Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00590 and DZA65_RS00595 overlap by 1 nucleotides DZA65_RS00595 and DZA65_RS00600 overlap by 4 nucleotides DZA65_RS00600 and DZA65_RS00605 are separated by 0 nucleotides
DZA65_RS00590: DZA65_RS00590 - ABC transporter substrate-binding protein, at 136,707 to 138,302
_RS00590
DZA65_RS00595: DZA65_RS00595 - ABC transporter permease, at 138,302 to 139,312
_RS00595
DZA65_RS00600: DZA65_RS00600 - ABC transporter permease, at 139,309 to 140,211
_RS00600
DZA65_RS00605: DZA65_RS00605 - ABC transporter ATP-binding protein, at 140,212 to 141,039
_RS00605
Position (kb) 138
139
140 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 137.344 kb on + strand, within DZA65_RS00590 at 137.344 kb on + strand, within DZA65_RS00590 at 137.411 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.985 kb on + strand, within DZA65_RS00590 at 137.986 kb on - strand, within DZA65_RS00590 at 138.153 kb on + strand at 138.153 kb on + strand at 138.154 kb on - strand at 138.154 kb on - strand at 138.262 kb on + strand at 138.262 kb on + strand at 138.279 kb on + strand at 138.279 kb on + strand at 138.309 kb on + strand at 138.310 kb on - strand at 138.328 kb on + strand at 138.329 kb on - strand at 138.501 kb on - strand, within DZA65_RS00595 at 138.501 kb on - strand, within DZA65_RS00595 at 138.509 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.710 kb on - strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.885 kb on - strand, within DZA65_RS00595 at 138.936 kb on + strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.976 kb on + strand, within DZA65_RS00595 at 139.112 kb on + strand, within DZA65_RS00595 at 139.113 kb on - strand, within DZA65_RS00595 at 139.178 kb on + strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.187 kb on - strand, within DZA65_RS00595 at 139.228 kb on + strand at 139.228 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.283 kb on + strand at 139.283 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.493 kb on - strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.611 kb on + strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.887 kb on + strand, within DZA65_RS00600 at 140.209 kb on + strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 137,344 + DZA65_RS00590 0.40 +0.4 137,344 + DZA65_RS00590 0.40 +1.7 137,411 + DZA65_RS00590 0.44 +1.6 137,479 + DZA65_RS00590 0.48 +2.1 137,479 + DZA65_RS00590 0.48 +0.3 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -0.3 137,479 + DZA65_RS00590 0.48 -0.4 137,479 + DZA65_RS00590 0.48 -1.6 137,479 + +2.1 137,479 + DZA65_RS00590 0.48 +1.6 137,479 + DZA65_RS00590 0.48 -2.1 137,479 + DZA65_RS00590 0.48 -0.3 137,479 + DZA65_RS00590 0.48 -0.1 137,479 + DZA65_RS00590 0.48 +2.5 137,479 + DZA65_RS00590 0.48 +2.8 137,479 + DZA65_RS00590 0.48 -1.6 137,479 + DZA65_RS00590 0.48 +2.3 137,479 + DZA65_RS00590 0.48 +1.0 137,479 + DZA65_RS00590 0.48 -2.3 137,479 + DZA65_RS00590 0.48 -0.2 137,479 + DZA65_RS00590 0.48 +0.5 137,479 + DZA65_RS00590 0.48 +1.1 137,479 + DZA65_RS00590 0.48 +1.9 137,479 + DZA65_RS00590 0.48 +2.4 137,479 + DZA65_RS00590 0.48 +1.1 137,480 - DZA65_RS00590 0.48 -3.7 137,480 - DZA65_RS00590 0.48 +1.8 137,480 - DZA65_RS00590 0.48 +3.8 137,480 - DZA65_RS00590 0.48 +0.3 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 +1.9 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 -1.2 137,480 - DZA65_RS00590 0.48 -0.1 137,480 - DZA65_RS00590 0.48 +0.0 137,480 - DZA65_RS00590 0.48 +0.0 137,480 - DZA65_RS00590 0.48 +1.0 137,480 - DZA65_RS00590 0.48 +2.0 137,480 - DZA65_RS00590 0.48 -1.1 137,480 - DZA65_RS00590 0.48 -1.1 137,480 - DZA65_RS00590 0.48 +1.3 137,480 - DZA65_RS00590 0.48 +1.0 137,480 - DZA65_RS00590 0.48 +0.3 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 -1.7 137,538 + DZA65_RS00590 0.52 +0.1 137,538 + DZA65_RS00590 0.52 -0.7 137,538 + DZA65_RS00590 0.52 -0.4 137,538 + DZA65_RS00590 0.52 -0.5 137,539 - DZA65_RS00590 0.52 -0.3 137,539 - DZA65_RS00590 0.52 +0.7 137,630 + DZA65_RS00590 0.58 +1.7 137,630 + DZA65_RS00590 0.58 -3.3 137,630 + DZA65_RS00590 0.58 -1.1 137,826 + DZA65_RS00590 0.70 -2.9 137,826 + DZA65_RS00590 0.70 +1.3 137,826 + DZA65_RS00590 0.70 -1.7 137,827 - DZA65_RS00590 0.70 -1.6 137,827 - DZA65_RS00590 0.70 -1.1 137,985 + DZA65_RS00590 0.80 +0.5 137,986 - DZA65_RS00590 0.80 -0.7 138,153 + -4.1 138,153 + -2.2 138,154 - -1.2 138,154 - +0.8 138,262 + -0.3 138,262 + -1.1 138,279 + -3.2 138,279 + +1.3 138,309 + +2.3 138,310 - +1.3 138,328 + +3.4 138,329 - -2.3 138,501 - DZA65_RS00595 0.20 +1.3 138,501 - DZA65_RS00595 0.20 +0.7 138,509 + DZA65_RS00595 0.20 -1.9 138,587 + DZA65_RS00595 0.28 -0.5 138,587 + DZA65_RS00595 0.28 -0.7 138,587 + DZA65_RS00595 0.28 -1.6 138,588 - DZA65_RS00595 0.28 -0.4 138,588 - DZA65_RS00595 0.28 -1.9 138,709 + DZA65_RS00595 0.40 +1.6 138,709 + DZA65_RS00595 0.40 -0.2 138,709 + DZA65_RS00595 0.40 -1.9 138,710 - DZA65_RS00595 0.40 +1.6 138,884 + DZA65_RS00595 0.58 -0.3 138,884 + DZA65_RS00595 0.58 -1.1 138,885 - DZA65_RS00595 0.58 +2.5 138,936 + DZA65_RS00595 0.63 +0.3 138,937 - DZA65_RS00595 0.63 -2.9 138,937 - DZA65_RS00595 0.63 -1.6 138,941 + DZA65_RS00595 0.63 -1.6 138,941 + DZA65_RS00595 0.63 +1.3 138,941 + DZA65_RS00595 0.63 -1.3 138,941 + DZA65_RS00595 0.63 +1.6 138,941 + DZA65_RS00595 0.63 +0.3 138,942 - DZA65_RS00595 0.63 -0.7 138,942 - DZA65_RS00595 0.63 -2.3 138,942 - DZA65_RS00595 0.63 -0.3 138,956 + DZA65_RS00595 0.65 +1.9 138,956 + DZA65_RS00595 0.65 -1.7 138,956 + DZA65_RS00595 0.65 +1.1 138,956 + DZA65_RS00595 0.65 -2.3 138,956 + DZA65_RS00595 0.65 +0.7 138,956 + DZA65_RS00595 0.65 -2.4 138,956 + DZA65_RS00595 0.65 -1.1 138,956 + DZA65_RS00595 0.65 +3.4 138,956 + DZA65_RS00595 0.65 -2.0 138,956 + DZA65_RS00595 0.65 +0.3 138,957 - DZA65_RS00595 0.65 -2.3 138,957 - DZA65_RS00595 0.65 -1.1 138,957 - DZA65_RS00595 0.65 +1.8 138,957 - DZA65_RS00595 0.65 -3.5 138,957 - DZA65_RS00595 0.65 -1.1 138,957 - DZA65_RS00595 0.65 +2.2 138,957 - DZA65_RS00595 0.65 -0.8 138,957 - DZA65_RS00595 0.65 +2.3 138,976 + DZA65_RS00595 0.67 -2.2 139,112 + DZA65_RS00595 0.80 -1.1 139,113 - DZA65_RS00595 0.80 -2.1 139,178 + DZA65_RS00595 0.87 -1.1 139,179 - DZA65_RS00595 0.87 -1.6 139,179 - DZA65_RS00595 0.87 -3.2 139,179 - DZA65_RS00595 0.87 +0.7 139,187 - DZA65_RS00595 0.88 +0.3 139,228 + +1.3 139,228 + +1.8 139,250 + -1.7 139,250 + -1.1 139,250 + -2.3 139,250 + -0.7 139,250 + +0.7 139,250 + -2.9 139,250 + -0.9 139,251 - -1.2 139,251 - +0.3 139,251 - +1.3 139,251 - -0.1 139,251 - -1.1 139,251 - -0.3 139,251 - -0.9 139,251 - +0.3 139,251 - -2.1 139,283 + -2.4 139,283 + +1.2 139,318 + -2.1 139,318 + +1.9 139,318 + +1.3 139,318 + -0.1 139,318 + -2.1 139,318 + +0.8 139,318 + -0.0 139,318 + +0.3 139,318 + -1.9 139,319 - -0.7 139,319 - +2.3 139,319 - +1.6 139,319 - -0.7 139,319 - +1.3 139,319 - -2.6 139,319 - -2.6 139,319 - -0.7 139,319 - -1.7 139,319 - +1.3 139,493 - DZA65_RS00600 0.20 -1.6 139,608 + DZA65_RS00600 0.33 -0.1 139,608 + DZA65_RS00600 0.33 +1.3 139,608 + DZA65_RS00600 0.33 -1.1 139,608 + DZA65_RS00600 0.33 -1.3 139,609 - DZA65_RS00600 0.33 -1.6 139,609 - DZA65_RS00600 0.33 +1.3 139,609 - DZA65_RS00600 0.33 -0.6 139,611 + DZA65_RS00600 0.33 -1.2 139,612 - DZA65_RS00600 0.34 -1.7 139,612 - DZA65_RS00600 0.34 +1.3 139,612 - DZA65_RS00600 0.34 -0.6 139,612 - DZA65_RS00600 0.34 -2.1 139,612 - DZA65_RS00600 0.34 +1.3 139,612 - DZA65_RS00600 0.34 +1.3 139,612 - DZA65_RS00600 0.34 -2.0 139,612 - DZA65_RS00600 0.34 -2.2 139,612 - DZA65_RS00600 0.34 +0.9 139,612 - DZA65_RS00600 0.34 +2.3 139,705 - DZA65_RS00600 0.44 -0.7 139,705 - DZA65_RS00600 0.44 -1.1 139,887 + DZA65_RS00600 0.64 +2.0 140,209 + +2.8 140,209 + +1.2 140,210 - -2.3 140,210 - -0.7
Or see this region's nucleotide sequence