Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02460 and DZA65_RS02465 are separated by 234 nucleotides DZA65_RS02465 and DZA65_RS02475 are separated by 338 nucleotides DZA65_RS02475 and DZA65_RS02480 are separated by 13 nucleotides
DZA65_RS02460: DZA65_RS02460 - YecA family protein, at 530,854 to 531,438
_RS02460
DZA65_RS02465: DZA65_RS02465 - cell division protein ZapA, at 531,673 to 532,002
_RS02465
DZA65_RS02475: DZA65_RS02475 - 5-formyltetrahydrofolate cyclo-ligase, at 532,341 to 532,955
_RS02475
DZA65_RS02480: DZA65_RS02480 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 532,969 to 534,225
_RS02480
Position (kb) 532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 531.392 kb on - strand at 531.392 kb on - strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.424 kb on - strand at 531.424 kb on - strand at 531.430 kb on + strand at 531.431 kb on - strand at 531.431 kb on - strand at 531.432 kb on + strand at 531.432 kb on + strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.478 kb on - strand at 531.478 kb on - strand at 531.496 kb on + strand at 531.497 kb on - strand at 531.499 kb on - strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.543 kb on + strand at 531.543 kb on + strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.568 kb on + strand at 531.568 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.580 kb on - strand at 531.580 kb on - strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.774 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.969 kb on + strand, within DZA65_RS02465 at 531.970 kb on - strand at 531.970 kb on - strand at 531.973 kb on - strand at 532.001 kb on - strand at 532.001 kb on - strand at 532.024 kb on + strand at 532.025 kb on - strand at 532.025 kb on - strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.062 kb on + strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.063 kb on - strand at 532.128 kb on + strand at 532.129 kb on - strand at 532.148 kb on - strand at 532.157 kb on + strand at 532.158 kb on - strand at 532.194 kb on - strand at 532.239 kb on - strand at 532.239 kb on - strand at 532.277 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.310 kb on + strand at 532.311 kb on - strand at 532.311 kb on - strand at 532.311 kb on - strand at 532.319 kb on - strand at 532.387 kb on + strand at 532.388 kb on - strand at 532.596 kb on + strand, within DZA65_RS02475 at 532.596 kb on + strand, within DZA65_RS02475 at 532.596 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.642 kb on + strand, within DZA65_RS02475 at 532.643 kb on - strand, within DZA65_RS02475 at 532.807 kb on - strand, within DZA65_RS02475 at 532.807 kb on - strand, within DZA65_RS02475 at 532.958 kb on + strand at 532.958 kb on + strand at 532.971 kb on - strand at 533.054 kb on + strand at 533.054 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.078 kb on + strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.079 kb on - strand at 533.083 kb on + strand at 533.083 kb on + strand at 533.084 kb on - strand at 533.084 kb on - strand at 533.084 kb on - strand at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.103 kb on + strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.104 kb on - strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.109 kb on + strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.110 kb on - strand, within DZA65_RS02480 at 533.262 kb on - strand, within DZA65_RS02480 at 533.426 kb on + strand at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.467 kb on - strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.574 kb on - strand, within DZA65_RS02480 at 533.616 kb on + strand at 533.616 kb on + strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.669 kb on + strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.699 kb on + strand, within DZA65_RS02480 at 533.700 kb on - strand, within DZA65_RS02480 at 533.829 kb on - strand, within DZA65_RS02480 at 533.905 kb on + strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.953 kb on + strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 531,392 - +0.8 531,392 - +0.5 531,423 + -2.1 531,423 + +0.1 531,423 + -1.7 531,423 + +1.1 531,423 + -2.6 531,424 - +2.6 531,424 - +0.0 531,430 + -0.5 531,431 - +0.2 531,431 - -3.1 531,432 + -1.5 531,432 + -0.9 531,433 - +0.6 531,433 - +0.2 531,433 - -1.9 531,433 - +1.6 531,473 - -0.5 531,473 - -0.5 531,473 - +0.1 531,478 - -2.2 531,478 - -2.5 531,496 + +0.9 531,497 - -0.5 531,499 - +0.1 531,536 + -1.5 531,536 + +0.7 531,536 + +1.0 531,536 + -1.6 531,536 + +1.2 531,536 + -0.7 531,536 + -1.9 531,536 + -0.2 531,536 + +0.7 531,536 + -1.2 531,537 - +1.1 531,537 - +1.8 531,537 - +1.1 531,537 - -0.9 531,537 - +0.9 531,537 - +0.3 531,537 - -0.8 531,537 - -0.9 531,543 + -0.9 531,543 + -1.4 531,544 - +0.1 531,544 - -0.6 531,544 - -0.8 531,544 - -1.7 531,544 - -2.1 531,546 + -3.7 531,546 + +1.6 531,546 + +1.2 531,547 - -2.5 531,547 - +0.5 531,547 - -0.5 531,547 - -0.9 531,552 + -0.9 531,552 + +0.9 531,552 + +1.9 531,552 + -1.2 531,553 - -0.5 531,553 - -0.9 531,553 - -0.7 531,553 - -2.7 531,554 + -0.9 531,554 + -1.7 531,554 + -1.9 531,554 + +1.8 531,554 + -0.9 531,554 + +0.9 531,554 + -0.1 531,554 + -0.9 531,554 + -0.5 531,554 + +2.9 531,554 + +1.2 531,554 + +0.7 531,554 + +0.2 531,554 + -2.2 531,554 + +2.9 531,555 - -1.2 531,555 - -0.9 531,555 - -1.7 531,555 - +1.2 531,555 - -1.2 531,555 - +2.6 531,555 - -3.2 531,555 - -0.9 531,555 - -2.5 531,555 - +1.7 531,555 - +0.1 531,555 - +1.3 531,555 - +3.0 531,555 - -2.7 531,568 + -0.1 531,568 + +0.9 531,579 + -1.7 531,579 + +3.2 531,579 + -1.5 531,579 + -1.2 531,580 - -0.5 531,580 - -0.9 531,581 + -0.5 531,581 + +2.2 531,581 + +1.1 531,581 + -2.4 531,581 + -2.2 531,581 + -0.5 531,581 + -1.5 531,581 + -2.4 531,581 + +1.1 531,581 + +0.1 531,581 + -0.9 531,583 + -0.5 531,583 + +0.1 531,583 + -0.9 531,583 + +0.1 531,774 + DZA65_RS02465 0.31 -1.1 531,969 + DZA65_RS02465 0.90 +0.1 531,969 + DZA65_RS02465 0.90 -0.4 531,969 + DZA65_RS02465 0.90 -0.5 531,970 - -0.9 531,970 - +0.2 531,973 - +2.5 532,001 - +1.2 532,001 - +3.0 532,024 + -2.5 532,025 - +1.1 532,025 - -0.9 532,062 + -0.6 532,062 + -3.9 532,062 + +3.8 532,062 + +1.6 532,063 - -0.9 532,063 - -0.9 532,063 - -1.2 532,063 - -2.8 532,063 - -1.2 532,063 - +0.9 532,063 - -2.7 532,063 - -2.4 532,128 + -2.7 532,129 - -3.5 532,148 - +1.1 532,157 + +1.2 532,158 - -1.2 532,194 - -1.8 532,239 - -2.0 532,239 - -0.5 532,277 + -0.9 532,297 + +0.2 532,297 + -0.2 532,297 + +0.7 532,297 + -0.1 532,297 + +0.6 532,310 + -0.9 532,311 - +0.1 532,311 - +0.5 532,311 - -2.5 532,319 - -1.2 532,387 + -0.9 532,388 - +0.6 532,596 + DZA65_RS02475 0.41 -0.0 532,596 + DZA65_RS02475 0.41 -2.1 532,596 + DZA65_RS02475 0.41 -0.3 532,642 + DZA65_RS02475 0.49 +0.3 532,642 + DZA65_RS02475 0.49 +2.9 532,642 + DZA65_RS02475 0.49 -1.3 532,643 - DZA65_RS02475 0.49 -2.1 532,807 - DZA65_RS02475 0.76 -0.4 532,807 - DZA65_RS02475 0.76 +0.8 532,958 + -0.5 532,958 + -1.4 532,971 - +0.5 533,054 + +0.1 533,054 + +0.9 533,078 + -0.3 533,078 + -0.3 533,078 + +0.4 533,078 + -3.4 533,078 + -2.7 533,079 - -2.6 533,079 - -2.4 533,079 - +3.3 533,079 - -1.3 533,079 - -2.4 533,083 + +0.3 533,083 + -0.5 533,084 - +1.0 533,084 - -1.6 533,084 - -0.2 533,103 + DZA65_RS02480 0.11 -2.4 533,103 + DZA65_RS02480 0.11 -2.7 533,103 + DZA65_RS02480 0.11 +1.1 533,103 + DZA65_RS02480 0.11 -1.2 533,104 - DZA65_RS02480 0.11 +0.1 533,104 - DZA65_RS02480 0.11 +0.1 533,104 - DZA65_RS02480 0.11 +0.3 533,104 - DZA65_RS02480 0.11 -0.9 533,104 - DZA65_RS02480 0.11 -0.4 533,104 - DZA65_RS02480 0.11 -0.9 533,109 + DZA65_RS02480 0.11 +2.2 533,109 + DZA65_RS02480 0.11 +2.4 533,109 + DZA65_RS02480 0.11 -1.5 533,109 + DZA65_RS02480 0.11 -1.5 533,109 + DZA65_RS02480 0.11 +1.1 533,110 - DZA65_RS02480 0.11 +1.7 533,110 - DZA65_RS02480 0.11 +1.9 533,110 - DZA65_RS02480 0.11 +1.1 533,110 - DZA65_RS02480 0.11 +0.4 533,110 - DZA65_RS02480 0.11 -1.2 533,110 - DZA65_RS02480 0.11 +0.4 533,110 - DZA65_RS02480 0.11 -1.5 533,262 - DZA65_RS02480 0.23 -1.9 533,426 + -2.1 533,426 + DZA65_RS02480 0.36 -1.2 533,426 + DZA65_RS02480 0.36 -1.4 533,426 + DZA65_RS02480 0.36 -2.4 533,426 + DZA65_RS02480 0.36 -1.2 533,426 + DZA65_RS02480 0.36 +0.7 533,427 - DZA65_RS02480 0.36 -0.1 533,427 - DZA65_RS02480 0.36 -2.1 533,427 - DZA65_RS02480 0.36 +1.6 533,427 - DZA65_RS02480 0.36 -0.7 533,439 - DZA65_RS02480 0.37 +1.1 533,439 - DZA65_RS02480 0.37 +0.7 533,467 - DZA65_RS02480 0.40 -1.0 533,562 + DZA65_RS02480 0.47 -2.6 533,562 + DZA65_RS02480 0.47 +2.9 533,562 + DZA65_RS02480 0.47 +0.6 533,562 + DZA65_RS02480 0.47 -1.2 533,562 + DZA65_RS02480 0.47 -0.2 533,562 + DZA65_RS02480 0.47 +2.0 533,562 + DZA65_RS02480 0.47 +0.7 533,562 + DZA65_RS02480 0.47 +2.8 533,562 + DZA65_RS02480 0.47 -0.5 533,563 - DZA65_RS02480 0.47 -1.7 533,563 - +3.8 533,563 - DZA65_RS02480 0.47 +0.1 533,563 - DZA65_RS02480 0.47 -1.5 533,563 - DZA65_RS02480 0.47 +2.3 533,563 - DZA65_RS02480 0.47 -1.7 533,563 - DZA65_RS02480 0.47 +0.9 533,563 - DZA65_RS02480 0.47 +0.9 533,563 - DZA65_RS02480 0.47 -2.2 533,563 - DZA65_RS02480 0.47 +2.3 533,564 + DZA65_RS02480 0.47 -0.6 533,564 + DZA65_RS02480 0.47 +0.7 533,564 + DZA65_RS02480 0.47 -1.2 533,564 + DZA65_RS02480 0.47 -0.1 533,564 + DZA65_RS02480 0.47 -2.6 533,564 + DZA65_RS02480 0.47 -1.9 533,565 - DZA65_RS02480 0.47 -1.7 533,565 - DZA65_RS02480 0.47 +0.2 533,565 - DZA65_RS02480 0.47 +4.4 533,565 - DZA65_RS02480 0.47 -2.6 533,565 - DZA65_RS02480 0.47 +1.1 533,565 - DZA65_RS02480 0.47 -2.6 533,565 - DZA65_RS02480 0.47 +3.8 533,565 - DZA65_RS02480 0.47 +0.9 533,574 - DZA65_RS02480 0.48 -0.2 533,616 + -2.4 533,616 + DZA65_RS02480 0.51 -1.2 533,617 - DZA65_RS02480 0.52 -2.1 533,617 - DZA65_RS02480 0.52 +1.8 533,617 - DZA65_RS02480 0.52 +0.4 533,669 + DZA65_RS02480 0.56 +1.1 533,670 - DZA65_RS02480 0.56 +0.6 533,670 - DZA65_RS02480 0.56 +0.2 533,670 - DZA65_RS02480 0.56 +0.5 533,670 - DZA65_RS02480 0.56 +0.1 533,699 + DZA65_RS02480 0.58 -3.5 533,700 - DZA65_RS02480 0.58 -3.2 533,829 - DZA65_RS02480 0.68 -0.9 533,905 + DZA65_RS02480 0.74 +0.3 533,906 - DZA65_RS02480 0.75 -0.5 533,906 - DZA65_RS02480 0.75 -1.9 533,953 + DZA65_RS02480 0.78 -0.9 533,954 - DZA65_RS02480 0.78 +1.1 533,954 - DZA65_RS02480 0.78 -0.2
Or see this region's nucleotide sequence