Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05335

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,095,769	+		DZA65_RS05320	0.86	-0.1
1,095,784	-		DZA65_RS05320	0.88	-1.1
1,095,822	-				+0.9
1,095,852	+				-1.1
1,095,872	+				-2.3
1,095,872	+				-2.3
1,095,872	+				-0.8
1,095,872	+				-2.0
1,095,872	+				-3.6
1,095,872	+				+0.8
1,095,873	-				+0.1
1,095,873	-				+2.3
1,095,873	-				-2.0
1,095,873	-				+1.6
1,095,911	+				+0.5
1,095,911	+				-1.4
1,095,911	+				-1.7
1,095,926	+				-0.1
1,095,926	+				-0.3
1,095,927	-		DZA65_RS05325	0.10	-2.1
1,096,082	+		DZA65_RS05325	0.48	-1.7
1,096,083	-		DZA65_RS05325	0.49	-0.1
1,096,124	+		DZA65_RS05325	0.59	+0.7
1,096,125	-		DZA65_RS05325	0.59	+1.4
1,096,125	-		DZA65_RS05325	0.59	+1.6
1,096,174	+		DZA65_RS05325	0.71	-2.1
1,096,174	+		DZA65_RS05325	0.71	-1.9
1,096,174	+		DZA65_RS05325	0.71	+0.9
1,096,175	-		DZA65_RS05325	0.71	-1.7
1,096,353	+		DZA65_RS05330	0.24	-0.7
1,096,353	+		DZA65_RS05330	0.24	-0.4
1,096,377	+		DZA65_RS05330	0.30	+1.6
1,096,377	+		DZA65_RS05330	0.30	-1.4
1,096,378	-		DZA65_RS05330	0.30	-2.4
1,096,378	-		DZA65_RS05330	0.30	-0.7
1,096,378	-		DZA65_RS05330	0.30	-0.4
1,096,378	-		DZA65_RS05330	0.30	-0.7
1,096,385	+		DZA65_RS05330	0.32	-0.5
1,096,385	+		DZA65_RS05330	0.32	-2.3
1,096,385	+		DZA65_RS05330	0.32	+0.9
1,096,385	+		DZA65_RS05330	0.32	-2.4
1,096,386	-		DZA65_RS05330	0.32	-2.4
1,096,396	-		DZA65_RS05330	0.35	+0.5
1,096,396	-		DZA65_RS05330	0.35	+0.2
1,096,658	+				-3.6
1,096,658	+				-0.1
1,096,659	-				+0.2
1,096,668	+				-2.7
1,096,668	+				-1.0
1,096,668	+				+1.4
1,096,669	-				-3.1
1,096,678	+				+2.2
1,096,678	+				+0.9
1,096,678	+				+1.1
1,096,678	+				-3.0
1,096,678	+				+1.8
1,096,678	+				-1.4
1,096,678	+				-0.7
1,096,679	-				+0.5
1,096,679	-				-0.1
1,096,679	-				+0.7
1,096,679	-				-1.4
1,096,679	-				+0.6
1,096,714	+				+2.9
1,096,714	+				-1.8
1,096,714	+				-1.1
1,096,797	+				-1.1
1,096,826	+				+1.4
1,096,826	+				-0.7
1,096,852	+				-1.7
1,096,853	-				+0.3
1,096,876	+				-1.4
1,096,961	+				-0.4
1,097,085	-		DZA65_RS05335	0.13	-3.0
1,097,247	+		DZA65_RS05335	0.19	+1.7
1,097,247	+				+0.3
1,097,248	-		DZA65_RS05335	0.19	-1.6
1,097,321	-		DZA65_RS05335	0.21	+0.6
1,097,332	+		DZA65_RS05335	0.22	+0.9
1,097,333	-		DZA65_RS05335	0.22	-4.3
1,097,360	+		DZA65_RS05335	0.23	-0.1
1,097,361	-		DZA65_RS05335	0.23	+0.4
1,097,361	-		DZA65_RS05335	0.23	-1.1
1,097,369	+		DZA65_RS05335	0.23	-2.3
1,097,369	+		DZA65_RS05335	0.23	-0.4
1,097,372	+		DZA65_RS05335	0.23	+3.1
1,097,402	+		DZA65_RS05335	0.24	+0.5
1,097,402	+		DZA65_RS05335	0.24	+0.9
1,097,464	+		DZA65_RS05335	0.26	-2.1
1,097,464	+		DZA65_RS05335	0.26	-1.1
1,097,464	+		DZA65_RS05335	0.26	-1.2
1,097,464	+		DZA65_RS05335	0.26	-0.7
1,097,464	+		DZA65_RS05335	0.26	-0.5
1,097,491	+		DZA65_RS05335	0.27	-1.4
1,097,537	+		DZA65_RS05335	0.29	-0.4
1,097,537	+		DZA65_RS05335	0.29	-1.4
1,097,537	+		DZA65_RS05335	0.29	-1.4
1,097,537	+		DZA65_RS05335	0.29	+0.4
1,097,537	+		DZA65_RS05335	0.29	-1.4
1,097,537	+		DZA65_RS05335	0.29	+1.0
1,097,537	+		DZA65_RS05335	0.29	+2.2
1,097,538	-		DZA65_RS05335	0.29	-0.1
1,097,538	-		DZA65_RS05335	0.29	-1.1
1,097,538	-		DZA65_RS05335	0.29	+1.4
1,097,538	-		DZA65_RS05335	0.29	+3.4
1,097,538	-		DZA65_RS05335	0.29	-0.1
1,097,538	-		DZA65_RS05335	0.29	+0.6
1,097,538	-		DZA65_RS05335	0.29	+3.4
1,097,538	-		DZA65_RS05335	0.29	+0.7
1,097,620	+		DZA65_RS05335	0.32	-0.7
1,097,624	+		DZA65_RS05335	0.32	+1.9
1,097,624	+		DZA65_RS05335	0.32	-0.6
1,097,624	+		DZA65_RS05335	0.32	-2.1
1,097,624	+		DZA65_RS05335	0.32	+0.9
1,097,624	+		DZA65_RS05335	0.32	-0.7
1,097,624	+		DZA65_RS05335	0.32	+1.2
1,097,624	+		DZA65_RS05335	0.32	+1.2
1,097,624	+		DZA65_RS05335	0.32	-1.0
1,097,624	+		DZA65_RS05335	0.32	+2.6
1,097,624	+		DZA65_RS05335	0.32	-0.7
1,097,624	+		DZA65_RS05335	0.32	-0.7
1,097,624	+		DZA65_RS05335	0.32	+0.5
1,097,624	+		DZA65_RS05335	0.32	-1.1
1,097,624	+		DZA65_RS05335	0.32	-1.1
1,097,624	+		DZA65_RS05335	0.32	-1.4
1,097,624	+		DZA65_RS05335	0.32	+2.3
1,097,624	+		DZA65_RS05335	0.32	+1.5
1,097,624	+		DZA65_RS05335	0.32	-1.4
1,097,624	+		DZA65_RS05335	0.32	-1.0
1,097,624	+		DZA65_RS05335	0.32	-1.5
1,097,624	+		DZA65_RS05335	0.32	-0.3
1,097,625	-		DZA65_RS05335	0.32	+1.2
1,097,625	-		DZA65_RS05335	0.32	-0.4
1,097,625	-		DZA65_RS05335	0.32	+2.3
1,097,625	-		DZA65_RS05335	0.32	-1.1
1,097,625	-		DZA65_RS05335	0.32	+2.1
1,097,625	-		DZA65_RS05335	0.32	-1.2
1,097,625	-				-2.1
1,097,625	-		DZA65_RS05335	0.32	-2.3
1,097,625	-		DZA65_RS05335	0.32	-0.9
1,097,625	-		DZA65_RS05335	0.32	-2.3
1,097,625	-		DZA65_RS05335	0.32	+1.0
1,097,625	-		DZA65_RS05335	0.32	-2.9
1,097,629	+		DZA65_RS05335	0.32	+1.7
1,097,629	+		DZA65_RS05335	0.32	+0.6
1,097,629	+		DZA65_RS05335	0.32	+0.5
1,097,629	+		DZA65_RS05335	0.32	-2.4
1,097,629	+		DZA65_RS05335	0.32	+1.0
1,097,629	+		DZA65_RS05335	0.32	-0.1
1,097,629	+		DZA65_RS05335	0.32	+0.5
1,097,629	+		DZA65_RS05335	0.32	-0.7
1,097,630	-		DZA65_RS05335	0.32	+1.6
1,097,630	-		DZA65_RS05335	0.32	-0.8
1,097,630	-		DZA65_RS05335	0.32	+0.1
1,097,630	-		DZA65_RS05335	0.32	-2.6
1,097,633	+		DZA65_RS05335	0.32	-1.0
1,097,633	+		DZA65_RS05335	0.32	-3.9
1,097,634	-		DZA65_RS05335	0.32	-0.5
1,097,634	-		DZA65_RS05335	0.32	-2.9
1,097,745	+		DZA65_RS05335	0.36	-0.7
1,097,752	+		DZA65_RS05335	0.36	-0.7
1,097,753	-		DZA65_RS05335	0.36	-1.7
1,097,819	+		DZA65_RS05335	0.39	+0.7
1,097,859	-		DZA65_RS05335	0.40	+0.6
1,097,887	+		DZA65_RS05335	0.41	+0.7
1,097,888	-		DZA65_RS05335	0.41	+1.1
1,097,911	+		DZA65_RS05335	0.42	-1.1
1,097,912	-		DZA65_RS05335	0.42	-1.1
1,097,927	+		DZA65_RS05335	0.42	+1.4
1,097,927	+		DZA65_RS05335	0.42	+1.3
1,097,927	+		DZA65_RS05335	0.42	-1.9
1,097,927	+		DZA65_RS05335	0.42	-0.1
1,097,928	-		DZA65_RS05335	0.42	-2.6
1,097,928	-		DZA65_RS05335	0.42	+0.0
1,097,972	+		DZA65_RS05335	0.44	+0.6
1,097,972	+		DZA65_RS05335	0.44	-0.1
1,097,972	+		DZA65_RS05335	0.44	+0.5
1,097,972	+		DZA65_RS05335	0.44	-2.3
1,097,973	-		DZA65_RS05335	0.44	-0.5
1,097,973	-		DZA65_RS05335	0.44	+1.9
1,097,973	-		DZA65_RS05335	0.44	-0.1
1,097,990	+		DZA65_RS05335	0.45	-1.4
1,097,991	-		DZA65_RS05335	0.45	-0.1
1,098,072	+		DZA65_RS05335	0.47	-0.1
1,098,095	-		DZA65_RS05335	0.48	+0.2
1,098,095	-		DZA65_RS05335	0.48	-0.4
1,098,104	+		DZA65_RS05335	0.48	-1.1
1,098,105	-		DZA65_RS05335	0.48	-2.4
1,098,105	-		DZA65_RS05335	0.48	-0.3
1,098,129	+		DZA65_RS05335	0.49	-1.1
1,098,129	+		DZA65_RS05335	0.49	-1.7
1,098,129	+				+0.9
1,098,130	-		DZA65_RS05335	0.49	+0.9
1,098,212	+		DZA65_RS05335	0.52	+1.0
1,098,212	+		DZA65_RS05335	0.52	+3.1
1,098,212	+		DZA65_RS05335	0.52	+0.6
1,098,212	+		DZA65_RS05335	0.52	+1.3
1,098,214	+		DZA65_RS05335	0.52	-0.7
1,098,214	+		DZA65_RS05335	0.52	+0.3
1,098,214	+		DZA65_RS05335	0.52	-0.9
1,098,214	+		DZA65_RS05335	0.52	-3.0
1,098,280	+		DZA65_RS05335	0.55	+3.2
1,098,281	-		DZA65_RS05335	0.55	-1.7
1,098,302	+		DZA65_RS05335	0.55	+0.7
1,098,302	+		DZA65_RS05335	0.55	-1.4
1,098,302	+		DZA65_RS05335	0.55	-2.1
1,098,302	+		DZA65_RS05335	0.55	+2.1
1,098,303	-		DZA65_RS05335	0.55	+2.5
1,098,303	-		DZA65_RS05335	0.55	-1.4
1,098,303	-		DZA65_RS05335	0.55	-0.7
1,098,303	-		DZA65_RS05335	0.55	-0.7
1,098,303	-		DZA65_RS05335	0.55	-0.4
1,098,303	-		DZA65_RS05335	0.55	-1.7
1,098,346	+		DZA65_RS05335	0.57	-0.3
1,098,346	+		DZA65_RS05335	0.57	-2.1
1,098,346	+		DZA65_RS05335	0.57	+2.1
1,098,346	+		DZA65_RS05335	0.57	-0.4
1,098,346	+		DZA65_RS05335	0.57	+1.8
1,098,346	+		DZA65_RS05335	0.57	-2.7
1,098,346	+		DZA65_RS05335	0.57	-1.1
1,098,347	-		DZA65_RS05335	0.57	-2.9
1,098,347	-		DZA65_RS05335	0.57	+3.6
1,098,347	-		DZA65_RS05335	0.57	-1.9
1,098,347	-		DZA65_RS05335	0.57	-1.9
1,098,347	-		DZA65_RS05335	0.57	-3.0
1,098,417	-		DZA65_RS05335	0.59	-3.5
1,098,449	+		DZA65_RS05335	0.60	+0.6
1,098,449	+		DZA65_RS05335	0.60	+2.1
1,098,449	+		DZA65_RS05335	0.60	+0.2
1,098,521	+		DZA65_RS05335	0.63	+1.1
1,098,566	+				-1.1
1,098,567	-		DZA65_RS05335	0.64	+0.6
1,098,567	-		DZA65_RS05335	0.64	+1.7
1,098,567	-		DZA65_RS05335	0.64	-0.9
1,098,567	-		DZA65_RS05335	0.64	+0.8
1,098,567	-		DZA65_RS05335	0.64	+1.6
1,098,567	-		DZA65_RS05335	0.64	+0.9
1,098,617	+		DZA65_RS05335	0.66	-1.1
1,098,656	+		DZA65_RS05335	0.67	-0.4
1,098,656	+		DZA65_RS05335	0.67	-1.7
1,098,657	-		DZA65_RS05335	0.68	+0.2
1,098,657	-		DZA65_RS05335	0.68	-0.5
1,098,657	-				-1.1
1,098,657	-		DZA65_RS05335	0.68	-1.9
1,098,701	+		DZA65_RS05335	0.69	-1.1
1,098,702	-		DZA65_RS05335	0.69	-0.7
1,098,702	-		DZA65_RS05335	0.69	-0.2
1,098,764	+		DZA65_RS05335	0.71	-0.4
1,098,980	+		DZA65_RS05335	0.79	+2.4
1,098,980	+		DZA65_RS05335	0.79	+0.7
1,098,980	+		DZA65_RS05335	0.79	-3.1
1,098,980	+		DZA65_RS05335	0.79	-1.1
1,098,980	+		DZA65_RS05335	0.79	-2.8
1,098,980	+		DZA65_RS05335	0.79	-1.4
1,098,980	+		DZA65_RS05335	0.79	+0.6
1,098,980	+		DZA65_RS05335	0.79	+0.9
1,098,981	-		DZA65_RS05335	0.79	-1.2
1,098,981	-		DZA65_RS05335	0.79	+0.5
1,098,981	-		DZA65_RS05335	0.79	-1.7
1,098,981	-		DZA65_RS05335	0.79	+2.1
1,098,981	-		DZA65_RS05335	0.79	-1.1
1,098,981	-		DZA65_RS05335	0.79	-2.6
1,098,981	-		DZA65_RS05335	0.79	-0.1
1,098,981	-		DZA65_RS05335	0.79	-1.7
1,098,982	+		DZA65_RS05335	0.79	-1.4
1,098,983	-		DZA65_RS05335	0.79	+1.3
1,098,983	-		DZA65_RS05335	0.79	-1.0
1,098,995	+		DZA65_RS05335	0.79	+0.3
1,099,019	+		DZA65_RS05335	0.80	-0.6
1,099,019	+		DZA65_RS05335	0.80	-0.7
1,099,024	+		DZA65_RS05335	0.80	-1.4
1,099,024	+		DZA65_RS05335	0.80	+0.2
1,099,024	+		DZA65_RS05335	0.80	-0.5
1,099,025	-		DZA65_RS05335	0.80	-0.7
1,099,041	+		DZA65_RS05335	0.81	+0.5
1,099,041	+		DZA65_RS05335	0.81	+0.7
1,099,041	+		DZA65_RS05335	0.81	+0.6
1,099,041	+		DZA65_RS05335	0.81	-0.7
1,099,041	+		DZA65_RS05335	0.81	-0.7
1,099,041	+		DZA65_RS05335	0.81	+1.2
1,099,042	-		DZA65_RS05335	0.81	-2.1
1,099,042	-		DZA65_RS05335	0.81	-1.9
1,099,042	-		DZA65_RS05335	0.81	-1.4
1,099,042	-		DZA65_RS05335	0.81	+1.7
1,099,073	-		DZA65_RS05335	0.82	+1.0
1,099,175	+		DZA65_RS05335	0.85	-1.4
1,099,175	+		DZA65_RS05335	0.85	+4.0
1,099,176	-		DZA65_RS05335	0.85	+1.3
1,099,181	+		DZA65_RS05335	0.86	-0.9
1,099,182	-		DZA65_RS05335	0.86	-0.9
1,099,190	+		DZA65_RS05335	0.86	-1.0
1,099,191	-		DZA65_RS05335	0.86	-3.0
1,099,258	+		DZA65_RS05335	0.88	+0.9
1,099,258	+		DZA65_RS05335	0.88	+0.9
1,099,258	+		DZA65_RS05335	0.88	-0.3
1,099,258	+		DZA65_RS05335	0.88	+0.4
1,099,258	+		DZA65_RS05335	0.88	+1.4
1,099,258	+		DZA65_RS05335	0.88	-0.7
1,099,259	-		DZA65_RS05335	0.88	-0.1
1,099,259	-		DZA65_RS05335	0.88	+1.3
1,099,259	-		DZA65_RS05335	0.88	-1.9
1,099,259	-		DZA65_RS05335	0.88	-2.4
1,099,394	-				-2.8
1,099,497	-				-1.1
1,099,523	+				-2.1
1,099,523	+				-0.8
1,099,523	+				-2.4
1,099,523	+				-0.7
1,099,523	+				+0.4
1,099,523	+				+1.3
1,099,524	-				+0.1
1,099,561	-				-0.8
1,099,595	+				-0.1
1,099,595	+				-0.1
1,099,596	-				-1.7
1,099,596	-				-1.6
1,099,596	-				-0.1
1,099,596	-				-0.4
1,099,596	-				-0.7
1,099,669	+				-1.1
1,099,670	-				-0.7
1,099,670	-				+0.9
1,099,670	-				-1.7
1,099,670	-				-2.3
1,099,687	+				-3.6
1,099,688	-				-3.0
1,099,688	-				-3.0
1,099,712	+				-0.9
1,099,713	-				+2.7
1,099,720	+				-1.7
1,099,720	+				-2.9
1,099,721	-				+2.7
1,099,734	+				-1.7
1,099,734	+				-0.3
1,099,734	+				+2.5
1,099,744	+				+0.2
1,099,748	+				+2.3
1,099,748	+				-0.9
1,099,748	+				-1.9
1,099,749	-				-2.6
1,099,749	-				+0.6
1,099,749	-				+1.2
1,099,749	-				-1.9
1,099,749	-				-0.7
1,099,749	-				+1.7
1,099,749	-				+0.6
1,099,759	-				+0.9
1,099,772	+				-1.9
1,099,776	+				-0.6
1,099,776	+				-0.4
1,099,776	+				+0.8
1,099,776	+				-0.7
1,099,776	+				-0.4
1,099,776	+				+1.8
1,099,776	+				-0.7
1,099,776	+				+1.0
1,099,777	-				+4.2
1,099,777	-				-1.1
1,099,777	-				+1.3
1,099,777	-				+2.5
1,099,777	-				-2.1
1,099,812	+				+0.7
1,099,812	+				-0.1
1,099,812	+				-2.6
1,099,813	-				+0.5
1,099,813	-				-1.1
1,099,813	-				-2.4
1,099,818	+				-3.0
1,099,818	+				-0.1
1,099,818	+				+1.5
1,099,818	+				-1.6
1,099,818	+				-1.4
1,099,818	+				+0.9
1,099,819	-				+1.7
1,099,819	-				+0.9
1,099,819	-				-0.3
1,099,819	-				-2.1
1,099,819	-				+0.9
1,099,951	+		DZA65_RS05340	0.13	+0.1
1,099,951	+		DZA65_RS05340	0.13	+3.6
1,099,951	+		DZA65_RS05340	0.13	-0.6
1,099,990	-		DZA65_RS05340	0.16	-0.9
1,100,066	-		DZA65_RS05340	0.22	-0.3
1,100,231	+		DZA65_RS05340	0.34	+1.2
1,100,231	+		DZA65_RS05340	0.34	-1.9
1,100,231	+		DZA65_RS05340	0.34	+0.3
1,100,231	+		DZA65_RS05340	0.34	-2.9
1,100,231	+		DZA65_RS05340	0.34	+1.6
1,100,232	-		DZA65_RS05340	0.34	-3.2
1,100,234	+		DZA65_RS05340	0.34	-1.4
1,100,234	+		DZA65_RS05340	0.34	-2.4
1,100,234	+		DZA65_RS05340	0.34	-0.6
1,100,235	-		DZA65_RS05340	0.34	-1.6
1,100,235	-		DZA65_RS05340	0.34	-1.7
1,100,235	-		DZA65_RS05340	0.34	+0.9
1,100,235	-		DZA65_RS05340	0.34	+1.0
1,100,235	-				-2.1
1,100,235	-		DZA65_RS05340	0.34	-1.1
1,100,295	+		DZA65_RS05340	0.39	-1.1
1,100,295	+		DZA65_RS05340	0.39	-1.9
1,100,296	-		DZA65_RS05340	0.39	-0.7
1,100,296	-		DZA65_RS05340	0.39	-2.9
1,100,319	-		DZA65_RS05340	0.40	-1.7
1,100,374	+		DZA65_RS05340	0.45	-0.9
1,100,374	+		DZA65_RS05340	0.45	-1.1
1,100,374	+		DZA65_RS05340	0.45	-3.1
1,100,375	-		DZA65_RS05340	0.45	-1.1
1,100,375	-		DZA65_RS05340	0.45	-0.8
1,100,375	-		DZA65_RS05340	0.45	+0.0
1,100,375	-		DZA65_RS05340	0.45	+1.3
1,100,375	-		DZA65_RS05340	0.45	-1.7
1,100,375	-		DZA65_RS05340	0.45	-0.4
1,100,376	+		DZA65_RS05340	0.45	-1.1
1,100,376	+		DZA65_RS05340	0.45	-2.1
1,100,376	+		DZA65_RS05340	0.45	-0.7
1,100,376	+		DZA65_RS05340	0.45	+0.6
1,100,376	+		DZA65_RS05340	0.45	-2.1
1,100,376	+		DZA65_RS05340	0.45	-0.3
1,100,377	-		DZA65_RS05340	0.45	-1.7
1,100,377	-		DZA65_RS05340	0.45	-1.9
1,100,377	-		DZA65_RS05340	0.45	+0.2
1,100,439	-		DZA65_RS05340	0.49	-1.1
1,100,443	+		DZA65_RS05340	0.50	-1.3
1,100,443	+		DZA65_RS05340	0.50	+0.2
1,100,444	-		DZA65_RS05340	0.50	+0.3
1,100,444	-		DZA65_RS05340	0.50	-0.7
1,100,444	-		DZA65_RS05340	0.50	+0.2
1,100,444	-		DZA65_RS05340	0.50	+0.1
1,100,444	-		DZA65_RS05340	0.50	-2.6