Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03480 and DZA65_RS03485 are separated by 262 nucleotides DZA65_RS03485 and DZA65_RS03490 are separated by 89 nucleotides DZA65_RS03490 and DZA65_RS03495 are separated by 23 nucleotides
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
DZA65_RS03490: DZA65_RS03490 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 736,996 to 737,712
_RS03490
DZA65_RS03495: DZA65_RS03495 - single-stranded-DNA-specific exonuclease RecJ, at 737,736 to 739,466
_RS03495
Position (kb) 736
737 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 735.091 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.257 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.392 kb on + strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.393 kb on - strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.415 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.432 kb on + strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.433 kb on - strand, within DZA65_RS03480 at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.620 kb on + strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.621 kb on - strand at 735.626 kb on + strand at 735.692 kb on - strand at 735.720 kb on + strand at 735.720 kb on + strand at 735.744 kb on + strand at 735.744 kb on + strand at 735.745 kb on - strand at 735.745 kb on - strand at 735.762 kb on + strand at 735.763 kb on - strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.782 kb on + strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.783 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.789 kb on - strand at 735.867 kb on - strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.874 kb on + strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.875 kb on - strand at 735.876 kb on + strand at 735.939 kb on + strand at 735.940 kb on - strand at 735.950 kb on + strand at 735.951 kb on - strand at 735.951 kb on - strand at 735.964 kb on + strand at 735.964 kb on + strand at 735.965 kb on - strand at 735.965 kb on - strand at 736.081 kb on + strand at 736.584 kb on - strand, within DZA65_RS03485 at 736.981 kb on + strand at 736.981 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.012 kb on + strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.213 kb on - strand, within DZA65_RS03490 at 737.253 kb on + strand, within DZA65_RS03490 at 737.254 kb on - strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.382 kb on - strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.547 kb on + strand, within DZA65_RS03490 at 737.548 kb on - strand, within DZA65_RS03490 at 737.710 kb on + strand at 737.727 kb on + strand at 737.786 kb on - strand at 737.820 kb on + strand at 737.821 kb on - strand at 737.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 735,091 + DZA65_RS03480 0.51 -1.6 735,101 + DZA65_RS03480 0.51 -1.8 735,101 + DZA65_RS03480 0.51 -1.6 735,101 + DZA65_RS03480 0.51 +0.6 735,102 - DZA65_RS03480 0.52 +1.1 735,102 - DZA65_RS03480 0.52 +0.2 735,257 + DZA65_RS03480 0.63 -0.6 735,392 + DZA65_RS03480 0.73 -0.6 735,392 + DZA65_RS03480 0.73 -0.7 735,392 + DZA65_RS03480 0.73 +2.0 735,393 - DZA65_RS03480 0.73 +4.0 735,393 - DZA65_RS03480 0.73 -3.2 735,415 + DZA65_RS03480 0.75 +0.9 735,415 + DZA65_RS03480 0.75 +1.4 735,415 + DZA65_RS03480 0.75 -3.2 735,415 + DZA65_RS03480 0.75 -0.6 735,432 + DZA65_RS03480 0.76 +1.0 735,432 + DZA65_RS03480 0.76 +1.8 735,433 - DZA65_RS03480 0.76 +0.8 735,433 - DZA65_RS03480 0.76 -2.3 735,433 - DZA65_RS03480 0.76 -1.8 735,620 + -2.2 735,620 + +0.0 735,620 + -2.5 735,620 + -0.3 735,620 + -1.3 735,620 + -2.6 735,620 + -2.3 735,620 + +0.0 735,620 + -2.0 735,620 + -1.1 735,620 + -1.0 735,620 + +1.5 735,620 + -1.6 735,620 + -1.3 735,620 + -1.6 735,620 + -0.6 735,621 - +1.4 735,621 - -0.6 735,621 - +2.5 735,621 - +2.3 735,621 - -2.0 735,621 - -0.3 735,621 - +3.1 735,621 - -2.2 735,621 - -0.6 735,621 - +0.1 735,621 - +2.6 735,621 - +1.6 735,621 - -1.0 735,626 + +3.0 735,692 - -0.6 735,720 + +1.9 735,720 + +0.6 735,744 + +2.0 735,744 + -0.1 735,745 - -1.3 735,745 - -0.3 735,762 + -0.6 735,763 - +1.3 735,782 + +0.8 735,782 + -1.8 735,782 + -0.6 735,782 + -2.3 735,782 + +1.0 735,782 + -0.6 735,782 + -5.5 735,782 + +0.3 735,782 + -1.3 735,782 + +2.3 735,782 + -1.8 735,782 + +0.8 735,782 + -1.0 735,783 - -1.3 735,783 - -2.3 735,783 - +3.2 735,783 - +1.0 735,783 - +1.9 735,783 - +0.0 735,783 - -0.8 735,783 - -1.3 735,783 - +0.7 735,783 - -1.5 735,789 - -0.2 735,789 - +2.4 735,789 - +1.6 735,789 - -1.0 735,867 - +0.0 735,874 + -1.0 735,874 + +3.0 735,874 + -1.3 735,874 + +1.9 735,874 + +0.8 735,875 - -0.6 735,875 - +1.3 735,875 - -1.3 735,876 + -2.3 735,939 + -2.5 735,940 - +1.4 735,950 + +1.0 735,951 - -0.0 735,951 - +2.5 735,964 + -2.3 735,964 + +0.2 735,965 - +0.0 735,965 - +1.2 736,081 + +0.3 736,584 - DZA65_RS03485 0.64 -0.6 736,981 + +0.0 736,981 + +2.6 736,989 + -1.3 736,989 + -3.5 736,989 + +2.6 736,989 + -1.0 737,009 + +1.3 737,009 + +0.0 737,009 + +0.0 737,010 - -0.3 737,010 - -0.6 737,010 - -1.0 737,010 - -2.9 737,010 - -1.6 737,010 - +2.3 737,012 + -1.0 737,013 - -3.3 737,013 - +1.0 737,013 - +0.0 737,170 + DZA65_RS03490 0.24 -2.2 737,170 + DZA65_RS03490 0.24 -0.6 737,170 + DZA65_RS03490 0.24 -1.3 737,170 + DZA65_RS03490 0.24 +2.0 737,170 + DZA65_RS03490 0.24 -0.6 737,170 + DZA65_RS03490 0.24 -0.6 737,170 + DZA65_RS03490 0.24 +1.0 737,170 + DZA65_RS03490 0.24 +2.0 737,170 + DZA65_RS03490 0.24 -1.3 737,170 + DZA65_RS03490 0.24 +1.1 737,171 - DZA65_RS03490 0.24 -1.0 737,171 - DZA65_RS03490 0.24 -2.2 737,171 - DZA65_RS03490 0.24 +1.4 737,171 - DZA65_RS03490 0.24 -1.8 737,212 + DZA65_RS03490 0.30 +1.0 737,212 + DZA65_RS03490 0.30 -0.2 737,212 + DZA65_RS03490 0.30 +1.2 737,212 + DZA65_RS03490 0.30 +0.8 737,213 - DZA65_RS03490 0.30 +0.2 737,253 + DZA65_RS03490 0.36 +5.8 737,254 - DZA65_RS03490 0.36 +0.0 737,381 + DZA65_RS03490 0.54 +2.0 737,381 + DZA65_RS03490 0.54 -2.0 737,381 + DZA65_RS03490 0.54 +2.2 737,381 + DZA65_RS03490 0.54 +0.0 737,382 - DZA65_RS03490 0.54 +1.5 737,389 + DZA65_RS03490 0.55 -1.5 737,389 + DZA65_RS03490 0.55 +0.4 737,389 + DZA65_RS03490 0.55 -0.6 737,389 + DZA65_RS03490 0.55 -3.0 737,389 + DZA65_RS03490 0.55 +0.2 737,390 - DZA65_RS03490 0.55 -0.6 737,390 - DZA65_RS03490 0.55 -2.2 737,390 - DZA65_RS03490 0.55 +2.6 737,391 + DZA65_RS03490 0.55 -1.3 737,391 + DZA65_RS03490 0.55 +0.5 737,391 + DZA65_RS03490 0.55 -1.0 737,392 - DZA65_RS03490 0.55 -1.6 737,392 - DZA65_RS03490 0.55 -1.3 737,392 - DZA65_RS03490 0.55 +2.0 737,392 - DZA65_RS03490 0.55 -1.7 737,392 - DZA65_RS03490 0.55 +0.0 737,392 - DZA65_RS03490 0.55 +2.1 737,425 + DZA65_RS03490 0.60 +0.5 737,425 + DZA65_RS03490 0.60 -1.0 737,547 + DZA65_RS03490 0.77 -0.7 737,548 - DZA65_RS03490 0.77 -2.7 737,710 + -0.5 737,727 + -1.7 737,786 - +0.0 737,820 + -1.2 737,821 - +1.9 737,836 + -2.5
Or see this region's nucleotide sequence