Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04575 and DZA65_RS04580 are separated by 142 nucleotides DZA65_RS04580 and DZA65_RS04585 are separated by 2 nucleotides DZA65_RS04585 and DZA65_RS04590 are separated by 130 nucleotides
DZA65_RS04575: DZA65_RS04575 - MipA/OmpV family protein, at 955,986 to 956,771
_RS04575
DZA65_RS04580: DZA65_RS04580 - response regulator transcription factor, at 956,914 to 957,603
_RS04580
DZA65_RS04585: DZA65_RS04585 - HAMP domain-containing protein, at 957,606 to 958,775
_RS04585
DZA65_RS04590: DZA65_RS04590 - efflux RND transporter periplasmic adaptor subunit, at 958,906 to 960,048
_RS04590
Position (kb) 957
958
959 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 956.738 kb on + strand at 956.738 kb on + strand at 956.738 kb on + strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.744 kb on + strand at 956.744 kb on + strand at 956.745 kb on - strand at 956.745 kb on - strand at 956.746 kb on + strand at 956.746 kb on + strand at 956.747 kb on - strand at 956.747 kb on - strand at 956.747 kb on - strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.757 kb on - strand at 956.757 kb on - strand at 956.757 kb on - strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.795 kb on + strand at 956.796 kb on - strand at 956.796 kb on - strand at 956.837 kb on - strand at 956.837 kb on - strand at 956.851 kb on - strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.855 kb on + strand at 956.855 kb on + strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.874 kb on - strand at 956.874 kb on - strand at 956.898 kb on + strand at 956.977 kb on + strand at 956.977 kb on + strand at 956.982 kb on - strand at 956.982 kb on - strand at 956.982 kb on - strand at 956.982 kb on - strand at 957.211 kb on + strand, within DZA65_RS04580 at 957.211 kb on + strand, within DZA65_RS04580 at 957.211 kb on + strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.226 kb on + strand, within DZA65_RS04580 at 957.226 kb on + strand, within DZA65_RS04580 at 957.227 kb on - strand at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.523 kb on - strand, within DZA65_RS04580 at 957.523 kb on - strand, within DZA65_RS04580 at 957.612 kb on - strand at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.744 kb on - strand, within DZA65_RS04585 at 957.811 kb on - strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 958.319 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.429 kb on - strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.570 kb on - strand, within DZA65_RS04585 at 958.752 kb on - strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.874 kb on - strand at 958.874 kb on - strand at 958.891 kb on - strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.946 kb on + strand at 958.946 kb on + strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 959.332 kb on - strand, within DZA65_RS04590 at 959.365 kb on - strand, within DZA65_RS04590 at 959.470 kb on + strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.642 kb on + strand, within DZA65_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 956,738 + -2.1 956,738 + -1.7 956,738 + -3.5 956,739 - +2.0 956,739 - -0.0 956,739 - +4.0 956,739 - -1.1 956,742 + -1.9 956,742 + -0.1 956,742 + -0.6 956,742 + +0.6 956,742 + +1.0 956,742 + +2.9 956,742 + +0.9 956,742 + -0.9 956,742 + +0.6 956,742 + -2.3 956,742 + -1.1 956,742 + +0.9 956,742 + +1.7 956,742 + +1.1 956,742 + -1.1 956,743 - +0.5 956,743 - +3.7 956,743 - +0.3 956,743 - +3.1 956,743 - -1.1 956,743 - -2.7 956,743 - -1.1 956,743 - +1.9 956,743 - -1.4 956,743 - +1.8 956,743 - -1.4 956,744 + -2.0 956,744 + +0.7 956,745 - -2.1 956,745 - -2.3 956,746 + +0.3 956,746 + +4.8 956,747 - +1.7 956,747 - -0.9 956,747 - -0.9 956,756 + +1.9 956,756 + -2.7 956,756 + -3.0 956,756 + +0.5 956,756 + +2.7 956,757 - +0.2 956,757 - +1.5 956,757 - -3.4 956,766 + +1.1 956,766 + -1.4 956,766 + -2.3 956,766 + +0.2 956,767 - +0.6 956,767 - -1.1 956,767 - -1.7 956,767 - -0.3 956,795 + +0.2 956,796 - +3.9 956,796 - -1.1 956,837 - +2.8 956,837 - -1.9 956,851 - -1.8 956,853 + +2.0 956,853 + +2.9 956,853 + -0.1 956,853 + -2.6 956,853 + +0.2 956,853 + -0.7 956,853 + +0.9 956,853 + -1.3 956,853 + -3.1 956,853 + -0.6 956,854 - -0.7 956,854 - -1.1 956,854 - +1.4 956,854 - -0.7 956,854 - +0.9 956,854 - -1.9 956,855 + -1.7 956,855 + +2.0 956,856 - +0.8 956,856 - -1.4 956,856 - +1.5 956,856 - +2.8 956,856 - -1.7 956,856 - +1.8 956,856 - -1.4 956,856 - +0.5 956,856 - -2.4 956,873 + -0.7 956,873 + -2.1 956,873 + -1.9 956,873 + -1.1 956,873 + -2.1 956,873 + -1.3 956,873 + +2.1 956,873 + -0.1 956,874 - +2.9 956,874 - +1.8 956,898 + -2.7 956,977 + -1.4 956,977 + -3.6 956,982 - -2.3 956,982 - +4.2 956,982 - +1.0 956,982 - -1.9 957,211 + DZA65_RS04580 0.43 -1.9 957,211 + DZA65_RS04580 0.43 -0.7 957,211 + DZA65_RS04580 0.43 -0.1 957,212 - DZA65_RS04580 0.43 -0.5 957,212 - DZA65_RS04580 0.43 -1.7 957,212 - DZA65_RS04580 0.43 +0.6 957,212 - DZA65_RS04580 0.43 +2.8 957,212 - DZA65_RS04580 0.43 -2.1 957,212 - DZA65_RS04580 0.43 +0.6 957,212 - DZA65_RS04580 0.43 -3.2 957,226 + DZA65_RS04580 0.45 -1.7 957,226 + DZA65_RS04580 0.45 +1.0 957,227 - -2.1 957,516 + DZA65_RS04580 0.87 -2.1 957,516 + DZA65_RS04580 0.87 +1.5 957,516 + DZA65_RS04580 0.87 +2.5 957,516 + DZA65_RS04580 0.87 -0.3 957,516 + DZA65_RS04580 0.87 -1.9 957,516 + DZA65_RS04580 0.87 +2.5 957,517 - DZA65_RS04580 0.87 -0.3 957,517 - DZA65_RS04580 0.87 +0.1 957,517 - DZA65_RS04580 0.87 -2.1 957,517 - DZA65_RS04580 0.87 -1.7 957,517 - DZA65_RS04580 0.87 -2.4 957,517 - DZA65_RS04580 0.87 -0.7 957,517 - DZA65_RS04580 0.87 +0.6 957,517 - DZA65_RS04580 0.87 -0.7 957,520 + DZA65_RS04580 0.88 -1.7 957,520 + DZA65_RS04580 0.88 -0.2 957,520 + DZA65_RS04580 0.88 -1.4 957,520 + DZA65_RS04580 0.88 -0.4 957,520 + DZA65_RS04580 0.88 +2.3 957,520 + DZA65_RS04580 0.88 +0.4 957,520 + DZA65_RS04580 0.88 -1.6 957,520 + DZA65_RS04580 0.88 -0.7 957,520 + DZA65_RS04580 0.88 -2.1 957,521 - DZA65_RS04580 0.88 -0.7 957,521 - DZA65_RS04580 0.88 +0.9 957,521 - DZA65_RS04580 0.88 -1.9 957,521 - DZA65_RS04580 0.88 -1.9 957,521 - DZA65_RS04580 0.88 +0.9 957,521 - DZA65_RS04580 0.88 +2.6 957,523 - DZA65_RS04580 0.88 +0.9 957,523 - DZA65_RS04580 0.88 +4.1 957,612 - +1.4 957,743 + DZA65_RS04585 0.12 -2.1 957,743 + DZA65_RS04585 0.12 -0.4 957,743 + DZA65_RS04585 0.12 +0.2 957,743 + DZA65_RS04585 0.12 -1.7 957,744 - DZA65_RS04585 0.12 -0.1 957,811 - DZA65_RS04585 0.18 -1.4 957,813 + DZA65_RS04585 0.18 -1.1 957,813 + DZA65_RS04585 0.18 +0.5 957,813 + DZA65_RS04585 0.18 -0.5 957,813 + DZA65_RS04585 0.18 -0.7 957,813 + DZA65_RS04585 0.18 -2.3 958,319 + DZA65_RS04585 0.61 -0.1 958,397 + DZA65_RS04585 0.68 -1.1 958,397 + DZA65_RS04585 0.68 -0.7 958,397 + DZA65_RS04585 0.68 +1.4 958,398 - DZA65_RS04585 0.68 +0.3 958,398 - DZA65_RS04585 0.68 +3.0 958,398 - DZA65_RS04585 0.68 -0.6 958,429 - DZA65_RS04585 0.70 -1.9 958,520 + DZA65_RS04585 0.78 +0.9 958,520 + DZA65_RS04585 0.78 -0.7 958,520 + DZA65_RS04585 0.78 -0.4 958,520 + DZA65_RS04585 0.78 -1.3 958,520 + DZA65_RS04585 0.78 -1.5 958,521 - DZA65_RS04585 0.78 -1.1 958,521 - DZA65_RS04585 0.78 -3.9 958,521 - DZA65_RS04585 0.78 +1.8 958,521 - DZA65_RS04585 0.78 -2.8 958,570 - DZA65_RS04585 0.82 -2.4 958,752 - -1.4 958,873 + -2.2 958,873 + -2.1 958,873 + -2.4 958,873 + -0.1 958,873 + +1.9 958,874 - +0.4 958,874 - +1.7 958,891 - -2.9 958,914 + -0.3 958,914 + -2.3 958,914 + -0.5 958,915 - -0.7 958,915 - -0.7 958,946 + +0.3 958,946 + -0.5 958,947 - +0.0 958,947 - -2.4 958,947 - -1.9 958,947 - -1.7 958,947 - -2.6 959,332 - DZA65_RS04590 0.37 -1.8 959,365 - DZA65_RS04590 0.40 -1.7 959,470 + DZA65_RS04590 0.49 -0.3 959,471 - DZA65_RS04590 0.49 -0.4 959,471 - DZA65_RS04590 0.49 -0.1 959,471 - DZA65_RS04590 0.49 +0.9 959,471 - DZA65_RS04590 0.49 -1.7 959,642 + DZA65_RS04590 0.64 +0.1
Or see this region's nucleotide sequence