Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS23000

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,804,969	+		DZA65_RS22210	0.51	-0.7
4,804,970	-		DZA65_RS22210	0.51	-0.7
4,805,047	-		DZA65_RS22210	0.57	-0.7
4,805,072	+		DZA65_RS22210	0.59	+0.1
4,805,073	-		DZA65_RS22210	0.59	-0.4
4,805,073	-		DZA65_RS22210	0.59	-3.4
4,805,155	+		DZA65_RS22210	0.64	-1.5
4,805,155	+		DZA65_RS22210	0.64	-1.7
4,805,198	+		DZA65_RS22210	0.67	-0.9
4,805,218	-		DZA65_RS22210	0.69	-1.5
4,805,333	+		DZA65_RS22210	0.77	-1.1
4,805,333	+		DZA65_RS22210	0.77	-0.4
4,805,618	+				+0.1
4,805,618	+				-0.5
4,805,776	+				-1.1
4,805,776	+				-0.1
4,805,776	+				+2.2
4,805,776	+				+0.2
4,805,802	-				-1.2
4,805,817	+				-0.6
4,805,817	+				+0.6
4,805,817	+				+2.2
4,805,818	-				+0.1
4,805,818	-				+2.9
4,805,818	-				+1.8
4,805,818	-				+1.3
4,805,818	-				+1.6
4,805,818	-				+0.1
4,805,818	-				-0.7
4,805,818	-				-0.4
4,805,818	-				+1.6
4,805,826	+				-0.7
4,805,826	+				-0.3
4,805,826	+				+1.6
4,805,826	+				-0.3
4,805,826	+				-0.8
4,805,827	-				-1.2
4,805,827	-				+1.2
4,805,828	+				-0.7
4,805,828	+				+1.6
4,805,828	+				-1.4
4,805,828	+				-0.9
4,805,828	+				-2.7
4,805,828	+				-1.7
4,805,828	+				+0.1
4,805,828	+				+0.5
4,805,828	+				-2.6
4,805,828	+				-1.2
4,805,828	+				+2.6
4,805,828	+				+2.1
4,805,828	+				+1.5
4,805,828	+				-0.2
4,805,828	+				+0.1
4,805,828	+				-1.2
4,805,828	+				+0.6
4,805,828	+				+0.1
4,805,828	+				-0.7
4,805,828	+				+0.3
4,805,828	+				-0.4
4,805,828	+				-0.4
4,805,828	+				-0.4
4,805,828	+				-0.9
4,805,828	+				-0.7
4,805,828	+				-1.7
4,805,828	+				-1.3
4,805,828	+				+1.6
4,805,829	-				-0.7
4,805,829	-				+2.3
4,805,835	+				+0.6
4,805,835	+				+1.1
4,805,835	+				-0.6
4,805,835	+				+0.2
4,805,835	+				-1.2
4,805,836	-				+3.1
4,805,836	-				+0.2
4,805,836	-				-1.3
4,805,836	-				-0.3
4,805,840	+				-0.4
4,805,840	+				-1.5
4,805,840	+				+0.9
4,805,840	+				+1.6
4,805,840	+				-0.4
4,805,841	-				-2.4
4,805,841	-				-0.7
4,805,841	-				-2.4
4,805,841	-				+0.8
4,805,841	-				+1.0
4,805,841	-				+1.2
4,805,841	-				-0.9
4,805,860	+				-0.9
4,805,860	+				+0.1
4,805,860	+				-2.1
4,805,860	+				+1.4
4,805,860	+				-1.0
4,805,860	+				+0.1
4,805,860	+				-2.1
4,805,860	+				-2.1
4,805,860	+				-0.7
4,805,861	-				+2.5
4,805,861	-				-2.1
4,805,861	-				-1.4
4,805,861	-				-0.4
4,805,861	-				-2.7
4,805,861	-				+0.3
4,805,861	-				+6.0
4,805,863	+				+0.7
4,805,863	+				-0.9
4,805,863	+				+5.3
4,805,863	+				+1.6
4,805,863	+				-0.7
4,805,863	+				+0.9
4,805,864	-				-0.2
4,805,864	-				-1.9
4,805,864	-				+0.1
4,805,864	-				-2.5
4,805,864	-				-0.2
4,805,864	-				-0.5
4,806,012	+				+1.6
4,806,012	+				-0.7
4,806,012	+				-0.9
4,806,012	+				+3.0
4,806,013	-				+1.3
4,806,013	-				-2.3
4,806,013	-				-0.6
4,806,062	+				-0.7
4,806,072	+				+0.1
4,806,072	+				-0.5
4,806,072	+				-0.1
4,806,072	+				-0.1
4,806,072	+				-0.4
4,806,072	+				-1.6
4,806,072	+				+2.0
4,806,072	+				-2.4
4,806,073	-				-0.2
4,806,073	-				-1.7
4,806,073	-				-1.7
4,806,073	-				-0.9
4,806,073	-				+1.1
4,806,075	-				-0.7
4,806,134	+				-0.4
4,806,134	+				-1.4
4,806,134	+				-0.9
4,806,134	+				-0.3
4,806,134	+				+0.8
4,806,135	-				-1.7
4,806,135	-				+0.1
4,806,135	-				+0.6
4,806,135	-				-0.5
4,806,135	-				-0.1
4,806,135	-				-0.4
4,806,135	-				+1.6
4,806,156	+				-1.5
4,806,156	+				-0.4
4,806,157	-				+1.3
4,806,157	-				-0.7
4,806,157	-				+0.1
4,806,186	+				-2.1
4,806,186	+				+0.3
4,806,187	-				-1.4
4,806,187	-				-1.2
4,806,187	-				-0.4
4,806,196	-				-1.2
4,806,266	+		DZA65_RS22220	0.13	-2.3
4,806,266	+		DZA65_RS22220	0.13	-0.8
4,806,266	+		DZA65_RS22220	0.13	-0.4
4,806,267	-		DZA65_RS22220	0.13	-0.4
4,806,267	-		DZA65_RS22220	0.13	-1.3
4,806,267	-		DZA65_RS22220	0.13	-0.2
4,806,287	+		DZA65_RS22220	0.14	-0.9
4,806,287	+		DZA65_RS22220	0.14	+0.6
4,806,287	+		DZA65_RS22220	0.14	-0.4
4,806,287	+		DZA65_RS22220	0.14	+0.1
4,806,287	+		DZA65_RS22220	0.14	+2.6
4,806,287	+		DZA65_RS22220	0.14	-0.4
4,806,287	+		DZA65_RS22220	0.14	+4.8
4,806,287	+		DZA65_RS22220	0.14	-0.2
4,806,287	+		DZA65_RS22220	0.14	+0.6
4,806,287	+		DZA65_RS22220	0.14	+1.5
4,806,287	+		DZA65_RS22220	0.14	-0.7
4,806,287	+		DZA65_RS22220	0.14	-0.7
4,806,287	+		DZA65_RS22220	0.14	-0.4
4,806,287	+		DZA65_RS22220	0.14	-2.1
4,806,288	-		DZA65_RS22220	0.15	-1.4
4,806,288	-		DZA65_RS22220	0.15	-1.6
4,806,288	-		DZA65_RS22220	0.15	-0.4
4,806,288	-		DZA65_RS22220	0.15	-1.2
4,806,288	-		DZA65_RS22220	0.15	-2.3
4,806,288	-		DZA65_RS22220	0.15	+0.9
4,806,288	-		DZA65_RS22220	0.15	-0.4
4,806,288	-		DZA65_RS22220	0.15	-0.4
4,806,288	-		DZA65_RS22220	0.15	+0.6
4,806,288	-		DZA65_RS22220	0.15	-0.4
4,806,288	-		DZA65_RS22220	0.15	-0.9
4,806,379	+		DZA65_RS22220	0.21	+0.3
4,806,380	-		DZA65_RS22220	0.21	-1.5
4,806,422	+		DZA65_RS22220	0.24	-0.7
4,806,422	+		DZA65_RS22220	0.24	-0.7
4,806,422	+		DZA65_RS22220	0.24	-1.8
4,806,422	+		DZA65_RS22220	0.24	+0.6
4,806,422	+		DZA65_RS22220	0.24	-1.4
4,806,422	+		DZA65_RS22220	0.24	-0.7
4,806,422	+		DZA65_RS22220	0.24	+0.6
4,806,422	+		DZA65_RS22220	0.24	+0.2
4,806,422	+		DZA65_RS22220	0.24	-0.9
4,806,423	-		DZA65_RS22220	0.24	-1.8
4,806,423	-		DZA65_RS22220	0.24	+0.6
4,806,423	-		DZA65_RS22220	0.24	-2.4
4,806,423	-		DZA65_RS22220	0.24	-2.1
4,806,423	-		DZA65_RS22220	0.24	-0.4
4,806,423	-		DZA65_RS22220	0.24	-0.4
4,806,423	-		DZA65_RS22220	0.24	-1.8
4,806,423	-		DZA65_RS22220	0.24	-0.5
4,806,425	+		DZA65_RS22220	0.25	-1.2
4,806,425	+		DZA65_RS22220	0.25	-0.9
4,806,426	-		DZA65_RS22220	0.25	+2.9
4,806,426	-		DZA65_RS22220	0.25	-1.9
4,806,455	+		DZA65_RS22220	0.27	-1.7
4,806,455	+		DZA65_RS22220	0.27	-2.8
4,806,455	+		DZA65_RS22220	0.27	+2.0
4,806,455	+		DZA65_RS22220	0.27	+1.6
4,806,455	+		DZA65_RS22220	0.27	-2.9
4,806,455	+		DZA65_RS22220	0.27	+1.3
4,806,455	+		DZA65_RS22220	0.27	-0.4
4,806,456	-		DZA65_RS22220	0.27	-2.6
4,806,456	-		DZA65_RS22220	0.27	-1.3
4,806,456	-		DZA65_RS22220	0.27	+1.1
4,806,456	-		DZA65_RS22220	0.27	-0.3
4,806,456	-		DZA65_RS22220	0.27	-2.3
4,806,456	-		DZA65_RS22220	0.27	-0.6
4,806,456	-		DZA65_RS22220	0.27	-0.4
4,806,524	+		DZA65_RS22220	0.32	-1.1
4,806,524	+		DZA65_RS22220	0.32	-1.2
4,806,524	+		DZA65_RS22220	0.32	+2.5
4,806,524	+		DZA65_RS22220	0.32	+0.5
4,806,525	-		DZA65_RS22220	0.32	-1.4
4,806,525	-		DZA65_RS22220	0.32	+0.6
4,806,603	+		DZA65_RS22220	0.37	+0.2
4,806,604	-		DZA65_RS22220	0.38	+0.6
4,806,737	+		DZA65_RS22220	0.47	-0.8
4,806,737	+		DZA65_RS22220	0.47	+0.9
4,806,737	+		DZA65_RS22220	0.47	-3.1
4,806,737	+		DZA65_RS22220	0.47	-2.3
4,806,737	+		DZA65_RS22220	0.47	-1.5
4,806,737	+		DZA65_RS22220	0.47	+0.9
4,806,737	+		DZA65_RS22220	0.47	+1.5
4,806,737	+		DZA65_RS22220	0.47	-0.7
4,806,738	-		DZA65_RS22220	0.47	-0.8
4,806,738	-		DZA65_RS22220	0.47	-0.8
4,806,738	-		DZA65_RS22220	0.47	+0.2
4,806,738	-		DZA65_RS22220	0.47	+0.1
4,806,738	-		DZA65_RS22220	0.47	+1.6
4,806,738	-		DZA65_RS22220	0.47	-0.7
4,806,738	-		DZA65_RS22220	0.47	-0.9
4,806,738	-		DZA65_RS22220	0.47	-1.1
4,806,738	-				+0.6
4,806,738	-		DZA65_RS22220	0.47	-1.5
4,806,746	-		DZA65_RS22220	0.48	-0.4
4,806,746	-		DZA65_RS22220	0.48	-1.9
4,806,750	+		DZA65_RS22220	0.48	+2.6
4,806,751	-		DZA65_RS22220	0.48	-1.5
4,806,751	-		DZA65_RS22220	0.48	+0.4
4,806,789	+		DZA65_RS22220	0.51	-2.1
4,806,827	+		DZA65_RS22220	0.54	-0.2
4,806,827	+		DZA65_RS22220	0.54	-0.8
4,806,827	+		DZA65_RS22220	0.54	-1.2
4,806,827	+		DZA65_RS22220	0.54	-2.2
4,806,827	+		DZA65_RS22220	0.54	-2.0
4,806,828	-		DZA65_RS22220	0.54	-0.7
4,806,828	-		DZA65_RS22220	0.54	-0.8
4,806,828	-		DZA65_RS22220	0.54	-0.7
4,806,828	-		DZA65_RS22220	0.54	-2.3
4,806,828	-		DZA65_RS22220	0.54	+1.6
4,806,828	-		DZA65_RS22220	0.54	-0.7
4,806,843	+		DZA65_RS22220	0.55	+0.8
4,806,844	-		DZA65_RS22220	0.55	-2.4
4,806,852	+		DZA65_RS22220	0.56	-2.2
4,806,853	-		DZA65_RS22220	0.56	-1.4
4,806,891	+		DZA65_RS22220	0.58	+1.1
4,806,891	+		DZA65_RS22220	0.58	-0.7
4,806,892	-		DZA65_RS22220	0.59	-0.2
4,806,936	+		DZA65_RS22220	0.62	-0.7
4,806,937	-		DZA65_RS22220	0.62	-0.8