6
1,202,964	+		DZA65_RS05835	0.37	+0.5
1,202,964	+		DZA65_RS05835	0.37	-1.1
1,202,964	+				+2.3
1,202,965	-		DZA65_RS05835	0.37	+2.4
1,202,965	-		DZA65_RS05835	0.37	-0.6
1,202,965	-		DZA65_RS05835	0.37	+2.4
1,202,965	-		DZA65_RS05835	0.37	-2.4
1,202,965	-		DZA65_RS05835	0.37	-0.9
1,202,965	-		DZA65_RS05835	0.37	-0.9
1,202,965	-		DZA65_RS05835	0.37	-0.4
1,203,012	+		DZA65_RS05835	0.41	+2.4
1,203,013	-		DZA65_RS05835	0.41	+1.9
1,203,013	-		DZA65_RS05835	0.41	-2.4
1,203,183	+		DZA65_RS05835	0.54	+0.6
1,203,196	+		DZA65_RS05835	0.55	+0.4
1,203,196	+		DZA65_RS05835	0.55	-1.1
1,203,196	+		DZA65_RS05835	0.55	+1.6
1,203,196	+		DZA65_RS05835	0.55	-2.4
1,203,196	+		DZA65_RS05835	0.55	+0.4
1,203,196	+		DZA65_RS05835	0.55	-2.6
1,203,196	+		DZA65_RS05835	0.55	+0.8
1,203,196	+		DZA65_RS05835	0.55	-2.2
1,203,196	+		DZA65_RS05835	0.55	+1.9
1,203,196	+		DZA65_RS05835	0.55	-0.4
1,203,196	+		DZA65_RS05835	0.55	-1.4
1,203,197	-		DZA65_RS05835	0.55	-1.4
1,203,197	-		DZA65_RS05835	0.55	-1.6
1,203,197	-		DZA65_RS05835	0.55	-1.6
1,203,197	-		DZA65_RS05835	0.55	-0.4
1,203,197	-		DZA65_RS05835	0.55	-0.3
1,203,230	-		DZA65_RS05835	0.57	-1.6
1,203,245	+				-0.6
1,203,245	+		DZA65_RS05835	0.58	+1.5
1,203,246	-		DZA65_RS05835	0.58	-1.1
1,203,285	+		DZA65_RS05835	0.61	-1.4
1,203,285	+		DZA65_RS05835	0.61	-2.4
1,203,285	+		DZA65_RS05835	0.61	-1.4
1,203,286	-		DZA65_RS05835	0.61	+1.6
1,203,286	-		DZA65_RS05835	0.61	+1.1
1,203,286	-		DZA65_RS05835	0.61	-0.1