Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03860 and DZA65_RS03865 are separated by 528 nucleotides DZA65_RS03865 and DZA65_RS03870 are separated by 85 nucleotides
DZA65_RS03860: DZA65_RS03860 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 818,030 to 819,961
_RS03860
DZA65_RS03865: DZA65_RS03865 - inositol 2-dehydrogenase, at 820,490 to 821,476
_RS03865
DZA65_RS03870: DZA65_RS03870 - sugar ABC transporter substrate-binding protein, at 821,562 to 822,500
_RS03870
Position (kb) 820
821
822 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 819.512 kb on + strand, within DZA65_RS03860 at 819.512 kb on + strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.565 kb on - strand, within DZA65_RS03860 at 819.728 kb on + strand, within DZA65_RS03860 at 819.933 kb on + strand at 819.933 kb on + strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.960 kb on - strand at 819.960 kb on - strand at 819.998 kb on + strand at 819.999 kb on - strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.067 kb on + strand at 820.067 kb on + strand at 820.068 kb on - strand at 820.110 kb on + strand at 820.111 kb on - strand at 820.134 kb on + strand at 820.134 kb on + strand at 820.171 kb on - strand at 820.174 kb on + strand at 820.174 kb on + strand at 820.228 kb on - strand at 820.228 kb on - strand at 820.244 kb on - strand at 820.247 kb on - strand at 820.259 kb on + strand at 820.260 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.327 kb on + strand at 820.327 kb on + strand at 820.338 kb on + strand at 820.338 kb on + strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.419 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.449 kb on - strand at 820.485 kb on + strand at 820.486 kb on - strand at 820.495 kb on + strand at 820.495 kb on + strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.625 kb on + strand, within DZA65_RS03865 at 820.625 kb on + strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.674 kb on + strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.856 kb on + strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.964 kb on + strand, within DZA65_RS03865 at 820.964 kb on + strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 820.965 kb on - strand, within DZA65_RS03865 at 821.032 kb on + strand, within DZA65_RS03865 at 821.032 kb on + strand, within DZA65_RS03865 at 821.079 kb on + strand, within DZA65_RS03865 at 821.080 kb on - strand, within DZA65_RS03865 at 821.080 kb on - strand, within DZA65_RS03865 at 821.333 kb on + strand, within DZA65_RS03865 at 821.420 kb on + strand at 821.421 kb on - strand at 821.421 kb on - strand at 821.421 kb on - strand at 821.421 kb on - strand at 821.479 kb on + strand at 821.479 kb on + strand at 821.479 kb on + strand at 821.480 kb on - strand at 821.480 kb on - strand at 821.480 kb on - strand at 821.480 kb on - strand at 821.480 kb on - strand at 821.483 kb on + strand at 821.483 kb on + strand at 821.483 kb on + strand at 821.483 kb on + strand at 821.483 kb on + strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.484 kb on - strand at 821.514 kb on + strand at 821.515 kb on - strand at 821.515 kb on - strand at 821.528 kb on + strand at 821.528 kb on + strand at 821.528 kb on + strand at 821.529 kb on - strand at 821.529 kb on - strand at 821.529 kb on - strand at 821.529 kb on - strand at 821.529 kb on - strand at 821.572 kb on + strand at 821.572 kb on + strand at 821.573 kb on - strand at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.097 kb on - strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 819,512 + DZA65_RS03860 0.77 -1.4 819,512 + DZA65_RS03860 0.77 +0.4 819,513 - DZA65_RS03860 0.77 -0.6 819,513 - DZA65_RS03860 0.77 +0.1 819,565 - DZA65_RS03860 0.79 +0.2 819,728 + DZA65_RS03860 0.88 -1.4 819,933 + -1.4 819,933 + -0.6 819,934 - -1.0 819,934 - +1.8 819,934 - +0.0 819,934 - +1.0 819,956 + -1.6 819,956 + -0.9 819,956 + -2.5 819,956 + -3.2 819,957 - -2.0 819,957 - +1.3 819,957 - +0.6 819,957 - -0.9 819,957 - -2.3 819,957 - -3.0 819,957 - -1.2 819,959 + -1.0 819,959 + -1.0 819,959 + +0.9 819,959 + -1.6 819,960 - +0.2 819,960 - +2.2 819,998 + +0.6 819,999 - +2.0 820,045 + -1.0 820,045 + -0.4 820,045 + -0.7 820,046 - +2.5 820,046 - -2.4 820,046 - +2.8 820,067 + -2.9 820,067 + +0.5 820,068 - +1.0 820,110 + -1.0 820,111 - -1.4 820,134 + -0.5 820,134 + +0.2 820,171 - +0.2 820,174 + +1.4 820,174 + -1.4 820,228 - +0.5 820,228 - +2.0 820,244 - -1.5 820,247 - +2.4 820,259 + -0.4 820,260 - -1.0 820,286 - +1.9 820,286 - +1.5 820,286 - -2.0 820,327 + -0.6 820,327 + +3.0 820,338 + +0.5 820,338 + -0.6 820,339 - -1.9 820,339 - +0.2 820,339 - -0.4 820,339 - -1.4 820,419 - -0.1 820,424 - +2.2 820,424 - +2.1 820,424 - -1.4 820,424 - -0.5 820,424 - -0.5 820,448 + +1.5 820,448 + +1.2 820,448 + -1.0 820,448 + -2.0 820,448 + +1.6 820,448 + -1.0 820,449 - -2.6 820,485 + +1.8 820,486 - -0.3 820,495 + +1.1 820,495 + -1.0 820,575 - -0.2 820,575 - -1.0 820,575 - -3.0 820,575 - -2.0 820,625 + DZA65_RS03865 0.14 +0.4 820,625 + DZA65_RS03865 0.14 -1.0 820,626 - DZA65_RS03865 0.14 -1.9 820,626 - DZA65_RS03865 0.14 -2.0 820,674 + DZA65_RS03865 0.19 -0.6 820,690 - DZA65_RS03865 0.20 -1.0 820,690 - DZA65_RS03865 0.20 +1.4 820,856 + DZA65_RS03865 0.37 +2.8 820,931 - DZA65_RS03865 0.45 +0.8 820,931 - DZA65_RS03865 0.45 -1.6 820,931 - DZA65_RS03865 0.45 -0.6 820,931 - DZA65_RS03865 0.45 +1.5 820,931 - DZA65_RS03865 0.45 +1.2 820,931 - DZA65_RS03865 0.45 -2.0 820,964 + DZA65_RS03865 0.48 -1.4 820,964 + DZA65_RS03865 0.48 -0.6 820,965 - DZA65_RS03865 0.48 +2.0 820,965 - DZA65_RS03865 0.48 +1.7 820,965 - DZA65_RS03865 0.48 +3.9 820,965 - DZA65_RS03865 0.48 +1.0 820,965 - DZA65_RS03865 0.48 -0.0 820,965 - DZA65_RS03865 0.48 -0.6 820,965 - DZA65_RS03865 0.48 -0.6 821,032 + DZA65_RS03865 0.55 -2.5 821,032 + DZA65_RS03865 0.55 -1.7 821,079 + DZA65_RS03865 0.60 -0.0 821,080 - DZA65_RS03865 0.60 -2.4 821,080 - DZA65_RS03865 0.60 +2.0 821,333 + DZA65_RS03865 0.85 -2.8 821,420 + +0.7 821,421 - -3.6 821,421 - +1.6 821,421 - +1.5 821,421 - -0.4 821,479 + -3.2 821,479 + +0.5 821,479 + -0.6 821,480 - -1.0 821,480 - -0.6 821,480 - +0.3 821,480 - -2.8 821,480 - -4.5 821,483 + +0.3 821,483 + -1.4 821,483 + -2.9 821,483 + -2.0 821,483 + +1.1 821,484 - +0.5 821,484 - +0.5 821,484 - -2.4 821,484 - -2.8 821,484 - -0.6 821,484 - -1.6 821,484 - -1.8 821,484 - -1.0 821,484 - -1.2 821,484 - +1.4 821,514 + -1.0 821,515 - +0.4 821,515 - +1.0 821,528 + +0.6 821,528 + +2.4 821,528 + +0.4 821,529 - -1.0 821,529 - +0.6 821,529 - -1.4 821,529 - -0.0 821,529 - +0.8 821,572 + -1.2 821,572 + -1.6 821,573 - -0.5 821,946 + DZA65_RS03870 0.41 -0.3 821,946 + DZA65_RS03870 0.41 -0.0 821,946 + DZA65_RS03870 0.41 -0.4 821,946 + DZA65_RS03870 0.41 -0.0 821,946 + DZA65_RS03870 0.41 +0.4 821,946 + DZA65_RS03870 0.41 -1.8 821,946 + DZA65_RS03870 0.41 -1.0 821,946 + DZA65_RS03870 0.41 -0.6 821,947 - DZA65_RS03870 0.41 +1.9 821,947 - DZA65_RS03870 0.41 -2.2 821,947 - DZA65_RS03870 0.41 -1.8 821,947 - DZA65_RS03870 0.41 -0.6 821,947 - DZA65_RS03870 0.41 -1.6 821,947 - DZA65_RS03870 0.41 -0.6 822,053 + DZA65_RS03870 0.52 -2.2 822,053 + DZA65_RS03870 0.52 +3.3 822,054 - DZA65_RS03870 0.52 -1.2 822,054 - DZA65_RS03870 0.52 -1.2 822,054 - DZA65_RS03870 0.52 -1.8 822,054 - DZA65_RS03870 0.52 +2.0 822,097 - DZA65_RS03870 0.57 +0.4 822,398 + DZA65_RS03870 0.89 -3.0 822,398 + DZA65_RS03870 0.89 -1.4 822,398 + DZA65_RS03870 0.89 +2.5 822,399 - DZA65_RS03870 0.89 -0.9 822,399 - DZA65_RS03870 0.89 -0.6
Or see this region's nucleotide sequence